Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003992

Physical Location & Seq

Genomic Coordinates Reverse (-)

20482505 .. 20485312

Gene Structure 2808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g25820.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1881 bp

ATGAAGTTCATGAAACTTGGATCGAAACCGGATTTCTTTCAGACCGATGGAGACAATATAAGGTACGTCACAACTGAGTTGGCAACTGACGTAGCTGTTAATGTCGGAGATGTGAAGTTCTATTTGCATAAGTTTCCTCTTTTGTCCAAGAGTGCACGCCTGCAGAAACTGGTTGCAATCACAAATGAAGACATCGATGAAATCCACATTGATGATATTCCTGGTGGACCTGCTGCTTTTGAAATATGTGCCAAGTTCTGTTACGGCATGACTGTCACTCTCAATGCATACAATGTGGTTGCAACTCGATGCGCAGCAGAGTATCTGGAGATGTACGAAACTATTGAGAAAGGAAACCTATTCTACAAGGTTGAAGTGTTCCTAAACTCTAGCATCTTCCGGAGCTGGAAAGACTCGATTATTGTTCTTCAGACTACGAGGTCTCTTCTTCCATGGTCCGAGGAAGTTAAGGTGGTGAGCCACTGCCTTGATTCCATAGCTTCCAAGGCTACCATTGATACTTCCAAGGTTGAATGGTCGTATATGTATAACCACAAGAAACTACCATCTAATGGGGATGATTCACACTGGAATGGAGTGGCAAAACAACAGATGGTTCCGAAAGACTGGTGGGTGGAAGACCTCTGTGGGCTTCAACTTGATTTATACAAGCGGGTGATAACAATAATCAAGAGCAAAGGAAAAATCTCTGGTGATGTTATAGGGGAAGCGTTAAAGGCATATACTACCAGAAGGTTATCAGGTTTTAGCAAGGGTTTGATTCAGGGCGATGTTGTAAAGAATAAATCATTGGTAGAGACTATAATCCACTTACTTCCTGCACGCAGTGTCCCTTGCAGTTTCTTACTTAAATTGTTAAAAGCGGCAAGACTGTTAGAATGTGGAGAAGTCGAAAAATGTGAGTTAATTCGCAAAATTGGCCAGCAGCTTGACGAGGCTACAGTTTCTGATCTTTTGATTCAAGCCCCAACTGATGAAACAACGAAATATGAAGTTGATATGGTGCAAAGCCTAATTGAAGAGTTTGTGACACACAATCGAAGTGCTCAGACTGATCCTTCAATGGAAACTGAATTCCAGGAGATTAGAAGTCCCAGGTTATCAGATACTTCCAAGGTGAAGGTGGCAAAGCTGGTTGACAACTATCTTACTGAGATTTCACGTGATCCCAACTTACCTGCGTCAAAGTTTGTCCGTCTTGCTGAAATGGTATCAAGCTTCGCAAGACCAACTCATGATGGACTTTACCGTGCCATTGACATGTATCTAAAGGAACACCCGGGGATCAACAAGGGTGAGAAGAAGAGAATGTGCAAATTAATGGACTGCAGGAAGTTATCAGTAGATGCCTGCATGCATGCTGTGCAAAATGAGCGGCTGCCCTTAAGAGTCGTTGTGCAGGTACTCTTCTTTGAACAGATTAGGGCTTCAGCGTCCGGTGGCAGCAACAGTACACCTGATCTACAAGGCTCCATCAGGGCCTTACTCCCAGGTGGGTCTCATGGGAGCTCAAGGTCAACCACAACCAACACAGAAAACGGCTGGGATGATGTGCCGACAGCAGAAGAAATCAAGGCTTTAAAATGTGAGATTTTCACACCTAGGCTAGGCGAAGTGAATGGAGGAGTTGGCAGTGATAGAAATGGGAACCCCGGTGCTACAAAAAATCTTGAAAAAGTTCCATCTGGTAAAGTGAAAGGTATGATCATGTCGAAAAAGATATTTTCTAAGCTGTGGTCAAGCAAAGAAAGCAGTGGTGAAATTAGCAGTTCTAACACATCAGAGAGCCCTGGTTCTTCTAGCAATGCAGAAGAAACAAAGTCCACTCGTTCGAGGAGTAGGAGGAATTCGCTGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0007275 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009791 GO:0009908 GO:0009958 GO:0022414 GO:0032501 GO:0032502 GO:0044464 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071944 GO:0090567

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

627

Amino Acids

69.62

Weight (kDa)

8.27

Isoelectric Point (pI)

43.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23050 AT2G23050 AT4G37590 AT5G67440 AT5G67440 AT5G67440
fragaria_vesca	FvH4_1g17440 FvH4_1g17440 FvH4_1g17440 FvH4_1g17440 FvH4_1g17440 FvH4_1g17440 FvH4_1g17440
malus_domestica	MD02G1183500.v1.1 MD15G1295200.v1.1
prunus_persica	Prupe.6G222500_v2.0.a1 Prupe.6G222500_v2.0.a1 Prupe.6G222500_v2.0.a1 Prupe.6G222500_v2.0.a1 Prupe.6G222500_v2.0.a1
pyrus_communis	pycom02g14920 pycom15g25820
rosa_chinensis	RchiOBHm_Chr2g0107651
rosa_laevigata	RLG00000017605
rosa_roxburghii	Rroxscaffold_2G00136090
rosa_rugosa	Rorug02G0146100 Rorug02G0146100
rosa_samantha	Rh2AG195900 Rh2BG208300 Rh2CG201000 Rh2DG203400 Rh6AG399700
rosa_wichuraiana	Rw2G015500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	439
Acc16I	TGCGCA	1 cut(s)	313
Acc36I	ACCTGC	3 cut(s)	238, 1207, 1411
AccB7I	CCANNNNNTGG	1 cut(s)	572
AccBSI	CCGCTC	1 cut(s)	1396
AccIII	TCCGGA	1 cut(s)	399
AciI	CCGC	3 cut(s)	673, 884, 1396
AclWI	GGATC	4 cut(s)	28, 1070, 1181, 1313
AcoI	YGGCCR	1 cut(s)	940
AcsI	RAATTY	2 cut(s)	1094, 1867
AcuI	CTGAAG	2 cut(s)	413, 1434
AcvI	CACGTG	1 cut(s)	1184
AdeI	CACNNNGTG	1 cut(s)	848
AfaI	GTAC	4 cut(s)	65, 335, 1425, 1474
AfiI	CCNNNNNNNGG	2 cut(s)	572, 1628
AflII	CTTAAG	1 cut(s)	1405
AflIII	ACRYGT	1 cut(s)	1281
AgsI	TTSAA	9 cut(s)	242, 374, 533, 656, 983, 1040, 1083, 1436, 1694
AjnI	CCWGG	5 cut(s)	220, 1098, 1115, 1510, 1810
AjuI	GAANNNNNNNTTGG	2 cut(s)	794, 826
AluBI	AGCT	8 cut(s)	95, 405, 500, 949, 1153, 1239, 1530, 1753
AluI	AGCT	8 cut(s)	95, 405, 500, 949, 1153, 1239, 1530, 1753
Alw21I	GWGCWC	3 cut(s)	157, 1069, 1532
Alw26I	GTCTC	4 cut(s)	45, 447, 812, 1524
Alw44I	GTGCAC	1 cut(s)	153
AlwI	GGATC	4 cut(s)	28, 1070, 1181, 1313
AlwNI	CAGNNNCTG	2 cut(s)	169, 968
Ama87I	CYCGRG	1 cut(s)	1300
Aor13HI	TCCGGA	1 cut(s)	399
AoxI	GGCC	2 cut(s)	940, 1500
ApaLI	GTGCAC	1 cut(s)	153
ApeKI	GCWGC	5 cut(s)	233, 314, 946, 1399, 1464
ApoI	RAATTY	2 cut(s)	1094, 1867
AseI	ATTAAT	1 cut(s)	1340
Asp700I	GAANNNNTTC	1 cut(s)	1698
AspA2I	CCTAGG	1 cut(s)	1622
AspLEI	GCGC	1 cut(s)	314
AspS9I	GGNCC	3 cut(s)	227, 456, 1500
AsuC2I	CCSGG	3 cut(s)	1301, 1302, 1674
AsuHPI	GGTGA	6 cut(s)	487, 688, 725, 1150, 1328, 1790
AvaI	CYCGRG	1 cut(s)	1300
AvaII	GGWCC	2 cut(s)	227, 456
AvrII	CCTAGG	1 cut(s)	1622
BaeGI	GKGCMC	1 cut(s)	157
BalI	TGGCCA	1 cut(s)	942
BanII	GRGCYC	2 cut(s)	1532, 1811
BbrPI	CACGTG	1 cut(s)	1184
BbsI	GAAGAC	2 cut(s)	195, 645
Bbv12I	GWGCWC	3 cut(s)	157, 1069, 1532
BbvI	GCAGC	5 cut(s)	220, 326, 958, 1386, 1476
BccI	CCATC	6 cut(s)	41, 574, 607, 1253, 1502, 1711
BceAI	ACGGC	2 cut(s)	280, 1576
BciT130I	CCWGG	5 cut(s)	222, 1100, 1117, 1512, 1812
BclI	TGATCA	1 cut(s)	1725
BcnI	CCSGG	3 cut(s)	1301, 1302, 1674
BcoDI	GTCTC	4 cut(s)	45, 447, 812, 1524
BfaI	CTAG	4 cut(s)	390, 1623, 1628, 1821
BfmI	CTRYAG	3 cut(s)	161, 960, 1348
BfrI	CTTAAG	1 cut(s)	1405
BfuAI	ACCTGC	3 cut(s)	238, 1207, 1411
BisI	GCNGC	7 cut(s)	234, 315, 885, 947, 1397, 1400, 1465
BlnI	CCTAGG	1 cut(s)	1622
BlsI	GCNGC	7 cut(s)	235, 316, 886, 948, 1398, 1401, 1466
Bme1390I	CCNGG	8 cut(s)	222, 1100, 1117, 1301, 1302, 1512, 1674, 1812
Bme18I	GGWCC	2 cut(s)	227, 456
BmeT110I	CYCGRG	1 cut(s)	1300
BmgT120I	GGNCC	3 cut(s)	227, 456, 1500
BmiI	GGNNCC	3 cut(s)	618, 1492, 1670
BmrFI	CCNGG	8 cut(s)	222, 1100, 1117, 1301, 1302, 1512, 1674, 1812
BmsI	GCATC	3 cut(s)	299, 402, 1357
BpiI	GAAGAC	2 cut(s)	195, 645
BpmI	CTGGAG	1 cut(s)	347
BpuEI	CTTGAG	1 cut(s)	1516
BpuMI	CCSGG	3 cut(s)	1301, 1302, 1674
Bsa29I	ATCGAT	1 cut(s)	195
BsaAI	YACGTR	1 cut(s)	1184
BsaI	GGTCTC	2 cut(s)	447, 1524
BsaWI	WCCGGW	3 cut(s)	28, 399, 1457
Bsc4I	CCNNNNNNNGG	2 cut(s)	572, 1628
Bse1I	ACTGG	3 cut(s)	174, 593, 632
Bse3DI	GCAATG	1 cut(s)	1831
BseAI	TCCGGA	1 cut(s)	399
BseBI	CCWGG	5 cut(s)	222, 1100, 1117, 1512, 1812
BseCI	ATCGAT	1 cut(s)	195
BseGI	GGATG	2 cut(s)	583, 1573
BseLI	CCNNNNNNNGG	2 cut(s)	572, 1628
BseMI	GCAATG	1 cut(s)	1831
BseMII	CTCAG	3 cut(s)	66, 1082, 1164
BseNI	ACTGG	3 cut(s)	174, 593, 632
BseRI	GAGGAG	2 cut(s)	1659, 1870
BseSI	GKGCMC	1 cut(s)	157
BseXI	GCAGC	5 cut(s)	220, 326, 958, 1386, 1476
BseYI	CCCAGC	1 cut(s)	1563
BsgI	GTGCAG	2 cut(s)	825, 1439
BshFI	GGCC	2 cut(s)	942, 1502
BshVI	ATCGAT	1 cut(s)	195
BsiHKAI	GWGCWC	3 cut(s)	157, 1069, 1532
BsiHKCI	CYCGRG	1 cut(s)	1300
BsiSI	CCGG	5 cut(s)	29, 400, 1301, 1458, 1674
BslFI	GGGAC	2 cut(s)	836, 1098
BslI	CCNNNNNNNGG	2 cut(s)	572, 1628
BsmAI	GTCTC	4 cut(s)	45, 447, 812, 1524
BsmFI	GGGAC	2 cut(s)	836, 1098
BsnI	GGCC	2 cut(s)	942, 1502
Bso31I	GGTCTC	2 cut(s)	447, 1524
BsoBI	CYCGRG	1 cut(s)	1300
Bsp1286I	GDGCHC	4 cut(s)	157, 1069, 1532, 1811
Bsp13I	TCCGGA	1 cut(s)	399
Bsp143I	GATC	7 cut(s)	20, 970, 1075, 1186, 1305, 1480, 1725
Bsp19I	CCATGG	1 cut(s)	452
BspACI	CCGC	3 cut(s)	673, 884, 1396
BspANI	GGCC	2 cut(s)	942, 1502
BspCNI	CTCAG	3 cut(s)	67, 1081, 1165
BspDI	ATCGAT	1 cut(s)	195
BspEI	TCCGGA	1 cut(s)	399
BspHI	TCATGA	2 cut(s)	9, 1255
BspLI	GGNNCC	3 cut(s)	618, 1492, 1670
BspMAI	CTGCAG	2 cut(s)	165, 1352
BspMI	ACCTGC	3 cut(s)	238, 1207, 1411
BspPI	GGATC	4 cut(s)	28, 1070, 1181, 1313
BspTI	CTTAAG	1 cut(s)	1405
BspTNI	GGTCTC	2 cut(s)	447, 1524
BsrBI	CCGCTC	1 cut(s)	1396
BsrDI	GCAATG	1 cut(s)	1831
BsrI	ACTGG	3 cut(s)	174, 593, 632
BssMI	GATC	7 cut(s)	20, 970, 1075, 1186, 1305, 1480, 1725
BssT1I	CCWWGG	5 cut(s)	452, 504, 525, 1134, 1622
Bst2UI	CCWGG	5 cut(s)	222, 1100, 1117, 1512, 1812
Bst4CI	ACNGT	5 cut(s)	274, 894, 964, 1271, 1472
Bst6I	CTCTTC	4 cut(s)	450, 1035, 1319, 1433
BstAFI	CTTAAG	1 cut(s)	1405
BstAPI	GCANNNNNTGC	1 cut(s)	1384
BstBAI	YACGTR	1 cut(s)	1184
BstC8I	GCNNGC	7 cut(s)	157, 161, 844, 944, 1372, 1376, 1380
BstDEI	CTNAG	5 cut(s)	75, 1068, 1173, 1749, 1878
BstDSI	CCRYGG	1 cut(s)	452
BstENI	CCTNNNNNAGG	1 cut(s)	1626
BstF5I	GGATG	2 cut(s)	583, 1573
BstHHI	GCGC	1 cut(s)	314
BstKTI	GATC	7 cut(s)	23, 973, 1078, 1189, 1308, 1483, 1728
BstMAI	GTCTC	4 cut(s)	45, 447, 812, 1524
BstMBI	GATC	7 cut(s)	20, 970, 1075, 1186, 1305, 1480, 1725
BstMWI	GCNNNNNNNGC	6 cut(s)	506, 737, 939, 1384, 1393, 1770
BstNI	CCWGG	5 cut(s)	222, 1100, 1117, 1512, 1812
BstNSI	RCATGY	3 cut(s)	1285, 1378, 1382
BstSCI	CCNGG	8 cut(s)	220, 1098, 1115, 1299, 1300, 1510, 1672, 1810
BstSFI	CTRYAG	3 cut(s)	161, 960, 1348
BstSLI	GKGCMC	1 cut(s)	157
BstV1I	GCAGC	5 cut(s)	220, 326, 958, 1386, 1476
BstV2I	GAAGAC	2 cut(s)	195, 645
Bsu15I	ATCGAT	1 cut(s)	195
BsuRI	GGCC	2 cut(s)	942, 1502
BsuTUI	ATCGAT	1 cut(s)	195
BtgI	CCRYGG	1 cut(s)	452
BtgZI	GCGATG	1 cut(s)	804
BtsCI	GGATG	2 cut(s)	583, 1573
BtsI	GCAGTG	4 cut(s)	481, 853, 1660, 1780
BtsIMutI	CAGTG	5 cut(s)	481, 586, 853, 1660, 1780
BveI	ACCTGC	3 cut(s)	238, 1207, 1411
Cac8I	GCNNGC	7 cut(s)	157, 161, 844, 944, 1372, 1376, 1380
CaiI	CAGNNNCTG	2 cut(s)	169, 968
CciI	TCATGA	2 cut(s)	9, 1255
CfoI	GCGC	1 cut(s)	314
Cfr13I	GGNCC	3 cut(s)	227, 456, 1500
Cfr9I	CCCGGG	1 cut(s)	1300
ClaI	ATCGAT	1 cut(s)	195
CseI	GACGC	2 cut(s)	1191, 1443
Csp6I	GTAC	4 cut(s)	64, 334, 1424, 1473
CviAII	CATG	9 cut(s)	10, 268, 453, 1256, 1282, 1375, 1379, 1523, 1729
CviQI	GTAC	4 cut(s)	64, 334, 1424, 1473
DdeI	CTNAG	5 cut(s)	75, 1068, 1173, 1749, 1878
DpnI	GATC	7 cut(s)	22, 972, 1077, 1188, 1307, 1482, 1727
DpnII	GATC	7 cut(s)	20, 970, 1075, 1186, 1305, 1480, 1725
DraI	TTTAAA	1 cut(s)	1602
DraIII	CACNNNGTG	1 cut(s)	848
DrdI	GACNNNNNNGTC	1 cut(s)	439
DseDI	GACNNNNNNGTC	1 cut(s)	439
EaeI	YGGCCR	1 cut(s)	940
Eam1104I	CTCTTC	4 cut(s)	450, 1035, 1319, 1433
EarI	CTCTTC	4 cut(s)	450, 1035, 1319, 1433
Ecl136II	GAGCTC	1 cut(s)	1530
Eco130I	CCWWGG	5 cut(s)	452, 504, 525, 1134, 1622
Eco24I	GRGCYC	2 cut(s)	1532, 1811
Eco31I	GGTCTC	2 cut(s)	447, 1524
Eco47I	GGWCC	2 cut(s)	227, 456
Eco53kI	GAGCTC	1 cut(s)	1530
Eco57I	CTGAAG	2 cut(s)	413, 1434
Eco72I	CACGTG	1 cut(s)	1184
Eco88I	CYCGRG	1 cut(s)	1300
EcoICRI	GAGCTC	1 cut(s)	1530
EcoNI	CCTNNNNNAGG	1 cut(s)	1626
EcoO109I	RGGNCCY	1 cut(s)	1500
EcoRI	GAATTC	2 cut(s)	1094, 1867
EcoRII	CCWGG	5 cut(s)	220, 1098, 1115, 1510, 1810
EcoT14I	CCWWGG	5 cut(s)	452, 504, 525, 1134, 1622
EcoT22I	ATGCAT	2 cut(s)	289, 1380
EcoT38I	GRGCYC	2 cut(s)	1532, 1811
ErhI	CCWWGG	5 cut(s)	452, 504, 525, 1134, 1622
FaeI	CATG	9 cut(s)	13, 271, 456, 1259, 1285, 1378, 1382, 1526, 1732
FaqI	GGGAC	2 cut(s)	836, 1098
FatI	CATG	9 cut(s)	9, 267, 452, 1255, 1281, 1374, 1378, 1522, 1728
FauI	CCCGC	1 cut(s)	666
FbaI	TGATCA	1 cut(s)	1725
Fnu4HI	GCNGC	7 cut(s)	234, 315, 885, 947, 1397, 1400, 1465
FokI	GGATG	2 cut(s)	590, 1580
FriOI	GRGCYC	2 cut(s)	1532, 1811
Fsp4HI	GCNGC	7 cut(s)	234, 315, 885, 947, 1397, 1400, 1465
FspBI	CTAG	4 cut(s)	390, 1623, 1628, 1821
FspI	TGCGCA	1 cut(s)	313
GlaI	GCGC	1 cut(s)	313
GluI	GCNGC	7 cut(s)	234, 315, 885, 947, 1397, 1400, 1465
GsaI	CCCAGC	1 cut(s)	1567
GsuI	CTGGAG	1 cut(s)	347
HaeIII	GGCC	2 cut(s)	942, 1502
HapII	CCGG	5 cut(s)	29, 400, 1301, 1458, 1674
HgaI	GACGC	2 cut(s)	1191, 1443
HhaI	GCGC	1 cut(s)	314
Hin1II	CATG	9 cut(s)	13, 271, 456, 1259, 1285, 1378, 1382, 1526, 1732
Hin6I	GCGC	1 cut(s)	312
HinP1I	GCGC	1 cut(s)	312
HincII	GTYRAC	2 cut(s)	1159, 1539
HindII	GTYRAC	2 cut(s)	1159, 1539
HindIII	AAGCTT	1 cut(s)	1237
HinfI	GANTC	6 cut(s)	413, 491, 581, 781, 979, 1410
HpaII	CCGG	5 cut(s)	29, 400, 1301, 1458, 1674
HphI	GGTGA	6 cut(s)	487, 688, 725, 1150, 1328, 1790
Hpy166II	GTNNAC	6 cut(s)	155, 227, 1159, 1475, 1539, 1845
Hpy188I	TCNGA	9 cut(s)	42, 107, 432, 460, 621, 970, 1071, 1126, 1804
Hpy188III	TCNNGA	6 cut(s)	10, 326, 400, 691, 1256, 1691
Hpy8I	GTNNAC	6 cut(s)	155, 227, 1159, 1475, 1539, 1845
HpyAV	CCTTC	3 cut(s)	747, 1089, 1135
HpyCH4III	ACNGT	5 cut(s)	274, 894, 964, 1271, 1472
HpyCH4IV	ACGT	3 cut(s)	66, 90, 1183
HpyF10VI	GCNNNNNNNGC	6 cut(s)	506, 737, 939, 1384, 1393, 1770
HpyF3I	CTNAG	5 cut(s)	75, 1068, 1173, 1749, 1878
HpySE526I	ACGT	3 cut(s)	66, 90, 1183
Hsp92II	CATG	9 cut(s)	13, 271, 456, 1259, 1285, 1378, 1382, 1526, 1732
HspAI	GCGC	1 cut(s)	312
Kpn2I	TCCGGA	1 cut(s)	399
Ksp22I	TGATCA	1 cut(s)	1725
Kzo9I	GATC	7 cut(s)	20, 970, 1075, 1186, 1305, 1480, 1725
LmnI	GCTCC	3 cut(s)	402, 1496, 1527
Lsp1109I	GCAGC	5 cut(s)	220, 326, 958, 1386, 1476
LweI	GCATC	3 cut(s)	299, 402, 1357
MaeI	CTAG	4 cut(s)	390, 1623, 1628, 1821
MaeII	ACGT	3 cut(s)	66, 90, 1183
MaeIII	GTNAC	4 cut(s)	67, 260, 274, 1048
MalI	GATC	7 cut(s)	22, 972, 1077, 1188, 1307, 1482, 1727
MbiI	CCGCTC	1 cut(s)	1396
MboI	GATC	7 cut(s)	20, 970, 1075, 1186, 1305, 1480, 1725
MhlI	GDGCHC	4 cut(s)	157, 1069, 1532, 1811
MlsI	TGGCCA	1 cut(s)	942
MluCI	AATT	8 cut(s)	872, 927, 936, 1035, 1094, 1337, 1782, 1867
MluNI	TGGCCA	1 cut(s)	942
MlyI	GAGTC	2 cut(s)	407, 1419
MmeI	TCCRAC	1 cut(s)	85
MnlI	CCTC	8 cut(s)	147, 432, 454, 653, 949, 1637, 1848, 1857
Mox20I	TGGCCA	1 cut(s)	942
Mph1103I	ATGCAT	2 cut(s)	289, 1380
MroI	TCCGGA	1 cut(s)	399
MroXI	GAANNNNTTC	1 cut(s)	1698
MscI	TGGCCA	1 cut(s)	942
MseI	TTAA	9 cut(s)	99, 468, 734, 870, 878, 926, 1340, 1406, 1601
MslI	CAYNNNNRTG	3 cut(s)	210, 591, 1280
Msp20I	TGGCCA	1 cut(s)	942
MspCI	CTTAAG	1 cut(s)	1405
MspI	CCGG	5 cut(s)	29, 400, 1301, 1458, 1674
MspR9I	CCNGG	8 cut(s)	222, 1100, 1117, 1301, 1302, 1512, 1674, 1812
MvaI	CCWGG	5 cut(s)	222, 1100, 1117, 1512, 1812
MwoI	GCNNNNNNNGC	6 cut(s)	506, 737, 939, 1384, 1393, 1770
NciI	CCSGG	3 cut(s)	1301, 1302, 1674
NcoI	CCATGG	1 cut(s)	452
NdeII	GATC	7 cut(s)	20, 970, 1075, 1186, 1305, 1480, 1725
NlaIII	CATG	9 cut(s)	13, 271, 456, 1259, 1285, 1378, 1382, 1526, 1732
NlaIV	GGNNCC	3 cut(s)	618, 1492, 1670
NmuCI	GTSAC	3 cut(s)	67, 274, 1048
NsbI	TGCGCA	1 cut(s)	313
NsiI	ATGCAT	2 cut(s)	289, 1380
NspI	RCATGY	3 cut(s)	1285, 1378, 1382
PaeI	GCATGC	2 cut(s)	1378, 1382
PagI	TCATGA	2 cut(s)	9, 1255
PciI	ACATGT	1 cut(s)	1281
PdmI	GAANNNNTTC	1 cut(s)	1698
PfeI	GAWTC	4 cut(s)	491, 581, 781, 979
PflMI	CCANNNNNTGG	1 cut(s)	572
PfoI	TCCNGGA	1 cut(s)	1098
PkrI	GCNGC	7 cut(s)	235, 316, 886, 948, 1398, 1401, 1466
PleI	GAGTC	2 cut(s)	407, 1418
PmaCI	CACGTG	1 cut(s)	1184
PmlI	CACGTG	1 cut(s)	1184
PpsI	GAGTC	2 cut(s)	407, 1418
Ppu21I	YACGTR	1 cut(s)	1184
PscI	ACATGT	1 cut(s)	1281
PshBI	ATTAAT	1 cut(s)	1340
Psp124BI	GAGCTC	1 cut(s)	1532
Psp6I	CCWGG	5 cut(s)	220, 1098, 1115, 1510, 1810
PspCI	CACGTG	1 cut(s)	1184
PspFI	CCCAGC	1 cut(s)	1563
PspGI	CCWGG	5 cut(s)	220, 1098, 1115, 1510, 1810
PspN4I	GGNNCC	3 cut(s)	618, 1492, 1670
PspPI	GGNCC	3 cut(s)	227, 456, 1500
PstI	CTGCAG	2 cut(s)	165, 1352
PstNI	CAGNNNCTG	2 cut(s)	169, 968
RsaI	GTAC	4 cut(s)	65, 335, 1425, 1474
RsaNI	GTAC	4 cut(s)	64, 334, 1424, 1473
RseI	CAYNNNNRTG	3 cut(s)	210, 591, 1280
SacI	GAGCTC	1 cut(s)	1532
SaqAI	TTAA	9 cut(s)	99, 468, 734, 870, 878, 926, 1340, 1406, 1601
SatI	GCNGC	7 cut(s)	234, 315, 885, 947, 1397, 1400, 1465
Sau3AI	GATC	7 cut(s)	20, 970, 1075, 1186, 1305, 1480, 1725
Sau96I	GGNCC	3 cut(s)	227, 456, 1500
SchI	GAGTC	2 cut(s)	407, 1419
ScrFI	CCNGG	8 cut(s)	222, 1100, 1117, 1301, 1302, 1512, 1674, 1812
SduI	GDGCHC	4 cut(s)	157, 1069, 1532, 1811
SfaNI	GCATC	3 cut(s)	299, 402, 1357
SfcI	CTRYAG	3 cut(s)	161, 960, 1348
SinI	GGWCC	2 cut(s)	227, 456
SmaI	CCCGGG	1 cut(s)	1302
SmiMI	CAYNNNNRTG	3 cut(s)	210, 591, 1280
SmlI	CTYRAG	2 cut(s)	1405, 1531
SmoI	CTYRAG	2 cut(s)	1405, 1531
SphI	GCATGC	2 cut(s)	1378, 1382
Sse9I	AATT	8 cut(s)	872, 927, 936, 1035, 1094, 1337, 1782, 1867
SsiI	CCGC	3 cut(s)	673, 884, 1396
SspMI	CTAG	4 cut(s)	390, 1623, 1628, 1821
SstI	GAGCTC	1 cut(s)	1532
StyD4I	CCNGG	8 cut(s)	220, 1098, 1115, 1299, 1300, 1510, 1672, 1810
StyI	CCWWGG	5 cut(s)	452, 504, 525, 1134, 1622
TaaI	ACNGT	5 cut(s)	274, 894, 964, 1271, 1472
TaiI	ACGT	3 cut(s)	69, 93, 1186
TaqI	TCGA	8 cut(s)	23, 195, 307, 416, 912, 1060, 1733, 1853
TaqII	GACCGA	1 cut(s)	59
TasI	AATT	8 cut(s)	872, 927, 936, 1035, 1094, 1337, 1782, 1867
TatI	WGTACW	1 cut(s)	1472
TauI	GCSGC	2 cut(s)	887, 1399
TfiI	GAWTC	4 cut(s)	491, 581, 781, 979
Tru1I	TTAA	9 cut(s)	99, 468, 734, 870, 878, 926, 1340, 1406, 1601
Tru9I	TTAA	9 cut(s)	99, 468, 734, 870, 878, 926, 1340, 1406, 1601
TscAI	CASTG	5 cut(s)	488, 593, 853, 1660, 1780
TseFI	GTSAC	3 cut(s)	67, 274, 1048
TseI	GCWGC	5 cut(s)	233, 314, 946, 1399, 1464
Tsp45I	GTSAC	3 cut(s)	67, 274, 1048
TspDTI	ATGAA	6 cut(s)	17, 26, 201, 213, 1011, 1026
TspGWI	ACGGA	1 cut(s)	1205
TspMI	CCCGGG	1 cut(s)	1300
TspRI	CASTG	5 cut(s)	488, 593, 853, 1660, 1780
Van91I	CCANNNNNTGG	1 cut(s)	572
Vha464I	CTTAAG	1 cut(s)	1405
VneI	GTGCAC	1 cut(s)	153
VpaK11BI	GGWCC	2 cut(s)	227, 456
VspI	ATTAAT	1 cut(s)	1340
XagI	CCTNNNNNAGG	1 cut(s)	1626
XapI	RAATTY	2 cut(s)	1094, 1867
XceI	RCATGY	3 cut(s)	1285, 1378, 1382
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1141
XmaI	CCCGGG	1 cut(s)	1300
XmaJI	CCTAGG	1 cut(s)	1622
XmnI	GAANNNNTTC	1 cut(s)	1698
XspI	CTAG	4 cut(s)	390, 1623, 1628, 1821
Zsp2I	ATGCAT	2 cut(s)	289, 1380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.