pycom02g15320

domain in transcription factors and synapse-associated proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0012324
Physical Location & Seq
Forward (+)
12048839 .. 12050791
1953 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1452 bp
ATGTCATGGCTGGCAAAATCCATCGCCAACTCGCTCAAGCTCGACGACGACGACGGCGATTACCACGGCCCAAACCCTAGCTCCAACAATGACACAGACCCAAATTCAACCCGACCCGAATCAGGTTCACCATCAGCTCCCACCGTCAAAGGTGACATCTCCGAGCTCACCAATACCCTAACCCGCCAGTTCTGGGGCGTTGCGTCCTTCCTTGCCCCGCCTCCTGATCCCACCACCCCTCCTGCTCCCAACCCGTCCGACCCGGCCCATCCCTCCGATCTGGAACCCTCCGACGAGGACGTGATCGCCGGAATCCGCAGTGACTTCGCGGAGATCGGCGGGAAGTTCAAGACCGGGATCTCGAAGCTGTCGAGTAACATAGGGGTTTCGGAGTTCACTAAGATCGCGTCGAATTTGCTGCAGTTTGGATCCGAAGAGGAAGCGAAGGCAGCTGGTGCTGCTCTTGGTGTGACCCAGGAAGTTCTTGTGTTCGTCAGGAATATCTCTTTGCATCCGGAGACTTGGCTCGATTTCCCCCTCTCCGATGACGACGAAGATTCAGATGATTTTGAATTGTCTGATGTTCAACAAGAGCATGCGCTGGCTGTTGAACGGCTTGCGCCATCGTTGGCTGCTCTCAGAATTGAACTGTGCCCTGAGCATATGAGTGAGGCTCACTTTTGGATGATTTACTTCGTGCTCTTGCATCCTAGACTCAGTAAACATGATGCTGAGCTTTTGTCTACACCCAAGATAGTGGAAGCTAGAGGCATGTTGTCTCATCAGCTGAAGAAGGGAACTAGTGATAAGCCAGAGACATACATTTCAGGAAGTGACGCTATTTATGCGAAAGGAGTTTCTGATTCCCCAAAAGAACACCATCTTTCTGTGCCACCTAGTGCTGAATCTGACTTAGCACCTCCCAATACATCTACCACCAGATCAGCTCCTCTCCCACAGGCAGTTGATGTCGAGACAGACAAGCACCCGGTCCAGAGTAGTGAAATCCAAATTATTGACAAGCCTGTTATTGAGGAAGGACCTGTGAAGAAGACCAAATATCAGCTGCCACTCTCTAATTCTTCCTCTAAATTCGTGGATGAGAAATATGAGGATGATGGTGATGATTGGTTGAAAGAGGAAACCTCAGAAATGGATGATGTTGGTGGAACCTCCATCCCTATAGAGAATGATGAGGATGTGTCATTCAGTGATCTTGAGGATGATGATGGAGATGCGCCATCAAGTTACAAGAAGGTTACATCTGGCTCTGATTCTTCGGCAAAAGACTCAAGAGATTGGGTTCAGCTTAGCAGAGCCTCTGCCGATTTGAATAGGGACAGCAACTCTGTTGAGATTAGACATTCTGGGTCTGGCCAGGTAAGTGCTCGTAAATCGGAGACCAAAGAATCTAATGACTGGCTTGACATTGAAGACATTGATGTTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

484

Amino Acids

52.49

Weight (kDa)

4.4

Isoelectric Point (pI)

47.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 186 - 243 4.1e-14 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G65910
fragaria_vesca FvH4_1g18060
malus_domestica MD02G1188800.v1.1 MD15G1299800.v1.1
prunus_persica Prupe.6G217900_v2.0.a1 Prupe.6G217900_v2.0.a1
pyrus_communis pycom02g15320 pycom15g26230
rosa_chinensis RchiOBHm_Chr2g0108531
rosa_laevigata RLG00000017676
rosa_multiflora Rmu_co8465681.1_g000001 Rmu_sc0007574.1_g000012
rosa_roxburghii Rroxscaffold_2G00135050
rosa_rugosa Rorug02G0154100
rosa_samantha Rh2AG203000 Rh2BG216000 Rh2CG207000 Rh2DG210200
rosa_wichuraiana Rw2G016220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 743
AccII CGCG 2 cut(s) 329, 407
AccIII TCCGGA 1 cut(s) 514
AciI CCGC 5 cut(s) 184, 218, 316, 329, 339
AclWI GGATC 4 cut(s) 221, 365, 423, 436
AcoI YGGCCR 1 cut(s) 1375
AcsI RAATTY 3 cut(s) 103, 412, 1091
AcuI CTGAAG 1 cut(s) 809
AdeI CACNNNGTG 1 cut(s) 899
AfiI CCNNNNNNNGG 2 cut(s) 122, 193
AgsI TTSAA 9 cut(s) 108, 349, 572, 587, 611, 647, 1135, 1333, 1433
AhlI ACTAGT 1 cut(s) 800
AjiI CACGTC 1 cut(s) 301
AjnI CCWGG 2 cut(s) 474, 1377
Alw21I GWGCWC 3 cut(s) 168, 702, 1390
Alw26I GTCTC 5 cut(s) 512, 783, 809, 968, 1394
AlwI GGATC 4 cut(s) 221, 365, 423, 436
Aor13HI TCCGGA 1 cut(s) 514
AoxI GGCC 3 cut(s) 67, 264, 1375
ApeKI GCWGC 5 cut(s) 418, 449, 458, 632, 1066
ApoI RAATTY 3 cut(s) 103, 412, 1091
AspLEI GCGC 3 cut(s) 601, 622, 1240
AspS9I GGNCC 4 cut(s) 68, 265, 991, 1040
AsuC2I CCSGG 3 cut(s) 263, 355, 989
AsuHPI GGTGA 4 cut(s) 120, 160, 164, 1133
AvaII GGWCC 2 cut(s) 991, 1040
BaeGI GKGCMC 1 cut(s) 656
BalI TGGCCA 1 cut(s) 1377
BamHI GGATCC 1 cut(s) 428
BanII GRGCYC 1 cut(s) 168
BbsI GAAGAC 2 cut(s) 1058, 1440
Bbv12I GWGCWC 3 cut(s) 168, 702, 1390
BbvI GCAGC 5 cut(s) 405, 445, 461, 619, 1053
BccI CCATC 9 cut(s) 29, 139, 276, 631, 888, 1112, 1184, 1223, 1249
BceAI ACGGC 3 cut(s) 70, 82, 629
BcgI CGANNNNNNTGC 4 cut(s) 307, 341, 400, 434
BciT130I CCWGG 2 cut(s) 476, 1379
BcnI CCSGG 3 cut(s) 263, 355, 989
BcoDI GTCTC 5 cut(s) 512, 783, 809, 968, 1394
BcuI ACTAGT 1 cut(s) 800
BfaI CTAG 5 cut(s) 78, 711, 765, 801, 897
BfmI CTRYAG 2 cut(s) 419, 1182
BisI GCNGC 5 cut(s) 419, 450, 459, 633, 1067
BlpI GCTNAGC 2 cut(s) 732, 1310
BlsI GCNGC 5 cut(s) 420, 451, 460, 634, 1068
Bme1390I CCNGG 5 cut(s) 263, 355, 476, 989, 1379
Bme18I GGWCC 2 cut(s) 991, 1040
BmgBI CACGTC 1 cut(s) 301
BmgT120I GGNCC 4 cut(s) 68, 265, 991, 1040
BmiI GGNNCC 3 cut(s) 285, 430, 1171
BmrFI CCNGG 5 cut(s) 263, 355, 476, 989, 1379
BmsI GCATC 4 cut(s) 520, 715, 718, 1225
BpiI GAAGAC 2 cut(s) 1058, 1440
BplI GAGNNNNNCTC 4 cut(s) 658, 690, 1130, 1162
Bpu10I CCTNAGC 1 cut(s) 657
Bpu1102I GCTNAGC 2 cut(s) 732, 1310
BpuEI CTTGAG 3 cut(s) 20, 1238, 1276
BpuMI CCSGG 3 cut(s) 263, 355, 989
BsaI GGTCTC 1 cut(s) 1394
BsaJI CCNNGG 2 cut(s) 64, 474
BsaWI WCCGGW 1 cut(s) 514
BsaXI ACNNNNNCTCC 4 cut(s) 65, 95, 223, 253
Bsc4I CCNNNNNNNGG 2 cut(s) 122, 193
Bse1I ACTGG 2 cut(s) 187, 1424
BseAI TCCGGA 1 cut(s) 514
BseBI CCWGG 2 cut(s) 476, 1379
BseDI CCNNGG 2 cut(s) 64, 474
BseLI CCNNNNNNNGG 2 cut(s) 122, 193
BseMII CTCAG 5 cut(s) 648, 652, 723, 730, 1161
BseNI ACTGG 2 cut(s) 187, 1424
BseRI GAGGAG 1 cut(s) 939
BseSI GKGCMC 1 cut(s) 656
BseXI GCAGC 5 cut(s) 405, 445, 461, 619, 1053
Bsh1236I CGCG 2 cut(s) 329, 407
BshFI GGCC 3 cut(s) 69, 266, 1377
BsiHKAI GWGCWC 3 cut(s) 168, 702, 1390
BsiSI CCGG 5 cut(s) 263, 309, 354, 515, 989
BslFI GGGAC 1 cut(s) 1352
BslI CCNNNNNNNGG 2 cut(s) 122, 193
BsmAI GTCTC 5 cut(s) 512, 783, 809, 968, 1394
BsmFI GGGAC 1 cut(s) 1352
BsnI GGCC 3 cut(s) 69, 266, 1377
Bso31I GGTCTC 1 cut(s) 1394
Bsp1286I GDGCHC 4 cut(s) 168, 656, 702, 1390
Bsp13I TCCGGA 1 cut(s) 514
Bsp143I GATC 9 cut(s) 226, 277, 303, 333, 357, 402, 428, 941, 1213
Bsp1720I GCTNAGC 2 cut(s) 732, 1310
BspACI CCGC 5 cut(s) 184, 218, 316, 329, 339
BspANI GGCC 3 cut(s) 69, 266, 1377
BspCNI CTCAG 5 cut(s) 649, 651, 724, 729, 1160
BspEI TCCGGA 1 cut(s) 514
BspFNI CGCG 2 cut(s) 329, 407
BspLI GGNNCC 3 cut(s) 285, 430, 1171
BspMAI CTGCAG 1 cut(s) 423
BspPI GGATC 4 cut(s) 221, 365, 423, 436
BspTNI GGTCTC 1 cut(s) 1394
BsrI ACTGG 2 cut(s) 187, 1424
BssECI CCNNGG 2 cut(s) 64, 474
BssMI GATC 9 cut(s) 226, 277, 303, 333, 357, 402, 428, 941, 1213
Bst2UI CCWGG 2 cut(s) 476, 1379
Bst4CI ACNGT 2 cut(s) 145, 651
Bst6I CTCTTC 1 cut(s) 429
BstAPI GCANNNNNTGC 1 cut(s) 455
BstC8I GCNNGC 4 cut(s) 12, 597, 603, 618
BstDEI CTNAG 8 cut(s) 399, 638, 657, 716, 732, 913, 1147, 1310
BstDSI CCRYGG 1 cut(s) 64
BstFNI CGCG 2 cut(s) 329, 407
BstHHI GCGC 3 cut(s) 601, 622, 1240
BstKTI GATC 9 cut(s) 229, 280, 306, 336, 360, 405, 431, 944, 1216
BstMAI GTCTC 5 cut(s) 512, 783, 809, 968, 1394
BstMBI GATC 9 cut(s) 226, 277, 303, 333, 357, 402, 428, 941, 1213
BstMWI GCNNNNNNNGC 4 cut(s) 449, 455, 458, 845
BstNI CCWGG 2 cut(s) 476, 1379
BstNSI RCATGY 2 cut(s) 599, 775
BstSCI CCNGG 5 cut(s) 261, 353, 474, 987, 1377
BstSFI CTRYAG 2 cut(s) 419, 1182
BstSLI GKGCMC 1 cut(s) 656
BstUI CGCG 2 cut(s) 329, 407
BstV1I GCAGC 5 cut(s) 405, 445, 461, 619, 1053
BstV2I GAAGAC 2 cut(s) 1058, 1440
BstX2I RGATCY 2 cut(s) 357, 428
BstXI CCANNNNNNTGG 1 cut(s) 757
BstYI RGATCY 2 cut(s) 357, 428
BsuRI GGCC 3 cut(s) 69, 266, 1377
BtgI CCRYGG 1 cut(s) 64
BtgZI GCGATG 1 cut(s) 7
BtrI CACGTC 1 cut(s) 301
BtsI GCAGTG 1 cut(s) 325
BtsIMutI CAGTG 2 cut(s) 325, 1216
Cac8I GCNNGC 4 cut(s) 12, 597, 603, 618
CfoI GCGC 3 cut(s) 601, 622, 1240
Cfr13I GGNCC 4 cut(s) 68, 265, 991, 1040
CseI GACGC 3 cut(s) 192, 396, 845
CviAII CATG 4 cut(s) 6, 596, 725, 772
DdeI CTNAG 8 cut(s) 399, 638, 657, 716, 732, 913, 1147, 1310
DpnI GATC 9 cut(s) 228, 279, 305, 335, 359, 404, 430, 943, 1215
DpnII GATC 9 cut(s) 226, 277, 303, 333, 357, 402, 428, 941, 1213
DraIII CACNNNGTG 1 cut(s) 899
EaeI YGGCCR 1 cut(s) 1375
Eam1104I CTCTTC 1 cut(s) 429
EarI CTCTTC 1 cut(s) 429
Ecl136II GAGCTC 1 cut(s) 166
Eco24I GRGCYC 1 cut(s) 168
Eco31I GGTCTC 1 cut(s) 1394
Eco47I GGWCC 2 cut(s) 991, 1040
Eco53kI GAGCTC 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 809
EcoICRI GAGCTC 1 cut(s) 166
EcoO109I RGGNCCY 1 cut(s) 1040
EcoRII CCWGG 2 cut(s) 474, 1377
EcoT38I GRGCYC 1 cut(s) 168
FaeI CATG 4 cut(s) 9, 599, 728, 775
FaqI GGGAC 1 cut(s) 1352
FatI CATG 4 cut(s) 5, 595, 724, 771
FauI CCCGC 3 cut(s) 191, 225, 332
FauNDI CATATG 1 cut(s) 663
FblI GTMKAC 1 cut(s) 743
Fnu4HI GCNGC 5 cut(s) 419, 450, 459, 633, 1067
FriOI GRGCYC 1 cut(s) 168
Fsp4HI GCNGC 5 cut(s) 419, 450, 459, 633, 1067
FspBI CTAG 5 cut(s) 78, 711, 765, 801, 897
GlaI GCGC 3 cut(s) 600, 621, 1239
GluI GCNGC 5 cut(s) 419, 450, 459, 633, 1067
HaeIII GGCC 3 cut(s) 69, 266, 1377
HapII CCGG 5 cut(s) 263, 309, 354, 515, 989
HgaI GACGC 3 cut(s) 192, 396, 845
HhaI GCGC 3 cut(s) 601, 622, 1240
Hin1II CATG 4 cut(s) 9, 599, 728, 775
Hin6I GCGC 3 cut(s) 599, 620, 1238
HinP1I GCGC 3 cut(s) 599, 620, 1238
HinfI GANTC 9 cut(s) 119, 312, 557, 714, 863, 905, 1274, 1289, 1409
HpaII CCGG 5 cut(s) 263, 309, 354, 515, 989
HphI GGTGA 4 cut(s) 120, 160, 164, 1133
Hpy166II GTNNAC 4 cut(s) 128, 396, 722, 744
Hpy8I GTNNAC 4 cut(s) 128, 396, 722, 744
Hpy99I CGWCG 7 cut(s) 47, 50, 53, 56, 296, 412, 554
HpyAV CCTTC 5 cut(s) 217, 439, 787, 1031, 1249
HpyCH4III ACNGT 2 cut(s) 145, 651
HpyCH4IV ACGT 1 cut(s) 300
HpyCH4V TGCA 3 cut(s) 421, 511, 706
HpyF10VI GCNNNNNNNGC 4 cut(s) 449, 455, 458, 845
HpyF3I CTNAG 8 cut(s) 399, 638, 657, 716, 732, 913, 1147, 1310
HpySE526I ACGT 1 cut(s) 300
Hsp92II CATG 4 cut(s) 9, 599, 728, 775
HspAI GCGC 3 cut(s) 599, 620, 1238
Kpn2I TCCGGA 1 cut(s) 514
Kzo9I GATC 9 cut(s) 226, 277, 303, 333, 357, 402, 428, 941, 1213
LmnI GCTCC 4 cut(s) 86, 142, 250, 952
Lsp1109I GCAGC 5 cut(s) 405, 445, 461, 619, 1053
LweI GCATC 4 cut(s) 520, 715, 718, 1225
MaeI CTAG 5 cut(s) 78, 711, 765, 801, 897
MaeII ACGT 1 cut(s) 300
MaeIII GTNAC 7 cut(s) 152, 320, 374, 469, 833, 1247, 1258
MalI GATC 9 cut(s) 228, 279, 305, 335, 359, 404, 430, 943, 1215
MboI GATC 9 cut(s) 226, 277, 303, 333, 357, 402, 428, 941, 1213
MboII GAAGA 8 cut(s) 446, 566, 802, 1060, 1063, 1074, 1269, 1445
MflI RGATCY 2 cut(s) 357, 428
MhlI GDGCHC 4 cut(s) 168, 656, 702, 1390
MlsI TGGCCA 1 cut(s) 1377
MluCI AATT 7 cut(s) 103, 412, 572, 642, 1011, 1078, 1091
MluNI TGGCCA 1 cut(s) 1377
MlyI GAGTC 2 cut(s) 708, 1283
MmeI TCCRAC 3 cut(s) 108, 282, 315
Mox20I TGGCCA 1 cut(s) 1377
MroI TCCGGA 1 cut(s) 514
MscI TGGCCA 1 cut(s) 1377
MslI CAYNNNNRTG 1 cut(s) 666
Msp20I TGGCCA 1 cut(s) 1377
MspA1I CMGCKG 3 cut(s) 452, 787, 1066
MspI CCGG 5 cut(s) 263, 309, 354, 515, 989
MspR9I CCNGG 5 cut(s) 263, 355, 476, 989, 1379
MvaI CCWGG 2 cut(s) 476, 1379
MvnI CGCG 2 cut(s) 329, 407
MwoI GCNNNNNNNGC 4 cut(s) 449, 455, 458, 845
NciI CCSGG 3 cut(s) 263, 355, 989
NdeI CATATG 1 cut(s) 663
NdeII GATC 9 cut(s) 226, 277, 303, 333, 357, 402, 428, 941, 1213
NlaIII CATG 4 cut(s) 9, 599, 728, 775
NlaIV GGNNCC 3 cut(s) 285, 430, 1171
NmuCI GTSAC 4 cut(s) 152, 320, 469, 833
NspI RCATGY 2 cut(s) 599, 775
PaeI GCATGC 1 cut(s) 599
PcsI WCGNNNNNNNCGW 3 cut(s) 48, 54, 368
PfeI GAWTC 7 cut(s) 119, 312, 557, 863, 905, 1274, 1409
PkrI GCNGC 5 cut(s) 420, 451, 460, 634, 1068
PleI GAGTC 2 cut(s) 708, 1283
PpsI GAGTC 2 cut(s) 708, 1283
PpuMI RGGWCCY 1 cut(s) 1040
Psp124BI GAGCTC 1 cut(s) 168
Psp5II RGGWCCY 1 cut(s) 1040
Psp6I CCWGG 2 cut(s) 474, 1377
PspGI CCWGG 2 cut(s) 474, 1377
PspN4I GGNNCC 3 cut(s) 285, 430, 1171
PspPI GGNCC 4 cut(s) 68, 265, 991, 1040
PspPPI RGGWCCY 1 cut(s) 1040
PstI CTGCAG 1 cut(s) 423
PsuI RGATCY 2 cut(s) 357, 428
PvuII CAGCTG 3 cut(s) 452, 787, 1066
RseI CAYNNNNRTG 1 cut(s) 666
SacI GAGCTC 1 cut(s) 168
SatI GCNGC 5 cut(s) 419, 450, 459, 633, 1067
Sau3AI GATC 9 cut(s) 226, 277, 303, 333, 357, 402, 428, 941, 1213
Sau96I GGNCC 4 cut(s) 68, 265, 991, 1040
SchI GAGTC 2 cut(s) 708, 1283
ScrFI CCNGG 5 cut(s) 263, 355, 476, 989, 1379
SduI GDGCHC 4 cut(s) 168, 656, 702, 1390
SfaNI GCATC 4 cut(s) 520, 715, 718, 1225
SfcI CTRYAG 2 cut(s) 419, 1182
SinI GGWCC 2 cut(s) 991, 1040
SmiMI CAYNNNNRTG 1 cut(s) 666
SmlI CTYRAG 3 cut(s) 35, 1217, 1291
SmoI CTYRAG 3 cut(s) 35, 1217, 1291
SpeI ACTAGT 1 cut(s) 800
SphI GCATGC 1 cut(s) 599
Sse9I AATT 7 cut(s) 103, 412, 572, 642, 1011, 1078, 1091
SsiI CCGC 5 cut(s) 184, 218, 316, 329, 339
SspMI CTAG 5 cut(s) 78, 711, 765, 801, 897
SstI GAGCTC 1 cut(s) 168
StyD4I CCNGG 5 cut(s) 261, 353, 474, 987, 1377
TaaI ACNGT 2 cut(s) 145, 651
TaiI ACGT 1 cut(s) 303
TaqI TCGA 6 cut(s) 42, 362, 371, 410, 528, 972
TasI AATT 7 cut(s) 103, 412, 572, 642, 1011, 1078, 1091
TfiI GAWTC 7 cut(s) 119, 312, 557, 863, 905, 1274, 1409
TscAI CASTG 2 cut(s) 325, 1216
TseFI GTSAC 4 cut(s) 152, 320, 469, 833
TseI GCWGC 5 cut(s) 418, 449, 458, 632, 1066
Tsp45I GTSAC 4 cut(s) 152, 320, 469, 833
TspRI CASTG 2 cut(s) 325, 1216
VpaK11BI GGWCC 2 cut(s) 991, 1040
XapI RAATTY 3 cut(s) 103, 412, 1091
XceI RCATGY 2 cut(s) 599, 775
XmiI GTMKAC 1 cut(s) 743
XspI CTAG 5 cut(s) 78, 711, 765, 801, 897
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.