Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0004970

Physical Location & Seq

Genomic Coordinates Forward (+)

21382961 .. 21385462

Gene Structure 2502 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGTGGCAGCGCTTTGAATTAAGCTCGTTCAACCAGTGTGGCAGTCAACTCTCACCATTTGCTTCTCAGTCTCTGTTGAGAAGGATCCAGAGACCCTATTCTTCTCTGGCTGCCACGCAACGAAAATCACGCAAGATGCTTTACTACTTGACGGGTTTGGTTTTTGCAATGGTGGCTGCCAGTTATGCAGCTGTTCCTCTCTACAGAAGATTCTGCCAAGCTACAGGGTATGGAGGCACTATCCAACGCCGTGAGAGTGTTGAACAGAAGATTGCTCGGCATGCTAAGGATGGCACAGTTACAAATAGGGAGATTGTGGTGCAGTTCAATGCTGATGTGGCTGATGGAATGCAATGGAAGTTTATTCCTACACAAAGAGAGGTAAGGGTCAAACCTGGAGAAAGTGCACTTGCTTTCTATACTGCTGAAAATCGAAGTTCAACTCCAATAGTTGGTGTCTCCACATATAATGTTACCCCTATGAAGGCTGCAGTTTACTTCAATAAAATACAGTGCTTTTGCTTCGAGGAGCAGCGACTTCTTCCAGGCGAGCAGATTGACATGCCTGTGTTCTTTTATATCGACCCTGAGTTTGAAACAGATCCGAGAATGGATGGCATCAATAACATAATTTTGTCCTATACATTTTTCAAGGTTTCAGAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009846 GO:0009856 GO:0009893 GO:0010015 GO:0010101 GO:0010155 GO:0016020 GO:0016021 GO:0019222 GO:0022414 GO:0022622 GO:0022898 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031323 GO:0031325 GO:0031966 GO:0031967 GO:0031975 GO:0032409 GO:0032411 GO:0032412 GO:0032414 GO:0032501 GO:0032502 GO:0032592 GO:0032879 GO:0034762 GO:0034764 GO:0034765 GO:0034767 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043270 GO:0043467 GO:0043621 GO:0044093 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044706 GO:0048364 GO:0048518 GO:0048522 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051049 GO:0051050 GO:0051341 GO:0051353 GO:0051704 GO:0065007 GO:0065009 GO:0090696 GO:0090697 GO:0090698 GO:0098573 GO:0099402 GO:1904062 GO:1904064 GO:1904732 GO:1904734 GO:1904959 GO:1904960 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 map00190 map01100 map04714

Pfam Domains

Protein Families

CtaG_Cox11

Protein Analysis

223

Amino Acids

25.45

Weight (kDa)

9.03

Isoelectric Point (pI)

43.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CtaG_Cox11	PF04442	64 - 218	6.1e-61	Cytochrome c oxidase assembly protein CtaG/Cox11

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0004970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02410 AT1G02410 AT1G02410
malus_domestica	MD02G1272100.v1.1 MD07G1041100.v1.1
prunus_persica	Prupe.3G281100_v2.0.a1 Prupe.3G281100_v2.0.a1 Prupe.7G012700_v2.0.a1 Prupe.7G012700_v2.0.a1 Prupe.7G012700_v2.0.a1 Prupe.7G012700_v2.0.a1
pyrus_communis	pycom02g23270 pycom07g02850
rosa_chinensis	RchiOBHm_Chr1g0359421 RchiOBHm_Chr3g0452351
rosa_laevigata	RLG00000025608 RLG00000027871
rosa_multiflora	Rmu_sc0010928.1_g000013 Rmu_ssc0000358.1_g000007
rosa_roxburghii	Rroxscaffold_4G00297020
rosa_rugosa	Rorug01G0271100 Rorug02G0640300
rosa_samantha	Rh1AG284500 Rh1BG250400 Rh1CG268500 Rh1DG279500 Rh3AG042000 Rh3CG042200
rosa_wichuraiana	Rw1G025270 Rw3G003210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	452
AclWI	GGATC	3 cut(s)	79, 92, 596
AfeI	AGCGCT	1 cut(s)	11
AfiI	CCNNNNNNNGG	2 cut(s)	452, 484
AgsI	TTSAA	8 cut(s)	17, 31, 263, 328, 441, 502, 596, 652
AjnI	CCWGG	2 cut(s)	394, 544
AluBI	AGCT	3 cut(s)	24, 191, 221
AluI	AGCT	3 cut(s)	24, 191, 221
Alw21I	GWGCWC	1 cut(s)	409
Alw26I	GTCTC	3 cut(s)	75, 85, 463
Alw44I	GTGCAC	1 cut(s)	405
AlwI	GGATC	3 cut(s)	79, 92, 596
AlwNI	CAGNNNCTG	1 cut(s)	73
Aor51HI	AGCGCT	1 cut(s)	11
ApaLI	GTGCAC	1 cut(s)	405
ApeKI	GCWGC	6 cut(s)	7, 110, 176, 188, 488, 532
ArsI	GACNNNNNNTTYG	2 cut(s)	575, 607
AspLEI	GCGC	1 cut(s)	12
AsuHPI	GGTGA	1 cut(s)	45
BaeGI	GKGCMC	1 cut(s)	409
BamHI	GGATCC	1 cut(s)	84
Bbv12I	GWGCWC	1 cut(s)	409
BbvI	GCAGC	6 cut(s)	19, 97, 163, 200, 475, 544
BccI	CCATC	3 cut(s)	284, 338, 608
BceAI	ACGGC	1 cut(s)	234
BciT130I	CCWGG	2 cut(s)	396, 546
BcoDI	GTCTC	3 cut(s)	75, 85, 463
BfmI	CTRYAG	3 cut(s)	202, 222, 489
BfoI	RGCGCY	1 cut(s)	13
BisI	GCNGC	6 cut(s)	8, 111, 177, 189, 489, 533
BlsI	GCNGC	6 cut(s)	9, 112, 178, 190, 490, 534
Bme1390I	CCNGG	2 cut(s)	396, 546
BmiI	GGNNCC	1 cut(s)	86
BmrFI	CCNGG	2 cut(s)	396, 546
BmsI	GCATC	2 cut(s)	126, 627
BpmI	CTGGAG	1 cut(s)	417
Bpu10I	CCTNAGC	1 cut(s)	285
BsaI	GGTCTC	1 cut(s)	85
Bsc4I	CCNNNNNNNGG	2 cut(s)	452, 484
Bse1I	ACTGG	2 cut(s)	34, 180
Bse3DI	GCAATG	2 cut(s)	174, 359
BseBI	CCWGG	2 cut(s)	396, 546
BseGI	GGATG	2 cut(s)	295, 619
BseLI	CCNNNNNNNGG	2 cut(s)	452, 484
BseMI	GCAATG	2 cut(s)	174, 359
BseMII	CTCAG	2 cut(s)	80, 579
BseNI	ACTGG	2 cut(s)	34, 180
BseRI	GAGGAG	1 cut(s)	542
BseSI	GKGCMC	1 cut(s)	409
BseXI	GCAGC	6 cut(s)	19, 97, 163, 200, 475, 544
BsgI	GTGCAG	1 cut(s)	341
BsiHKAI	GWGCWC	1 cut(s)	409
BslI	CCNNNNNNNGG	2 cut(s)	452, 484
BsmAI	GTCTC	3 cut(s)	75, 85, 463
BsmI	GAATGC	1 cut(s)	354
Bso31I	GGTCTC	1 cut(s)	85
Bsp1286I	GDGCHC	1 cut(s)	409
Bsp143I	GATC	2 cut(s)	84, 601
BspCNI	CTCAG	2 cut(s)	79, 580
BspLI	GGNNCC	1 cut(s)	86
BspMAI	CTGCAG	1 cut(s)	493
BspPI	GGATC	3 cut(s)	79, 92, 596
BspTNI	GGTCTC	1 cut(s)	85
BsrDI	GCAATG	2 cut(s)	174, 359
BsrI	ACTGG	2 cut(s)	34, 180
BssMI	GATC	2 cut(s)	84, 601
Bst2UI	CCWGG	2 cut(s)	396, 546
Bst4CI	ACNGT	2 cut(s)	298, 513
BstC8I	GCNNGC	2 cut(s)	282, 551
BstDEI	CTNAG	3 cut(s)	66, 285, 588
BstF5I	GGATG	2 cut(s)	295, 619
BstH2I	RGCGCY	1 cut(s)	13
BstHHI	GCGC	1 cut(s)	12
BstKTI	GATC	2 cut(s)	87, 604
BstMAI	GTCTC	3 cut(s)	75, 85, 463
BstMBI	GATC	2 cut(s)	84, 601
BstMWI	GCNNNNNNNGC	4 cut(s)	173, 185, 281, 338
BstNI	CCWGG	2 cut(s)	396, 546
BstNSI	RCATGY	2 cut(s)	284, 565
BstSCI	CCNGG	2 cut(s)	394, 544
BstSFI	CTRYAG	3 cut(s)	202, 222, 489
BstSLI	GKGCMC	1 cut(s)	409
BstV1I	GCAGC	6 cut(s)	19, 97, 163, 200, 475, 544
BstX2I	RGATCY	2 cut(s)	84, 601
BstYI	RGATCY	2 cut(s)	84, 601
BtsCI	GGATG	2 cut(s)	295, 619
BtsIMutI	CAGTG	2 cut(s)	41, 518
Cac8I	GCNNGC	2 cut(s)	282, 551
CaiI	CAGNNNCTG	1 cut(s)	73
CfoI	GCGC	1 cut(s)	12
CspCI	CAANNNNNGTGG	2 cut(s)	19, 54
CviAII	CATG	2 cut(s)	281, 562
CviJI	RGCY	7 cut(s)	24, 110, 176, 191, 221, 341, 488
CviKI_1	RGCY	7 cut(s)	24, 110, 176, 191, 221, 341, 488
DdeI	CTNAG	3 cut(s)	66, 285, 588
DpnI	GATC	2 cut(s)	86, 603
DpnII	GATC	2 cut(s)	84, 601
Eco31I	GGTCTC	1 cut(s)	85
Eco47III	AGCGCT	1 cut(s)	11
EcoRII	CCWGG	2 cut(s)	394, 544
FaeI	CATG	2 cut(s)	284, 565
FatI	CATG	2 cut(s)	280, 561
Fnu4HI	GCNGC	6 cut(s)	8, 111, 177, 189, 489, 533
FokI	GGATG	2 cut(s)	302, 626
Fsp4HI	GCNGC	6 cut(s)	8, 111, 177, 189, 489, 533
GlaI	GCGC	1 cut(s)	11
GluI	GCNGC	6 cut(s)	8, 111, 177, 189, 489, 533
GsuI	CTGGAG	1 cut(s)	417
HaeII	RGCGCY	1 cut(s)	13
HhaI	GCGC	1 cut(s)	12
Hin1II	CATG	2 cut(s)	284, 565
Hin6I	GCGC	1 cut(s)	10
HinP1I	GCGC	1 cut(s)	10
HincII	GTYRAC	1 cut(s)	47
HindII	GTYRAC	1 cut(s)	47
HinfI	GANTC	1 cut(s)	210
HphI	GGTGA	1 cut(s)	45
Hpy166II	GTNNAC	3 cut(s)	47, 407, 496
Hpy188I	TCNGA	2 cut(s)	606, 661
Hpy188III	TCNNGA	1 cut(s)	88
Hpy8I	GTNNAC	3 cut(s)	47, 407, 496
HpyAV	CCTTC	2 cut(s)	75, 478
HpyCH4III	ACNGT	2 cut(s)	298, 513
HpyCH4V	TGCA	6 cut(s)	167, 188, 322, 352, 407, 491
HpyF10VI	GCNNNNNNNGC	4 cut(s)	173, 185, 281, 338
HpyF3I	CTNAG	3 cut(s)	66, 285, 588
Hsp92II	CATG	2 cut(s)	284, 565
HspAI	GCGC	1 cut(s)	10
Kzo9I	GATC	2 cut(s)	84, 601
LmnI	GCTCC	1 cut(s)	529
Lsp1109I	GCAGC	6 cut(s)	19, 97, 163, 200, 475, 544
LweI	GCATC	2 cut(s)	126, 627
MaeIII	GTNAC	2 cut(s)	298, 472
MalI	GATC	2 cut(s)	86, 603
MboI	GATC	2 cut(s)	84, 601
MboII	GAAGA	4 cut(s)	93, 219, 280, 533
MflI	RGATCY	2 cut(s)	84, 601
MhlI	GDGCHC	1 cut(s)	409
MluCI	AATT	2 cut(s)	17, 630
MmeI	TCCRAC	1 cut(s)	268
MnlI	CCTC	5 cut(s)	207, 227, 373, 520, 655
MseI	TTAA	1 cut(s)	20
MslI	CAYNNNNRTG	1 cut(s)	566
MspA1I	CMGCKG	1 cut(s)	191
MspR9I	CCNGG	2 cut(s)	396, 546
Mva1269I	GAATGC	1 cut(s)	354
MvaI	CCWGG	2 cut(s)	396, 546
MwoI	GCNNNNNNNGC	4 cut(s)	173, 185, 281, 338
NdeII	GATC	2 cut(s)	84, 601
NlaIII	CATG	2 cut(s)	284, 565
NlaIV	GGNNCC	1 cut(s)	86
NmeAIII	GCCGAG	1 cut(s)	256
NspI	RCATGY	2 cut(s)	284, 565
PaeI	GCATGC	1 cut(s)	284
PctI	GAATGC	1 cut(s)	354
PfeI	GAWTC	1 cut(s)	210
PflMI	CCANNNNNTGG	1 cut(s)	452
PkrI	GCNGC	6 cut(s)	9, 112, 178, 190, 490, 534
Psp6I	CCWGG	2 cut(s)	394, 544
PspGI	CCWGG	2 cut(s)	394, 544
PspN4I	GGNNCC	1 cut(s)	86
PstI	CTGCAG	1 cut(s)	493
PstNI	CAGNNNCTG	1 cut(s)	73
PsuI	RGATCY	2 cut(s)	84, 601
PvuII	CAGCTG	1 cut(s)	191
RseI	CAYNNNNRTG	1 cut(s)	566
SaqAI	TTAA	1 cut(s)	20
SatI	GCNGC	6 cut(s)	8, 111, 177, 189, 489, 533
Sau3AI	GATC	2 cut(s)	84, 601
ScrFI	CCNGG	2 cut(s)	396, 546
SduI	GDGCHC	1 cut(s)	409
SetI	ASST	6 cut(s)	26, 193, 223, 384, 397, 657
SfaNI	GCATC	2 cut(s)	126, 627
SfcI	CTRYAG	3 cut(s)	202, 222, 489
SmiMI	CAYNNNNRTG	1 cut(s)	566
SphI	GCATGC	1 cut(s)	284
Sse9I	AATT	2 cut(s)	17, 630
StyD4I	CCNGG	2 cut(s)	394, 544
TaaI	ACNGT	2 cut(s)	298, 513
TaqI	TCGA	3 cut(s)	433, 525, 582
TasI	AATT	2 cut(s)	17, 630
TfiI	GAWTC	1 cut(s)	210
Tru1I	TTAA	1 cut(s)	20
Tru9I	TTAA	1 cut(s)	20
TscAI	CASTG	2 cut(s)	41, 518
TseI	GCWGC	6 cut(s)	7, 110, 176, 188, 488, 532
TspDTI	ATGAA	1 cut(s)	497
TspRI	CASTG	2 cut(s)	41, 518
Van91I	CCANNNNNTGG	1 cut(s)	452
VneI	GTGCAC	1 cut(s)	405
XceI	RCATGY	2 cut(s)	284, 565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.