Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0005390

Physical Location & Seq

Genomic Coordinates Forward (+)

24648989 .. 24654979

Gene Structure 5991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g26830.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGGCTAATGCCACTGATGATGTTGATTCATTCACTACTCTTGGGAGAAGCACCGTCTCTTATTACGGTGTGGGGCATATGCTTAATGACATTACTGCTTCCTGTTGGTTTACATATCTCTTACTGTTCTTGACAGATATTGGACTTTCCCCAAGGGATGCTGCTACTGTTATGCTTTCTGGTCAAATAGCTGATGGATTTGCAACCATATTTGCTGGCGAACTGATAGATCGGTTTGGACATTTCAAATTGTGGCATGCTGCAGGCTCTGTTTTGGTTGCTATATCTTTTTCTTCCGTTTTTGGTGCTTGCATACCTTGTAAAATTTTTGGCACCTCTTCATCAACATTGCGAACTGTCGGTTACAGTATATTTGCAGCCATCTTTAACGTTGGTTGGGCTGCTACTCAGGTTTCACACATGTCTATGTTGAATTGCATTACGCTGAATTCAAATAGCAGAGTGGTGCTAGCTAGCTGTCGAAATGCTTTTACTATGGTTGCCAACCTCAGCCTGTATGCAGTTGCTTTTGTTGTCTTTGGTGTCACTCGGGCAAATACACATGCCGACATTGAAATTCAGTACCGCTGGATTGCGTATTTGTCAATTTTCATAGGATGCTGCTTTGTGGGTATATTTCATCTCGGCACAAAAGAGCCAAGATTAAAAGTCAGCGCACAAGGAAACAGTAGTTCAAGGATTTCATGGACATACTGGTTCAAGAAAGTTCTGTATTATCAGGTTGCTATTGTTTATGTGCTGACCAGGCTAGTGGTCAATGTTTCACAGGCATATCTTGCATTCTATGTTATAGATGATCTGCGAATGGCGCAATCAGCTAAAGCTCTGGTTCCTGCGATTATCTACATAAGCAGCTTCCTCGTATCTGTACTACTACAGGAGATTTCATGGAATGGTCATTCCTTGAAGACCTTCTTTTCTGCTGGAGCCATTATGTGGATATTTTGCGGAGCAGGGATCCTATTTTTACCTAGCAACATGAGTGCTTTCATGTTCCTCATATCAATATTTATTGGCATAGCGAATGCTTTGATGATGGTTACTGGAGTAAGCATGCAAAGCTTTTTAATTGATACAGATCTCAATGGATGTGCATTTGTATGTGGATCTTTAAGCTTCTTGGACAAAATCTCATGTGGGCTTGCCTTATTTGTTCTTCAGTCCTATCAAAGTAACAGATTCATACAGGAAAACCATTCAAATCATGTCAACATCTCAGTCACGAGATTTGGATTGGGTCTTGTTCCGGCGTTATGTGCACTTGTCTCTGTGGTAGTCACATACACCATGAAACTCCAAACTGCTCGCTGTAAACCTTTGATGGAGCCTCTATTGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_2

Protein Analysis

454

Amino Acids

49.59

Weight (kDa)

8.64

Isoelectric Point (pI)

29.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44280 AT2G44280 AT2G44280 AT2G44280 AT3G60070 AT3G60070 AT3G60070 AT3G60070 AT3G60070 AT3G60070
fragaria_vesca	FvH4_c5g00010
malus_domestica	MD02G1320400.v1.1
prunus_persica	Prupe.2G001700_v2.0.a1 Prupe.2G001700_v2.0.a1 Prupe.2G001700_v2.0.a1 Prupe.2G001700_v2.0.a1 Prupe.2G001700_v2.0.a1
pyrus_communis	pycom02g26830
rosa_chinensis	RchiOBHm_Chr1g0313141
rosa_laevigata	RLG00000030819
rosa_multiflora	Rmu_sc0001606.1_g000018
rosa_roxburghii	Rroxscaffold_4G00332430
rosa_rugosa	RorugPtG0000900.1 RorugPtG0001000
rosa_samantha	Rh1AG001100 Rh1CG003300 Rh1CG005800 Rh1DG001100
rosa_wichuraiana	Rw1G000020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	332
AccB7I	CCANNNNNTGG	1 cut(s)	957
AciI	CCGC	2 cut(s)	586, 969
AclI	AACGTT	1 cut(s)	390
AclWI	GGATC	3 cut(s)	973, 986, 1135
AcsI	RAATTY	3 cut(s)	324, 448, 576
AcuI	CTGAAG	1 cut(s)	1163
AfaI	GTAC	2 cut(s)	584, 891
AfiI	CCNNNNNNNGG	1 cut(s)	957
AflIII	ACRYGT	1 cut(s)	420
AgsI	TTSAA	8 cut(s)	247, 433, 453, 575, 696, 721, 928, 1221
AjnI	CCWGG	1 cut(s)	764
AluBI	AGCT	8 cut(s)	191, 473, 477, 839, 845, 876, 1083, 1137
AluI	AGCT	8 cut(s)	191, 473, 477, 839, 845, 876, 1083, 1137
Alw21I	GWGCWC	1 cut(s)	1282
Alw26I	GTCTC	2 cut(s)	61, 1291
Alw44I	GTGCAC	1 cut(s)	1278
AlwI	GGATC	3 cut(s)	973, 986, 1135
AlwNI	CAGNNNCTG	1 cut(s)	269
Ama87I	CYCGRG	1 cut(s)	549
ApaLI	GTGCAC	1 cut(s)	1278
ApeKI	GCWGC	6 cut(s)	161, 260, 377, 401, 621, 873
ApoI	RAATTY	3 cut(s)	324, 448, 576
Asp700I	GAANNNNTTC	1 cut(s)	932
AspLEI	GCGC	2 cut(s)	677, 832
AsuNHI	GCTAGC	2 cut(s)	469, 473
AvaI	CYCGRG	1 cut(s)	549
BaeGI	GKGCMC	1 cut(s)	1282
BamHI	GGATCC	1 cut(s)	978
BanI	GGYRCC	1 cut(s)	332
BauI	CACGAG	1 cut(s)	1243
BbsI	GAAGAC	1 cut(s)	935
Bbv12I	GWGCWC	1 cut(s)	1282
BbvCI	CCTCAGC	1 cut(s)	509
BbvI	GCAGC	6 cut(s)	148, 247, 388, 389, 608, 885
BccI	CCATC	4 cut(s)	188, 389, 1051, 1336
BcgI	CGANNNNNNTGC	2 cut(s)	862, 896
BciT130I	CCWGG	1 cut(s)	766
BcoDI	GTCTC	2 cut(s)	61, 1291
BfaI	CTAG	4 cut(s)	470, 474, 770, 993
BfmI	CTRYAG	2 cut(s)	261, 896
BglII	AGATCT	1 cut(s)	1099
BisI	GCNGC	6 cut(s)	162, 261, 378, 402, 622, 874
BlsI	GCNGC	6 cut(s)	163, 262, 379, 403, 623, 875
Bme1390I	CCNGG	1 cut(s)	766
BmeT110I	CYCGRG	1 cut(s)	549
BmiI	GGNNCC	5 cut(s)	334, 852, 949, 980, 1347
BmrFI	CCNGG	1 cut(s)	766
BmsI	GCATC	2 cut(s)	148, 608
BmtI	GCTAGC	2 cut(s)	473, 477
BpiI	GAAGAC	1 cut(s)	935
BpmI	CTGGAG	2 cut(s)	966, 1086
Bpu10I	CCTNAGC	1 cut(s)	509
BsaBI	GATNNNNATC	1 cut(s)	1098
BsaJI	CCNNGG	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	1 cut(s)	957
Bse1I	ACTGG	2 cut(s)	719, 1069
Bse3DI	GCAATG	1 cut(s)	347
Bse8I	GATNNNNATC	1 cut(s)	1098
BseBI	CCWGG	1 cut(s)	766
BseDI	CCNNGG	1 cut(s)	152
BseGI	GGATG	3 cut(s)	163, 623, 1115
BseJI	GATNNNNATC	1 cut(s)	1098
BseLI	CCNNNNNNNGG	1 cut(s)	957
BseMI	GCAATG	1 cut(s)	347
BseMII	CTCAG	3 cut(s)	422, 523, 1251
BseNI	ACTGG	2 cut(s)	719, 1069
BseSI	GKGCMC	1 cut(s)	1282
BseXI	GCAGC	6 cut(s)	148, 247, 388, 389, 608, 885
BshNI	GGYRCC	1 cut(s)	332
BsiHKAI	GWGCWC	1 cut(s)	1282
BsiHKCI	CYCGRG	1 cut(s)	549
BsiSI	CCGG	1 cut(s)	1268
BslI	CCNNNNNNNGG	1 cut(s)	957
BsmAI	GTCTC	2 cut(s)	61, 1291
BsmBI	CGTCTC	1 cut(s)	61
BsmI	GAATGC	2 cut(s)	800, 1051
BsoBI	CYCGRG	1 cut(s)	549
Bsp1286I	GDGCHC	1 cut(s)	1282
Bsp143I	GATC	5 cut(s)	229, 817, 978, 1099, 1127
BspACI	CCGC	2 cut(s)	586, 969
BspCNI	CTCAG	3 cut(s)	421, 522, 1250
BspLI	GGNNCC	5 cut(s)	334, 852, 949, 980, 1347
BspMAI	CTGCAG	1 cut(s)	265
BspOI	GCTAGC	2 cut(s)	473, 477
BspPI	GGATC	3 cut(s)	973, 986, 1135
BspT107I	GGYRCC	1 cut(s)	332
BsrDI	GCAATG	1 cut(s)	347
BsrI	ACTGG	2 cut(s)	719, 1069
BssECI	CCNNGG	1 cut(s)	152
BssMI	GATC	5 cut(s)	229, 817, 978, 1099, 1127
BssSI	CACGAG	1 cut(s)	1243
BssT1I	CCWWGG	1 cut(s)	152
Bst2BI	CACGAG	1 cut(s)	1243
Bst2UI	CCWGG	1 cut(s)	766
Bst4CI	ACNGT	7 cut(s)	55, 68, 126, 169, 358, 368, 689
Bst6I	CTCTTC	1 cut(s)	343
BstAPI	GCANNNNNTGC	1 cut(s)	797
BstC8I	GCNNGC	9 cut(s)	217, 258, 265, 310, 471, 475, 1076, 1164, 1327
BstDEI	CTNAG	3 cut(s)	408, 509, 1237
BstF5I	GGATG	3 cut(s)	163, 623, 1115
BstHHI	GCGC	2 cut(s)	677, 832
BstKTI	GATC	5 cut(s)	232, 820, 981, 1102, 1130
BstMAI	GTCTC	2 cut(s)	61, 1291
BstMBI	GATC	5 cut(s)	229, 817, 978, 1099, 1127
BstMWI	GCNNNNNNNGC	6 cut(s)	766, 797, 829, 836, 1080, 1277
BstNI	CCWGG	1 cut(s)	766
BstNSI	RCATGY	4 cut(s)	260, 424, 566, 1078
BstSCI	CCNGG	1 cut(s)	764
BstSFI	CTRYAG	2 cut(s)	261, 896
BstSLI	GKGCMC	1 cut(s)	1282
BstV1I	GCAGC	6 cut(s)	148, 247, 388, 389, 608, 885
BstV2I	GAAGAC	1 cut(s)	935
BstX2I	RGATCY	3 cut(s)	978, 1099, 1127
BstXI	CCANNNNNNTGG	1 cut(s)	772
BstYI	RGATCY	3 cut(s)	978, 1099, 1127
BtsCI	GGATG	3 cut(s)	163, 623, 1115
BtsIMutI	CAGTG	1 cut(s)	12
Cac8I	GCNNGC	9 cut(s)	217, 258, 265, 310, 471, 475, 1076, 1164, 1327
CaiI	CAGNNNCTG	1 cut(s)	269
CfoI	GCGC	2 cut(s)	677, 832
Csp6I	GTAC	2 cut(s)	583, 890
CviQI	GTAC	2 cut(s)	583, 890
DdeI	CTNAG	3 cut(s)	408, 509, 1237
DpnI	GATC	5 cut(s)	231, 819, 980, 1101, 1129
DpnII	GATC	5 cut(s)	229, 817, 978, 1099, 1127
Eam1104I	CTCTTC	1 cut(s)	343
EarI	CTCTTC	1 cut(s)	343
Eco130I	CCWWGG	1 cut(s)	152
Eco57I	CTGAAG	1 cut(s)	1163
Eco88I	CYCGRG	1 cut(s)	549
EcoRI	GAATTC	1 cut(s)	448
EcoRII	CCWGG	1 cut(s)	764
EcoT14I	CCWWGG	1 cut(s)	152
ErhI	CCWWGG	1 cut(s)	152
Esp3I	CGTCTC	1 cut(s)	61
FalI	AAGNNNNNCTT	2 cut(s)	920, 952
FauNDI	CATATG	1 cut(s)	78
Fnu4HI	GCNGC	6 cut(s)	162, 261, 378, 402, 622, 874
FokI	GGATG	3 cut(s)	170, 630, 1122
Fsp4HI	GCNGC	6 cut(s)	162, 261, 378, 402, 622, 874
FspBI	CTAG	4 cut(s)	470, 474, 770, 993
GlaI	GCGC	2 cut(s)	676, 831
GluI	GCNGC	6 cut(s)	162, 261, 378, 402, 622, 874
GsuI	CTGGAG	2 cut(s)	966, 1086
HapII	CCGG	1 cut(s)	1268
HhaI	GCGC	2 cut(s)	677, 832
Hin6I	GCGC	2 cut(s)	675, 830
HinP1I	GCGC	2 cut(s)	675, 830
HincII	GTYRAC	1 cut(s)	1231
HindII	GTYRAC	1 cut(s)	1231
HindIII	AAGCTT	2 cut(s)	1081, 1135
HinfI	GANTC	2 cut(s)	26, 1200
HpaII	CCGG	1 cut(s)	1268
Hpy166II	GTNNAC	4 cut(s)	111, 1231, 1280, 1334
Hpy188III	TCNNGA	3 cut(s)	130, 721, 1243
Hpy8I	GTNNAC	4 cut(s)	111, 1231, 1280, 1334
HpyAV	CCTTC	1 cut(s)	943
HpyCH4III	ACNGT	7 cut(s)	55, 68, 126, 169, 358, 368, 689
HpyCH4IV	ACGT	1 cut(s)	390
HpyF10VI	GCNNNNNNNGC	6 cut(s)	766, 797, 829, 836, 1080, 1277
HpyF3I	CTNAG	3 cut(s)	408, 509, 1237
HpySE526I	ACGT	1 cut(s)	390
HspAI	GCGC	2 cut(s)	675, 830
Kzo9I	GATC	5 cut(s)	229, 817, 978, 1099, 1127
LmnI	GCTCC	3 cut(s)	947, 971, 1345
Lsp1109I	GCAGC	6 cut(s)	148, 247, 388, 389, 608, 885
LweI	GCATC	2 cut(s)	148, 608
MaeI	CTAG	4 cut(s)	470, 474, 770, 993
MaeII	ACGT	1 cut(s)	390
MaeIII	GTNAC	6 cut(s)	362, 544, 1060, 1193, 1240, 1297
MalI	GATC	5 cut(s)	231, 819, 980, 1101, 1129
MboI	GATC	5 cut(s)	229, 817, 978, 1099, 1127
MboII	GAAGA	4 cut(s)	285, 330, 940, 1169
MflI	RGATCY	3 cut(s)	978, 1099, 1127
MhlI	GDGCHC	1 cut(s)	1282
MluCI	AATT	7 cut(s)	248, 324, 433, 448, 576, 606, 1089
MnlI	CCTC	5 cut(s)	346, 518, 890, 1028, 1359
MroXI	GAANNNNTTC	1 cut(s)	932
MseI	TTAA	5 cut(s)	84, 387, 665, 1088, 1133
MslI	CAYNNNNRTG	2 cut(s)	425, 1120
MspA1I	CMGCKG	1 cut(s)	588
MspI	CCGG	1 cut(s)	1268
MspR9I	CCNGG	1 cut(s)	766
Mva1269I	GAATGC	2 cut(s)	800, 1051
MvaI	CCWGG	1 cut(s)	766
MwoI	GCNNNNNNNGC	6 cut(s)	766, 797, 829, 836, 1080, 1277
NdeI	CATATG	1 cut(s)	78
NdeII	GATC	5 cut(s)	229, 817, 978, 1099, 1127
NheI	GCTAGC	2 cut(s)	469, 473
NlaIV	GGNNCC	5 cut(s)	334, 852, 949, 980, 1347
NmeAIII	GCCGAG	1 cut(s)	624
NmuCI	GTSAC	3 cut(s)	544, 1240, 1297
NspI	RCATGY	4 cut(s)	260, 424, 566, 1078
PaeI	GCATGC	2 cut(s)	260, 1078
PciI	ACATGT	1 cut(s)	420
PctI	GAATGC	2 cut(s)	800, 1051
PdmI	GAANNNNTTC	1 cut(s)	932
PfeI	GAWTC	2 cut(s)	26, 1200
PflMI	CCANNNNNTGG	1 cut(s)	957
PkrI	GCNGC	6 cut(s)	163, 262, 379, 403, 623, 875
PscI	ACATGT	1 cut(s)	420
Psp1406I	AACGTT	1 cut(s)	390
Psp6I	CCWGG	1 cut(s)	764
PspGI	CCWGG	1 cut(s)	764
PspN4I	GGNNCC	5 cut(s)	334, 852, 949, 980, 1347
PstI	CTGCAG	1 cut(s)	265
PstNI	CAGNNNCTG	1 cut(s)	269
PsuI	RGATCY	3 cut(s)	978, 1099, 1127
RsaI	GTAC	2 cut(s)	584, 891
RsaNI	GTAC	2 cut(s)	583, 890
RseI	CAYNNNNRTG	2 cut(s)	425, 1120
SaqAI	TTAA	5 cut(s)	84, 387, 665, 1088, 1133
SatI	GCNGC	6 cut(s)	162, 261, 378, 402, 622, 874
Sau3AI	GATC	5 cut(s)	229, 817, 978, 1099, 1127
ScrFI	CCNGG	1 cut(s)	766
SduI	GDGCHC	1 cut(s)	1282
SfaNI	GCATC	2 cut(s)	148, 608
SfcI	CTRYAG	2 cut(s)	261, 896
SmiMI	CAYNNNNRTG	2 cut(s)	425, 1120
SphI	GCATGC	2 cut(s)	260, 1078
Sse9I	AATT	7 cut(s)	248, 324, 433, 448, 576, 606, 1089
SsiI	CCGC	2 cut(s)	586, 969
SspI	AATATT	1 cut(s)	1029
SspMI	CTAG	4 cut(s)	470, 474, 770, 993
StyD4I	CCNGG	1 cut(s)	764
StyI	CCWWGG	1 cut(s)	152
TaaI	ACNGT	7 cut(s)	55, 68, 126, 169, 358, 368, 689
TaiI	ACGT	1 cut(s)	393
TaqI	TCGA	1 cut(s)	481
TasI	AATT	7 cut(s)	248, 324, 433, 448, 576, 606, 1089
TatI	WGTACW	1 cut(s)	889
TfiI	GAWTC	2 cut(s)	26, 1200
Tru1I	TTAA	5 cut(s)	84, 387, 665, 1088, 1133
Tru9I	TTAA	5 cut(s)	84, 387, 665, 1088, 1133
TscAI	CASTG	1 cut(s)	19
TseFI	GTSAC	3 cut(s)	544, 1240, 1297
TseI	GCWGC	6 cut(s)	161, 260, 377, 401, 621, 873
Tsp45I	GTSAC	3 cut(s)	544, 1240, 1297
TspDTI	ATGAA	9 cut(s)	18, 330, 601, 629, 693, 897, 1000, 1192, 1325
TspGWI	ACGGA	1 cut(s)	286
TspRI	CASTG	1 cut(s)	19
Van91I	CCANNNNNTGG	1 cut(s)	957
VneI	GTGCAC	1 cut(s)	1278
XapI	RAATTY	3 cut(s)	324, 448, 576
XceI	RCATGY	4 cut(s)	260, 424, 566, 1078
XmnI	GAANNNNTTC	1 cut(s)	932
XspI	CTAG	4 cut(s)	470, 474, 770, 993

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.