Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001606.1

Orthogroup ID

OG0005390

Physical Location & Seq

Genomic Coordinates Reverse (-)

72676 .. 83126

Gene Structure 10451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001606.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

atgcataatgttactgaagatgatgatgattcagtcacaaagccccttggaaggtgttctgtcatgtattatggcgtgggccatatgctcaatgatatcactgcttcctgttggtttacatatctcttgttattcttgacagatattggactatcccccagggatgctgccactgtaatgctatctggtcaaatagctgatggatttgcaaccatatttgctggcgaactgatagacagatttggacatttcaaattgtggcatggtgcaggctctatgttggttgctgtttcattttcttctgtttttggtggttgcgtaccgtgtaaaatttttggtacctcttcaccagcattgagaactgttggttacagcatttttgctgctatctttaatgtgggttgggcagctacccaggtctcgcacatgtctatgctgaattgcattacactgaattcaacaagcagagtggtgctcgctagctgtcggaatgcttttactatggttgccaacctgagcttgtatgcggttgcttttataatctttgctgtcacgatagcaagaacacatgccgatattgaaaatcagtaccgctggattgcatatttgtcaatcttcataggatgctgctttgttggtatctttcaactcggcaccaaagagccaagattaaaggtaggtgtacaaggaagtaattcttcaaggattccatggacgtactggttcaagagagtgctatattatcaggttgctcttgtttatgtgcttaccagactagtggttaatgtttcacaggcatatcttgcattctatgttatagatgatctgcagatggcacaatcggctaaagctctggttcctgcgatcatctacataagtagcttcctcgtatctgtgatattgcaggagatacaatggaccggcggattcttgaaggcctactactcagctggagctattatttggatattttgtggtgcagggatcctgcttctacctagaagcttgagtgctttcatgtacattatatctatatttattggcatagcaaatgctttaatgatggtgaccggagtaagcatgcaaagtgttttaattgatacagatctcaatggctgtgcatttgtttgtggatcattcagcttcttggacaaaatctcatgtgggcttgctttatttgttcttcagtcgtatcaaagtgattcagtcatacagaatatccattctaatcatgtccacatatcagttacgagattcgggttgggtcttgttccggcattttgttcacttgtatcagtggctgttacatactcgatgaacctccactctgctcgctgcaaacctctaatggagcctctattgatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_2

Protein Analysis

455

Amino Acids

49.84

Weight (kDa)

8.15

Isoelectric Point (pI)

33.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44280 AT2G44280 AT2G44280 AT2G44280 AT3G60070 AT3G60070 AT3G60070 AT3G60070 AT3G60070 AT3G60070
fragaria_vesca	FvH4_c5g00010
malus_domestica	MD02G1320400.v1.1
prunus_persica	Prupe.2G001700_v2.0.a1 Prupe.2G001700_v2.0.a1 Prupe.2G001700_v2.0.a1 Prupe.2G001700_v2.0.a1 Prupe.2G001700_v2.0.a1
pyrus_communis	pycom02g26830
rosa_chinensis	RchiOBHm_Chr1g0313141
rosa_laevigata	RLG00000030819
rosa_multiflora	Rmu_sc0001606.1_g000018
rosa_roxburghii	Rroxscaffold_4G00332430
rosa_rugosa	RorugPtG0000900.1 RorugPtG0001000
rosa_samantha	Rh1AG001100 Rh1CG003300 Rh1CG005800 Rh1DG001100
rosa_wichuraiana	Rw1G000020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	539
Acc65I	GGTACC	1 cut(s)	338
AccB1I	GGYRCC	2 cut(s)	338, 653
AciI	CCGC	3 cut(s)	527, 592, 924
AclWI	GGATC	3 cut(s)	979, 992, 1141
AcsI	RAATTY	2 cut(s)	330, 454
AcuI	CTGAAG	2 cut(s)	36, 1169
AfaI	GTAC	6 cut(s)	321, 340, 590, 684, 719, 1022
AfiI	CCNNNNNNNGG	1 cut(s)	51
AflIII	ACRYGT	1 cut(s)	426
AgsI	TTSAA	7 cut(s)	253, 459, 581, 647, 702, 727, 934
AhlI	ACTAGT	1 cut(s)	775
AjnI	CCWGG	2 cut(s)	158, 414
Alw21I	GWGCWC	1 cut(s)	477
Alw26I	GTCTC	1 cut(s)	424
AlwI	GGATC	3 cut(s)	979, 992, 1141
AlwNI	CAGNNNCTG	1 cut(s)	1301
AoxI	GGCC	2 cut(s)	79, 936
ApeKI	GCWGC	5 cut(s)	167, 383, 407, 627, 1335
ApoI	RAATTY	2 cut(s)	330, 454
Asp700I	GAANNNNTTC	2 cut(s)	55, 694
Asp718I	GGTACC	1 cut(s)	338
AspS9I	GGNCC	2 cut(s)	79, 918
AsuHPI	GGTGA	2 cut(s)	339, 1078
AsuNHI	GCTAGC	1 cut(s)	479
AvaII	GGWCC	1 cut(s)	918
BamHI	GGATCC	1 cut(s)	984
BanI	GGYRCC	2 cut(s)	338, 653
BarI	GAAGNNNNNNTAC	2 cut(s)	926, 958
Bbv12I	GWGCWC	1 cut(s)	477
BbvI	GCAGC	5 cut(s)	154, 370, 419, 614, 1322
BccI	CCATC	3 cut(s)	194, 826, 1057
BciT130I	CCWGG	2 cut(s)	160, 416
BcoDI	GTCTC	1 cut(s)	424
BcuI	ACTAGT	1 cut(s)	775
BfaI	CTAG	3 cut(s)	480, 776, 999
BfmI	CTRYAG	1 cut(s)	827
BglII	AGATCT	1 cut(s)	1105
BisI	GCNGC	5 cut(s)	168, 384, 408, 628, 1336
BlsI	GCNGC	5 cut(s)	169, 385, 409, 629, 1337
Bme1390I	CCNGG	2 cut(s)	160, 416
Bme18I	GGWCC	1 cut(s)	918
BmgT120I	GGNCC	2 cut(s)	79, 918
BmiI	GGNNCC	5 cut(s)	340, 655, 858, 986, 1353
BmrFI	CCNGG	2 cut(s)	160, 416
BmsI	GCATC	2 cut(s)	154, 614
BmtI	GCTAGC	1 cut(s)	483
BplI	GAGNNNNNCTC	2 cut(s)	459, 491
BpmI	CTGGAG	1 cut(s)	972
Bpu10I	CCTNAGC	1 cut(s)	515
BpuEI	CTTGAG	1 cut(s)	1027
BsaBI	GATNNNNATC	1 cut(s)	1104
BsaI	GGTCTC	1 cut(s)	424
BsaJI	CCNNGG	5 cut(s)	46, 158, 159, 414, 710
BsaWI	WCCGGW	1 cut(s)	1070
Bsc4I	CCNNNNNNNGG	1 cut(s)	51
Bse118I	RCCGGY	1 cut(s)	920
Bse1I	ACTGG	1 cut(s)	725
Bse8I	GATNNNNATC	1 cut(s)	1104
BseBI	CCWGG	2 cut(s)	160, 416
BseDI	CCNNGG	5 cut(s)	46, 158, 159, 414, 710
BseGI	GGATG	2 cut(s)	169, 629
BseJI	GATNNNNATC	1 cut(s)	1104
BseLI	CCNNNNNNNGG	1 cut(s)	51
BseMII	CTCAG	2 cut(s)	506, 960
BseNI	ACTGG	1 cut(s)	725
BseXI	GCAGC	5 cut(s)	154, 370, 419, 614, 1322
BsgI	GTGCAG	2 cut(s)	288, 999
BshFI	GGCC	2 cut(s)	81, 938
BshNI	GGYRCC	2 cut(s)	338, 653
BsiHKAI	GWGCWC	1 cut(s)	477
BsiSI	CCGG	3 cut(s)	921, 1071, 1274
BslI	CCNNNNNNNGG	1 cut(s)	51
BsmAI	GTCTC	1 cut(s)	424
BsmI	GAATGC	2 cut(s)	496, 806
BsnI	GGCC	2 cut(s)	81, 938
Bso31I	GGTCTC	1 cut(s)	424
Bsp1286I	GDGCHC	1 cut(s)	477
Bsp1407I	TGTACA	2 cut(s)	682, 1020
Bsp143I	GATC	5 cut(s)	823, 864, 984, 1105, 1133
Bsp19I	CCATGG	1 cut(s)	710
BspACI	CCGC	3 cut(s)	527, 592, 924
BspANI	GGCC	2 cut(s)	81, 938
BspCNI	CTCAG	2 cut(s)	507, 959
BspLI	GGNNCC	5 cut(s)	340, 655, 858, 986, 1353
BspMAI	CTGCAG	1 cut(s)	831
BspOI	GCTAGC	1 cut(s)	483
BspPI	GGATC	3 cut(s)	979, 992, 1141
BspT107I	GGYRCC	2 cut(s)	338, 653
BspTNI	GGTCTC	1 cut(s)	424
BsrFI	RCCGGY	1 cut(s)	920
BsrGI	TGTACA	2 cut(s)	682, 1020
BsrI	ACTGG	1 cut(s)	725
BssAI	RCCGGY	1 cut(s)	920
BssECI	CCNNGG	5 cut(s)	46, 158, 159, 414, 710
BssMI	GATC	5 cut(s)	823, 864, 984, 1105, 1133
BssT1I	CCWWGG	2 cut(s)	46, 710
Bst2UI	CCWGG	2 cut(s)	160, 416
Bst4CI	ACNGT	3 cut(s)	175, 324, 364
Bst6I	CTCTTC	1 cut(s)	349
BstAPI	GCANNNNNTGC	1 cut(s)	803
BstAUI	TGTACA	2 cut(s)	682, 1020
BstC8I	GCNNGC	7 cut(s)	223, 271, 477, 481, 1082, 1170, 1333
BstDEI	CTNAG	2 cut(s)	515, 946
BstDSI	CCRYGG	1 cut(s)	710
BstEII	GGTNACC	1 cut(s)	1066
BstF5I	GGATG	2 cut(s)	169, 629
BstKTI	GATC	5 cut(s)	826, 867, 987, 1108, 1136
BstMAI	GTCTC	1 cut(s)	424
BstMBI	GATC	5 cut(s)	823, 864, 984, 1105, 1133
BstMWI	GCNNNNNNNGC	2 cut(s)	803, 842
BstNI	CCWGG	2 cut(s)	160, 416
BstNSI	RCATGY	3 cut(s)	430, 572, 1084
BstPI	GGTNACC	1 cut(s)	1066
BstSCI	CCNGG	2 cut(s)	158, 414
BstSFI	CTRYAG	1 cut(s)	827
BstV1I	GCAGC	5 cut(s)	154, 370, 419, 614, 1322
BstX2I	RGATCY	2 cut(s)	984, 1105
BstXI	CCANNNNNNTGG	1 cut(s)	778
BstYI	RGATCY	2 cut(s)	984, 1105
BsuRI	GGCC	2 cut(s)	81, 938
BtgI	CCRYGG	1 cut(s)	710
BtsCI	GGATG	2 cut(s)	169, 629
BtsI	GCAGTG	1 cut(s)	99
BtsIMutI	CAGTG	4 cut(s)	99, 171, 449, 1302
Cac8I	GCNNGC	7 cut(s)	223, 271, 477, 481, 1082, 1170, 1333
CaiI	CAGNNNCTG	1 cut(s)	1301
Cfr10I	RCCGGY	1 cut(s)	920
Cfr13I	GGNCC	2 cut(s)	79, 918
Csp6I	GTAC	6 cut(s)	320, 339, 589, 683, 718, 1021
CspCI	CAANNNNNGTGG	2 cut(s)	450, 485
CviAII	CATG	9 cut(s)	64, 263, 427, 569, 711, 1018, 1081, 1161, 1232
CviQI	GTAC	6 cut(s)	320, 339, 589, 683, 718, 1021
DdeI	CTNAG	2 cut(s)	515, 946
DpnI	GATC	5 cut(s)	825, 866, 986, 1107, 1135
DpnII	GATC	5 cut(s)	823, 864, 984, 1105, 1133
Eam1104I	CTCTTC	1 cut(s)	349
EarI	CTCTTC	1 cut(s)	349
EciI	GGCGGA	1 cut(s)	939
Eco130I	CCWWGG	2 cut(s)	46, 710
Eco147I	AGGCCT	1 cut(s)	938
Eco31I	GGTCTC	1 cut(s)	424
Eco32I	GATATC	1 cut(s)	97
Eco47I	GGWCC	1 cut(s)	918
Eco57I	CTGAAG	2 cut(s)	36, 1169
Eco91I	GGTNACC	1 cut(s)	1066
EcoO65I	GGTNACC	1 cut(s)	1066
EcoRI	GAATTC	1 cut(s)	454
EcoRII	CCWGG	2 cut(s)	158, 414
EcoRV	GATATC	1 cut(s)	97
EcoT14I	CCWWGG	2 cut(s)	46, 710
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	46, 710
FaeI	CATG	9 cut(s)	67, 266, 430, 572, 714, 1021, 1084, 1164, 1235
FalI	AAGNNNNNCTT	2 cut(s)	682, 714
FatI	CATG	9 cut(s)	63, 262, 426, 568, 710, 1017, 1080, 1160, 1231
FauNDI	CATATG	1 cut(s)	84
Fnu4HI	GCNGC	5 cut(s)	168, 384, 408, 628, 1336
FokI	GGATG	2 cut(s)	176, 636
Fsp4HI	GCNGC	5 cut(s)	168, 384, 408, 628, 1336
FspBI	CTAG	3 cut(s)	480, 776, 999
GluI	GCNGC	5 cut(s)	168, 384, 408, 628, 1336
GsuI	CTGGAG	1 cut(s)	972
HaeIII	GGCC	2 cut(s)	81, 938
HapII	CCGG	3 cut(s)	921, 1071, 1274
Hin1II	CATG	9 cut(s)	67, 266, 430, 572, 714, 1021, 1084, 1164, 1235
HindIII	AAGCTT	1 cut(s)	1003
HinfI	GANTC	5 cut(s)	29, 706, 927, 1202, 1254
HpaII	CCGG	3 cut(s)	921, 1071, 1274
HphI	GGTGA	2 cut(s)	339, 1078
Hpy166II	GTNNAC	4 cut(s)	117, 683, 1237, 1286
Hpy188I	TCNGA	1 cut(s)	489
Hpy188III	TCNNGA	4 cut(s)	136, 553, 727, 931
Hpy8I	GTNNAC	4 cut(s)	117, 683, 1237, 1286
HpyAV	CCTTC	2 cut(s)	45, 928
HpyCH4III	ACNGT	3 cut(s)	175, 324, 364
HpyCH4IV	ACGT	1 cut(s)	716
HpyF10VI	GCNNNNNNNGC	2 cut(s)	803, 842
HpyF3I	CTNAG	2 cut(s)	515, 946
HpySE526I	ACGT	1 cut(s)	716
Hsp92II	CATG	9 cut(s)	67, 266, 430, 572, 714, 1021, 1084, 1164, 1235
KpnI	GGTACC	1 cut(s)	342
Kzo9I	GATC	5 cut(s)	823, 864, 984, 1105, 1133
LmnI	GCTCC	2 cut(s)	953, 1351
Lsp1109I	GCAGC	5 cut(s)	154, 370, 419, 614, 1322
LweI	GCATC	2 cut(s)	154, 614
MaeI	CTAG	3 cut(s)	480, 776, 999
MaeII	ACGT	1 cut(s)	716
MaeIII	GTNAC	7 cut(s)	10, 34, 368, 550, 1066, 1246, 1303
MalI	GATC	5 cut(s)	825, 866, 986, 1107, 1135
MboI	GATC	5 cut(s)	823, 864, 984, 1105, 1133
MboII	GAAGA	6 cut(s)	29, 291, 336, 607, 690, 1175
MflI	RGATCY	2 cut(s)	984, 1105
MhlI	GDGCHC	1 cut(s)	477
MluCI	AATT	6 cut(s)	254, 330, 439, 454, 694, 1095
MmeI	TCCRAC	1 cut(s)	467
MnlI	CCTC	5 cut(s)	352, 896, 1331, 1353, 1365
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	2 cut(s)	55, 694
MseI	TTAA	5 cut(s)	393, 671, 783, 1058, 1094
MslI	CAYNNNNRTG	2 cut(s)	176, 431
MspA1I	CMGCKG	2 cut(s)	594, 950
MspI	CCGG	3 cut(s)	921, 1071, 1274
MspR9I	CCNGG	2 cut(s)	160, 416
Mva1269I	GAATGC	2 cut(s)	496, 806
MvaI	CCWGG	2 cut(s)	160, 416
MwoI	GCNNNNNNNGC	2 cut(s)	803, 842
NcoI	CCATGG	1 cut(s)	710
NdeI	CATATG	1 cut(s)	84
NdeII	GATC	5 cut(s)	823, 864, 984, 1105, 1133
NheI	GCTAGC	1 cut(s)	479
NlaIII	CATG	9 cut(s)	67, 266, 430, 572, 714, 1021, 1084, 1164, 1235
NlaIV	GGNNCC	5 cut(s)	340, 655, 858, 986, 1353
NmeAIII	GCCGAG	1 cut(s)	630
NmuCI	GTSAC	3 cut(s)	34, 550, 1066
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	3 cut(s)	430, 572, 1084
PaeI	GCATGC	1 cut(s)	1084
PasI	CCCWGGG	1 cut(s)	159
PceI	AGGCCT	1 cut(s)	938
PciI	ACATGT	1 cut(s)	426
PctI	GAATGC	2 cut(s)	496, 806
PdmI	GAANNNNTTC	2 cut(s)	55, 694
PfeI	GAWTC	5 cut(s)	29, 706, 927, 1202, 1254
PkrI	GCNGC	5 cut(s)	169, 385, 409, 629, 1337
PscI	ACATGT	1 cut(s)	426
PsiI	TTATAA	1 cut(s)	539
Psp6I	CCWGG	2 cut(s)	158, 414
PspEI	GGTNACC	1 cut(s)	1066
PspGI	CCWGG	2 cut(s)	158, 414
PspN4I	GGNNCC	5 cut(s)	340, 655, 858, 986, 1353
PspPI	GGNCC	2 cut(s)	79, 918
PstI	CTGCAG	1 cut(s)	831
PstNI	CAGNNNCTG	1 cut(s)	1301
PsuI	RGATCY	2 cut(s)	984, 1105
PvuII	CAGCTG	1 cut(s)	950
RsaI	GTAC	6 cut(s)	321, 340, 590, 684, 719, 1022
RsaNI	GTAC	6 cut(s)	320, 339, 589, 683, 718, 1021
RseI	CAYNNNNRTG	2 cut(s)	176, 431
SaqAI	TTAA	5 cut(s)	393, 671, 783, 1058, 1094
SatI	GCNGC	5 cut(s)	168, 384, 408, 628, 1336
Sau3AI	GATC	5 cut(s)	823, 864, 984, 1105, 1133
Sau96I	GGNCC	2 cut(s)	79, 918
ScrFI	CCNGG	2 cut(s)	160, 416
SduI	GDGCHC	1 cut(s)	477
SfaNI	GCATC	2 cut(s)	154, 614
SfcI	CTRYAG	1 cut(s)	827
SinI	GGWCC	1 cut(s)	918
SmiMI	CAYNNNNRTG	2 cut(s)	176, 431
SmlI	CTYRAG	1 cut(s)	1006
SmoI	CTYRAG	1 cut(s)	1006
SpeI	ACTAGT	1 cut(s)	775
SphI	GCATGC	1 cut(s)	1084
Sse9I	AATT	6 cut(s)	254, 330, 439, 454, 694, 1095
SseBI	AGGCCT	1 cut(s)	938
SsiI	CCGC	3 cut(s)	527, 592, 924
SspMI	CTAG	3 cut(s)	480, 776, 999
StuI	AGGCCT	1 cut(s)	938
StyD4I	CCNGG	2 cut(s)	158, 414
StyI	CCWWGG	2 cut(s)	46, 710
TaaI	ACNGT	3 cut(s)	175, 324, 364
TaiI	ACGT	1 cut(s)	719
TaqI	TCGA	1 cut(s)	1313
TasI	AATT	6 cut(s)	254, 330, 439, 454, 694, 1095
TatI	WGTACW	2 cut(s)	682, 1020
TfiI	GAWTC	5 cut(s)	29, 706, 927, 1202, 1254
Tru1I	TTAA	5 cut(s)	393, 671, 783, 1058, 1094
Tru9I	TTAA	5 cut(s)	393, 671, 783, 1058, 1094
TscAI	CASTG	4 cut(s)	106, 178, 456, 1302
TseFI	GTSAC	3 cut(s)	34, 550, 1066
TseI	GCWGC	5 cut(s)	167, 383, 407, 627, 1335
Tsp45I	GTSAC	3 cut(s)	34, 550, 1066
TspDTI	ATGAA	4 cut(s)	282, 607, 1006, 1331
TspRI	CASTG	4 cut(s)	106, 178, 456, 1302
VpaK11BI	GGWCC	1 cut(s)	918
XapI	RAATTY	2 cut(s)	330, 454
XceI	RCATGY	3 cut(s)	430, 572, 1084
XcmI	CCANNNNNNNNNTGG	1 cut(s)	717
XmnI	GAANNNNTTC	2 cut(s)	55, 694
XspI	CTAG	3 cut(s)	480, 776, 999
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.