Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0002488

Physical Location & Seq

Genomic Coordinates Reverse (-)

4726720 .. 4727670

Gene Structure 951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g05980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGTACTATGCTAAGCAGGGAATTATAACTGAGGAGATGTTGTACTGTGCCGCTCGTGAGAAGCTTGACCCAGAGTTTGTGAGATCAGAAGTAGCTCGTGGGCGGGCAATTATCCCTTCCAATAAGAAACACTTGGAGCTGGAGCCAATGATTGTCGGAAGAAAATTTTTGGTCAAAGTTAATGCAAACATTGGAAATTCTGCTGTTGCCAGCTCTATTGAAGAGGAAGTTTACAAGGTCCAATGGGCAACTATGTGGGGTGCTGACACTGTTATGGACCTCTCTACAGGACGCCACATCCATGAGACCCGTGAATGGATCCTGCGTAACTCTCCTGTGCCAGTAGGGACTGTACCCATTTATCAAGCGCTTGAAAAAGTGGACGGAATTGCAGAAAACCTTAACTGGGAAGTGTTCAGAGAAACTCTTATTGAACAAGCCGAGCAGGGTGTAGATTACTTCACCATCCATGCTGGGGTTCTACTACGGTACATCCCACTAACAGCAAAGCGTATGACTGGTATTGTTTCACGAGGAGGATCCATTCATGCAAAGTGGTGCTTAGCTTATCACAAAGAGAATTTCGCTTACGAGCACTGGGATGACATACTTGACATCTGCAATCAATATGATGTGGCCCTGTCAATTGGTGATGGGTTGAGACCTGGTTCCATTTATGATGCCAACGACACTGCACAGTTCGCAGAACTCTTAACTCAGGGCGAACTGACCCGTAGGGCATGGGAAAAGGATGTTCAAGTCATGAATGAAGGACCTGGACATGTTCCAATGCACAAAATTCCTGAAAACATGAAAAAACAGCTTGAATGGTGTAACGAAGCGCCTTTCTACACTCTTGGTCCTCTAACAACTGATATTGCTCCAGGATATGATCGATCAAAGATAATGACATCACCTCTGCCATTGGTGCTGCCAACATTGGGGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006766 GO:0006767 GO:0006772 GO:0006790 GO:0006807 GO:0007584 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009228 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010266 GO:0014070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017144 GO:0018130 GO:0019144 GO:0019438 GO:0019904 GO:0031667 GO:0033273 GO:0034641 GO:0042221 GO:0042364 GO:0042493 GO:0042723 GO:0042724 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048037 GO:0050896 GO:0051536 GO:0051540 GO:0071704 GO:0072527 GO:0072528 GO:0080041 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko00730 ko01100 map00730 map01100

Pfam Domains

Protein Families

ThiC-associated ThiC_Rad_SAM

Protein Analysis

317

Amino Acids

35.73

Weight (kDa)

5.45

Isoelectric Point (pI)

42.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ThiC_Rad_SAM	PF01964	1 - 299	3.1e-129	Radical SAM ThiC family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29630 AT2G29630 AT2G29630 AT2G29630
fragaria_vesca	FvH4_3g38200 FvH4_3g38200 FvH4_3g38200 FvH4_3g38200
malus_domestica	MD03G1074000.v1.1 MD11G1080300.v1.1
prunus_persica	Prupe.6G060700_v2.0.a1 Prupe.6G060700_v2.0.a1 Prupe.6G060700_v2.0.a1 Prupe.6G060700_v2.0.a1 Prupe.6G060700_v2.0.a1 Prupe.6G060700_v2.0.a1 Prupe.6G060700_v2.0.a1 Prupe.6G060700_v2.0.a1 Prupe.6G060700_v2.0.a1 Prupe.6G060700_v2.0.a1 Prupe.6G060700_v2.0.a1
pyrus_communis	pycom03g05980 pycom11g06760
rosa_chinensis	RchiOBHm_Chr5g0068641 RchiOBHm_Chr5g0068681
rosa_laevigata	RLG00000035986 RLG00000035996
rosa_multiflora	Rmu_sc0000376.1_g000006
rosa_roxburghii	Rroxscaffold_1G00012160 Rroxscaffold_1G00012240
rosa_rugosa	Rorug05G0392100 Rorug05G0392200 Rorug05G0392200 Rorug05G0392200 Rorug05G0392200 Rorug05G0392200
rosa_samantha	Rh5AG449800 Rh5BG468000 Rh5CG489900 Rh5DG481300
rosa_wichuraiana	Rw5G041990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	26
AccBSI	CCGCTC	1 cut(s)	53
AciI	CCGC	2 cut(s)	51, 103
AclWI	GGATC	4 cut(s)	313, 326, 534, 547
AcsI	RAATTY	4 cut(s)	164, 196, 580, 798
AcyI	GRCGYC	1 cut(s)	292
AfaI	GTAC	4 cut(s)	5, 44, 354, 491
AfeI	AGCGCT	1 cut(s)	369
AfiI	CCNNNNNNNGG	4 cut(s)	315, 406, 475, 941
AflIII	ACRYGT	1 cut(s)	781
AgsI	TTSAA	5 cut(s)	221, 374, 434, 758, 827
AjnI	CCWGG	3 cut(s)	664, 775, 883
AluBI	AGCT	6 cut(s)	64, 95, 139, 213, 566, 823
AluI	AGCT	6 cut(s)	64, 95, 139, 213, 566, 823
Alw21I	GWGCWC	1 cut(s)	597
Alw26I	GTCTC	2 cut(s)	299, 655
AlwI	GGATC	4 cut(s)	313, 326, 534, 547
Aor51HI	AGCGCT	1 cut(s)	369
AoxI	GGCC	1 cut(s)	636
ApeKI	GCWGC	1 cut(s)	931
ApoI	RAATTY	4 cut(s)	164, 196, 580, 798
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
AspLEI	GCGC	2 cut(s)	370, 844
AspS9I	GGNCC	5 cut(s)	238, 277, 637, 773, 860
AsuHPI	GGTGA	3 cut(s)	454, 662, 906
AvaII	GGWCC	4 cut(s)	238, 277, 773, 860
BamHI	GGATCC	2 cut(s)	318, 539
BanII	GRGCYC	1 cut(s)	948
BauI	CACGAG	3 cut(s)	54, 96, 531
Bbv12I	GWGCWC	1 cut(s)	597
BbvI	GCAGC	1 cut(s)	918
BccI	CCATC	2 cut(s)	473, 647
BciT130I	CCWGG	3 cut(s)	666, 777, 885
BcoDI	GTCTC	2 cut(s)	299, 655
BfaI	CTAG	1 cut(s)	949
BfmI	CTRYAG	1 cut(s)	285
BfoI	RGCGCY	2 cut(s)	371, 845
BisI	GCNGC	2 cut(s)	51, 932
BlpI	GCTNAGC	2 cut(s)	12, 562
BlsI	GCNGC	2 cut(s)	52, 933
Bme1390I	CCNGG	3 cut(s)	666, 777, 885
Bme18I	GGWCC	4 cut(s)	238, 277, 773, 860
BmgT120I	GGNCC	5 cut(s)	238, 277, 637, 773, 860
BmiI	GGNNCC	4 cut(s)	144, 320, 541, 670
BmrFI	CCNGG	3 cut(s)	666, 777, 885
BmrI	ACTGGG	2 cut(s)	415, 607
BmsI	GCATC	1 cut(s)	670
BmuI	ACTGGG	2 cut(s)	415, 607
BpmI	CTGGAG	2 cut(s)	161, 867
Bpu1102I	GCTNAGC	2 cut(s)	12, 562
Bsa29I	ATCGAT	1 cut(s)	895
BsaHI	GRCGYC	1 cut(s)	292
BsaI	GGTCTC	2 cut(s)	299, 655
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 56
Bsc4I	CCNNNNNNNGG	4 cut(s)	315, 406, 475, 941
Bse1I	ACTGG	4 cut(s)	341, 410, 523, 602
BseBI	CCWGG	3 cut(s)	666, 777, 885
BseCI	ATCGAT	1 cut(s)	895
BseGI	GGATG	5 cut(s)	297, 465, 492, 607, 757
BseLI	CCNNNNNNNGG	4 cut(s)	315, 406, 475, 941
BseMII	CTCAG	2 cut(s)	21, 731
BseNI	ACTGG	4 cut(s)	341, 410, 523, 602
BseRI	GAGGAG	2 cut(s)	47, 549
BseXI	GCAGC	1 cut(s)	918
BseYI	CCCAGC	1 cut(s)	473
BsgI	GTGCAG	1 cut(s)	678
BshFI	GGCC	1 cut(s)	638
BshVI	ATCGAT	1 cut(s)	895
BsiHKAI	GWGCWC	1 cut(s)	597
BslFI	GGGAC	1 cut(s)	361
BslI	CCNNNNNNNGG	4 cut(s)	315, 406, 475, 941
BsmAI	GTCTC	2 cut(s)	299, 655
BsmFI	GGGAC	1 cut(s)	361
BsnI	GGCC	1 cut(s)	638
Bso31I	GGTCTC	2 cut(s)	299, 655
Bsp1286I	GDGCHC	2 cut(s)	597, 948
Bsp143I	GATC	5 cut(s)	83, 318, 539, 892, 896
Bsp1720I	GCTNAGC	2 cut(s)	12, 562
BspACI	CCGC	2 cut(s)	51, 103
BspANI	GGCC	1 cut(s)	638
BspCNI	CTCAG	2 cut(s)	22, 730
BspDI	ATCGAT	1 cut(s)	895
BspHI	TCATGA	1 cut(s)	762
BspLI	GGNNCC	4 cut(s)	144, 320, 541, 670
BspPI	GGATC	4 cut(s)	313, 326, 534, 547
BspTNI	GGTCTC	2 cut(s)	299, 655
BsrBI	CCGCTC	1 cut(s)	53
BsrI	ACTGG	4 cut(s)	341, 410, 523, 602
BssMI	GATC	5 cut(s)	83, 318, 539, 892, 896
BssNI	GRCGYC	1 cut(s)	292
BssSI	CACGAG	3 cut(s)	54, 96, 531
Bst2BI	CACGAG	3 cut(s)	54, 96, 531
Bst2UI	CCWGG	3 cut(s)	666, 777, 885
Bst4CI	ACNGT	5 cut(s)	47, 271, 352, 489, 699
Bst6I	CTCTTC	1 cut(s)	216
BstACI	GRCGYC	1 cut(s)	292
BstC8I	GCNNGC	2 cut(s)	105, 211
BstDEI	CTNAG	4 cut(s)	12, 30, 562, 717
BstF5I	GGATG	5 cut(s)	297, 465, 492, 607, 757
BstH2I	RGCGCY	2 cut(s)	371, 845
BstHHI	GCGC	2 cut(s)	370, 844
BstKTI	GATC	5 cut(s)	86, 321, 542, 895, 899
BstMAI	GTCTC	2 cut(s)	299, 655
BstMBI	GATC	5 cut(s)	83, 318, 539, 892, 896
BstMWI	GCNNNNNNNGC	2 cut(s)	701, 928
BstNI	CCWGG	3 cut(s)	666, 777, 885
BstNSI	RCATGY	1 cut(s)	785
BstSCI	CCNGG	3 cut(s)	664, 775, 883
BstSFI	CTRYAG	1 cut(s)	285
BstV1I	GCAGC	1 cut(s)	918
BstX2I	RGATCY	2 cut(s)	318, 539
BstYI	RGATCY	2 cut(s)	318, 539
Bsu15I	ATCGAT	1 cut(s)	895
BsuRI	GGCC	1 cut(s)	638
BsuTUI	ATCGAT	1 cut(s)	895
BtsCI	GGATG	5 cut(s)	297, 465, 492, 607, 757
BtsI	GCAGTG	1 cut(s)	690
BtsIMutI	CAGTG	3 cut(s)	267, 595, 690
Cac8I	GCNNGC	2 cut(s)	105, 211
CciI	TCATGA	1 cut(s)	762
CfoI	GCGC	2 cut(s)	370, 844
Cfr13I	GGNCC	5 cut(s)	238, 277, 637, 773, 860
ClaI	ATCGAT	1 cut(s)	895
CseI	GACGC	1 cut(s)	300
CsiI	ACCWGGT	1 cut(s)	664
Csp6I	GTAC	4 cut(s)	4, 43, 353, 490
CviAII	CATG	7 cut(s)	302, 470, 548, 741, 763, 782, 811
CviQI	GTAC	4 cut(s)	4, 43, 353, 490
DdeI	CTNAG	4 cut(s)	12, 30, 562, 717
DpnI	GATC	5 cut(s)	85, 320, 541, 894, 898
DpnII	GATC	5 cut(s)	83, 318, 539, 892, 896
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Eco24I	GRGCYC	1 cut(s)	948
Eco31I	GGTCTC	2 cut(s)	299, 655
Eco47I	GGWCC	4 cut(s)	238, 277, 773, 860
Eco47III	AGCGCT	1 cut(s)	369
EcoO109I	RGGNCCY	1 cut(s)	773
EcoRII	CCWGG	3 cut(s)	664, 775, 883
EcoT38I	GRGCYC	1 cut(s)	948
FaeI	CATG	7 cut(s)	305, 473, 551, 744, 766, 785, 814
FalI	AAGNNNNNCTT	4 cut(s)	116, 148, 545, 577
FaqI	GGGAC	1 cut(s)	361
FatI	CATG	7 cut(s)	301, 469, 547, 740, 762, 781, 810
FauI	CCCGC	1 cut(s)	96
Fnu4HI	GCNGC	2 cut(s)	51, 932
FokI	GGATG	5 cut(s)	284, 452, 479, 614, 764
FriOI	GRGCYC	1 cut(s)	948
Fsp4HI	GCNGC	2 cut(s)	51, 932
FspBI	CTAG	1 cut(s)	949
GlaI	GCGC	2 cut(s)	369, 843
GluI	GCNGC	2 cut(s)	51, 932
GsaI	CCCAGC	1 cut(s)	477
GsuI	CTGGAG	2 cut(s)	161, 867
HaeII	RGCGCY	2 cut(s)	371, 845
HaeIII	GGCC	1 cut(s)	638
HgaI	GACGC	1 cut(s)	300
HhaI	GCGC	2 cut(s)	370, 844
Hin1I	GRCGYC	1 cut(s)	292
Hin1II	CATG	7 cut(s)	305, 473, 551, 744, 766, 785, 814
Hin6I	GCGC	2 cut(s)	368, 842
HinP1I	GCGC	2 cut(s)	368, 842
HindIII	AAGCTT	1 cut(s)	62
HphI	GGTGA	3 cut(s)	454, 662, 906
Hpy166II	GTNNAC	2 cut(s)	232, 382
Hpy188I	TCNGA	3 cut(s)	88, 158, 419
Hpy188III	TCNNGA	4 cut(s)	56, 531, 763, 803
Hpy8I	GTNNAC	2 cut(s)	232, 382
HpyAV	CCTTC	2 cut(s)	126, 764
HpyCH4III	ACNGT	5 cut(s)	47, 271, 352, 489, 699
HpyCH4V	TGCA	6 cut(s)	185, 392, 551, 621, 695, 793
HpyF10VI	GCNNNNNNNGC	2 cut(s)	701, 928
HpyF3I	CTNAG	4 cut(s)	12, 30, 562, 717
Hsp92I	GRCGYC	1 cut(s)	292
Hsp92II	CATG	7 cut(s)	305, 473, 551, 744, 766, 785, 814
HspAI	GCGC	2 cut(s)	368, 842
Kzo9I	GATC	5 cut(s)	83, 318, 539, 892, 896
LmnI	GCTCC	3 cut(s)	136, 142, 886
Lsp1109I	GCAGC	1 cut(s)	918
LweI	GCATC	1 cut(s)	670
MabI	ACCWGGT	1 cut(s)	664
MaeI	CTAG	1 cut(s)	949
MaeIII	GTNAC	2 cut(s)	326, 833
MalI	GATC	5 cut(s)	85, 320, 541, 894, 898
MbiI	CCGCTC	1 cut(s)	53
MboI	GATC	5 cut(s)	83, 318, 539, 892, 896
MboII	GAAGA	2 cut(s)	171, 233
MfeI	CAATTG	1 cut(s)	645
MflI	RGATCY	2 cut(s)	318, 539
MhlI	GDGCHC	2 cut(s)	597, 948
MluCI	AATT	8 cut(s)	21, 108, 164, 196, 387, 580, 645, 798
MmeI	TCCRAC	1 cut(s)	136
MnlI	CCTC	7 cut(s)	25, 217, 290, 527, 530, 873, 927
MseI	TTAA	3 cut(s)	180, 402, 713
MslI	CAYNNNNRTG	3 cut(s)	272, 300, 600
MspR9I	CCNGG	3 cut(s)	666, 777, 885
MunI	CAATTG	1 cut(s)	645
MvaI	CCWGG	3 cut(s)	666, 777, 885
MwoI	GCNNNNNNNGC	2 cut(s)	701, 928
NdeII	GATC	5 cut(s)	83, 318, 539, 892, 896
NlaIII	CATG	7 cut(s)	305, 473, 551, 744, 766, 785, 814
NlaIV	GGNNCC	4 cut(s)	144, 320, 541, 670
NmeAIII	GCCGAG	1 cut(s)	466
NspI	RCATGY	1 cut(s)	785
PagI	TCATGA	1 cut(s)	762
PciI	ACATGT	1 cut(s)	781
PfoI	TCCNGGA	1 cut(s)	883
PkrI	GCNGC	2 cut(s)	52, 933
PpuMI	RGGWCCY	1 cut(s)	773
PscI	ACATGT	1 cut(s)	781
PsiI	TTATAA	1 cut(s)	26
Psp5II	RGGWCCY	1 cut(s)	773
Psp6I	CCWGG	3 cut(s)	664, 775, 883
PspFI	CCCAGC	1 cut(s)	473
PspGI	CCWGG	3 cut(s)	664, 775, 883
PspN4I	GGNNCC	4 cut(s)	144, 320, 541, 670
PspPI	GGNCC	5 cut(s)	238, 277, 637, 773, 860
PspPPI	RGGWCCY	1 cut(s)	773
PsuI	RGATCY	2 cut(s)	318, 539
RsaI	GTAC	4 cut(s)	5, 44, 354, 491
RsaNI	GTAC	4 cut(s)	4, 43, 353, 490
RseI	CAYNNNNRTG	3 cut(s)	272, 300, 600
SaqAI	TTAA	3 cut(s)	180, 402, 713
SatI	GCNGC	2 cut(s)	51, 932
Sau3AI	GATC	5 cut(s)	83, 318, 539, 892, 896
Sau96I	GGNCC	5 cut(s)	238, 277, 637, 773, 860
ScrFI	CCNGG	3 cut(s)	666, 777, 885
SduI	GDGCHC	2 cut(s)	597, 948
SexAI	ACCWGGT	1 cut(s)	664
SfaNI	GCATC	1 cut(s)	670
SfcI	CTRYAG	1 cut(s)	285
SinI	GGWCC	4 cut(s)	238, 277, 773, 860
SmiMI	CAYNNNNRTG	3 cut(s)	272, 300, 600
Sse9I	AATT	8 cut(s)	21, 108, 164, 196, 387, 580, 645, 798
SsiI	CCGC	2 cut(s)	51, 103
SspMI	CTAG	1 cut(s)	949
StyD4I	CCNGG	3 cut(s)	664, 775, 883
TaaI	ACNGT	5 cut(s)	47, 271, 352, 489, 699
TaqI	TCGA	1 cut(s)	895
TasI	AATT	8 cut(s)	21, 108, 164, 196, 387, 580, 645, 798
TatI	WGTACW	2 cut(s)	3, 42
TauI	GCSGC	1 cut(s)	53
Tru1I	TTAA	3 cut(s)	180, 402, 713
Tru9I	TTAA	3 cut(s)	180, 402, 713
TscAI	CASTG	3 cut(s)	274, 602, 697
TseI	GCWGC	1 cut(s)	931
TspDTI	ATGAA	4 cut(s)	536, 779, 783, 827
TspGWI	ACGGA	1 cut(s)	399
TspRI	CASTG	3 cut(s)	274, 602, 697
VpaK11BI	GGWCC	4 cut(s)	238, 277, 773, 860
XapI	RAATTY	4 cut(s)	164, 196, 580, 798
XceI	RCATGY	1 cut(s)	785
XspI	CTAG	1 cut(s)	949

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.