Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002488

Physical Location & Seq

Genomic Coordinates Forward (+)

75886196 .. 75912440

Gene Structure 26245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG481300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1956 bp

ATGGCATCGGTGCATAGTGCCTTGACATCAGTTGTTTGCAAGAATGGCAATCATTCTTCCCCTGCAAAGTTCCCGAGTACTCCCTTCTTGTCTGGGTTTGATGCTGTGGGGCGTCTTTCAAGCCCATTTAAGAAGGAGATATGTCTGAGTTCCATCAGCTCAGGTCCTAAGGCCACTTTAACTTTTGATCCTCCAGCAACCAATTCAGAGAAAGCCAAGGTACCCAACCTACCGAGGCATACAATTGATCCTGCTTCTCCTGATTTCCTGCCTCTTCCATCATTCGAACAGTGTTTTCCAAAGAGCACAAAAGAACAAAGGGAAGTTATTCATGAAGAAACTGGTCATGTGCTCAAAGTTCCCTTTCGACGAGTTCACCTGTCTGGAGATGAACCAGCCTTTGATAACTATGATACTAGTGGTCCGCAAAACATTAACCCACGTGTTGGGCTCCCTCAGCTAAGGAAAGATTGGGTTGACAGGCGAGAGAAACTAGGTACACCAAGATACACTCAGATGTACTATGCTAAACAGGGAATTATCACTGAGGAAATGTTGTATTGTGCCACCCGTGAGAAGCTTGATCCAGAGTTTGTGAGATCTGAAGTGGCTCGTGGGAGGGCAATTATCCCTTCCAATAAGAAGCACTTGGAGCTTGAGCCAATGATTGTTGGGAGAAAGTTTCTGGTCAAAGTTAATGCAAATATAGGAAACTCTGCTGTTGCCAGCTCTATCGAAGAGGAAGTTTATAAGGTCCAATGGGCAACTATGTGGGGTGCTGACACTGTTATGGACCTCTCTACAGGTCGCCATATCCATGAGACCCGTGAGTGGATCCTACGTAACTCTGCTGTACCAGTAGGGACTGTACCCATCTATCAAGCACTTGAAAAGGTAGATGGAATCGCAGAAAATCTTAACTGGGAAGTGTTCAGACAAACTCTGATTGAACAAGCTGAGCAGGGTGTAGATTACTTCACCATCCATGCTGGGGTTCTACTACGGTACATCCCACTAACAGCAAAGCGTATGACAGGAATTGTCTCTCGAGGAGGATCCATTCATGCAAAGTGGTGCTTAGCTTATCATAAAGAGAATTTTGCTTATGAGCACTGGGATGACATACTTGACATCTGTAATCAATATGATGTTGCCCTGTCAATAGGTGATGGCTTGAGACCCGGTTCCATTTATGATGCCAATGATACTGCACAGTTCGCGGAGCTCTTAACTCAGGGAGAACTGACCCGCAGGGCATGGGAAAAGGATGTGCAGGTAATGAATGAAGGACCTGGACATGTTCCAATGCACAAGATTCCTGAGAACATGACAAAACAGCTGGAATGGTGTAATGAAGCGCCTTTCTACACTCTCGGTCCTTTGACAACTGATATTGCTCCTGGATATGATCACATCACCTCTGCCATTGGTGCTGCCAATATTGGCGCTCTAGGCACTGCCCTTCTCTGCTATGTAACCCCTAAAGAGCATCTTGGATTGCCCAATCGGGATGACGTGAAGGCTGGAGTTATAGCATATAAAATAGCTGCTCATGCTGCTGATCTAGCCAAAGGTCATCCACATGCTCAAGAGTGGGATGACGCATTAAGCAAGGCAAGATTTGAGTTCCGGTGGATGGACCAGTTTGCTTTGTCTCTAGACCCTATGACTGCCATGTCCTTCCATGATGAAACCCTGCCTGCAGAAGGTGCCAAGGTGGCCCATTTTTGCTCTATGTGTGGGCCAAAGTTCTGTTCTATGAAGATAACAGAGGATGTTAGGAAGTATGCTGAGGAGCATGGTTATGGAACTGCTGAGGAAGCTGTGAAGCGTGGTATGGAAGCCATGAGTGCTGAGTTTCTTGCTGCCAAGAAAACTGTCAGTGGAGAACAACATGGTGAAATTGGTGGAGAAATTTACTTGCCAGAAAGTTATGTAAAATCCTCAGAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006766 GO:0006767 GO:0006772 GO:0006790 GO:0006807 GO:0007584 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009228 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010266 GO:0014070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017144 GO:0018130 GO:0019144 GO:0019438 GO:0019904 GO:0031667 GO:0033273 GO:0034641 GO:0042221 GO:0042364 GO:0042493 GO:0042723 GO:0042724 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048037 GO:0050896 GO:0051536 GO:0051540 GO:0071704 GO:0072527 GO:0072528 GO:0080041 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko00730 ko01100 map00730 map01100

Pfam Domains

Protein Families

ThiC-associated ThiC_Rad_SAM

Protein Analysis

651

Amino Acids

72.43

Weight (kDa)

5.91

Isoelectric Point (pI)

41.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ThiC_Rad_SAM	PF01964	171 - 591	4.1e-184	Radical SAM ThiC family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29630 AT2G29630 AT2G29630 AT2G29630
fragaria_vesca	FvH4_3g38200 FvH4_3g38200 FvH4_3g38200 FvH4_3g38200
malus_domestica	MD03G1074000.v1.1 MD11G1080300.v1.1
prunus_persica	Prupe.6G060700_v2.0.a1 Prupe.6G060700_v2.0.a1 Prupe.6G060700_v2.0.a1 Prupe.6G060700_v2.0.a1 Prupe.6G060700_v2.0.a1 Prupe.6G060700_v2.0.a1 Prupe.6G060700_v2.0.a1 Prupe.6G060700_v2.0.a1 Prupe.6G060700_v2.0.a1 Prupe.6G060700_v2.0.a1 Prupe.6G060700_v2.0.a1
pyrus_communis	pycom03g05980 pycom11g06760
rosa_chinensis	RchiOBHm_Chr5g0068641 RchiOBHm_Chr5g0068681
rosa_laevigata	RLG00000035986 RLG00000035996
rosa_multiflora	Rmu_sc0000376.1_g000006
rosa_roxburghii	Rroxscaffold_1G00012160 Rroxscaffold_1G00012240
rosa_rugosa	Rorug05G0392100 Rorug05G0392200 Rorug05G0392200 Rorug05G0392200 Rorug05G0392200 Rorug05G0392200
rosa_samantha	Rh5AG449800 Rh5BG468000 Rh5CG489900 Rh5DG481300
rosa_wichuraiana	Rw5G041990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	750
AasI	GACNNNNNNGTC	1 cut(s)	1675
Acc36I	ACCTGC	1 cut(s)	1264
Acc65I	GGTACC	1 cut(s)	220
AccB1I	GGYRCC	2 cut(s)	220, 1709
AccB7I	CCANNNNNTGG	1 cut(s)	446
AccII	CGCG	1 cut(s)	1220
AciI	CCGC	3 cut(s)	425, 1220, 1249
AclWI	GGATC	7 cut(s)	182, 242, 578, 829, 842, 1050, 1063
AcsI	RAATTY	2 cut(s)	1096, 1914
AcuI	CTGAAG	1 cut(s)	624
AcvI	CACGTG	1 cut(s)	443
AcyI	GRCGYC	1 cut(s)	112
AfaI	GTAC	7 cut(s)	79, 222, 499, 521, 855, 870, 1007
AfiI	CCNNNNNNNGG	6 cut(s)	446, 831, 991, 1636, 1706, 1950
AflIII	ACRYGT	2 cut(s)	442, 1297
AgsI	TTSAA	3 cut(s)	120, 890, 950
AhlI	ACTAGT	1 cut(s)	416
AjiI	CACGTC	1 cut(s)	1516
AjnI	CCWGG	2 cut(s)	1291, 1399
AjuI	GAANNNNNNNTTGG	2 cut(s)	1738, 1770
Alw21I	GWGCWC	4 cut(s)	308, 354, 1113, 1227
Alw26I	GTCTC	4 cut(s)	815, 1048, 1171, 1659
AlwI	GGATC	7 cut(s)	182, 242, 578, 829, 842, 1050, 1063
Ama87I	CYCGRG	2 cut(s)	73, 1047
AoxI	GGCC	3 cut(s)	171, 1719, 1742
ApeKI	GCWGC	4 cut(s)	1433, 1547, 1556, 1865
ApoI	RAATTY	2 cut(s)	1096, 1914
Asp700I	GAANNNNTTC	1 cut(s)	327
Asp718I	GGTACC	1 cut(s)	220
AspLEI	GCGC	2 cut(s)	1360, 1448
AspS9I	GGNCC	9 cut(s)	164, 422, 754, 793, 1289, 1376, 1639, 1720, 1742
AsuC2I	CCSGG	1 cut(s)	1182
AsuHPI	GGTGA	5 cut(s)	368, 970, 1178, 1408, 1910
AsuII	TTCGAA	1 cut(s)	285
AvaI	CYCGRG	2 cut(s)	73, 1047
AvaII	GGWCC	7 cut(s)	164, 422, 754, 793, 1289, 1376, 1639
AxyI	CCTNAGG	1 cut(s)	168
BamHI	GGATCC	2 cut(s)	834, 1055
BanI	GGYRCC	2 cut(s)	220, 1709
BanII	GRGCYC	2 cut(s)	453, 1227
BauI	CACGAG	1 cut(s)	612
BbrPI	CACGTG	1 cut(s)	443
Bbv12I	GWGCWC	4 cut(s)	308, 354, 1113, 1227
BbvCI	CCTCAGC	3 cut(s)	456, 1791, 1815
BbvI	GCAGC	4 cut(s)	1420, 1534, 1543, 1852
BccI	CCATC	7 cut(s)	161, 286, 881, 893, 989, 1163, 1630
BciT130I	CCWGG	2 cut(s)	1293, 1401
BclI	TGATCA	1 cut(s)	1408
BcnI	CCSGG	1 cut(s)	1182
BcoDI	GTCTC	4 cut(s)	815, 1048, 1171, 1659
BcuI	ACTAGT	1 cut(s)	416
BfaI	CTAG	5 cut(s)	417, 494, 1451, 1565, 1658
BfmI	CTRYAG	2 cut(s)	801, 1701
BfoI	RGCGCY	2 cut(s)	1361, 1449
BfuAI	ACCTGC	1 cut(s)	1264
BglI	GCCNNNNNGGC	1 cut(s)	1718
BglII	AGATCT	1 cut(s)	599
BisI	GCNGC	4 cut(s)	1434, 1548, 1557, 1866
BlpI	GCTNAGC	2 cut(s)	957, 1078
BlsI	GCNGC	4 cut(s)	1435, 1549, 1558, 1867
BmcAI	AGTACT	1 cut(s)	79
Bme1390I	CCNGG	3 cut(s)	1182, 1293, 1401
Bme18I	GGWCC	7 cut(s)	164, 422, 754, 793, 1289, 1376, 1639
BmeT110I	CYCGRG	2 cut(s)	73, 1047
BmgBI	CACGTC	1 cut(s)	1516
BmgT120I	GGNCC	9 cut(s)	164, 422, 754, 793, 1289, 1376, 1639, 1720, 1742
BmiI	GGNNCC	6 cut(s)	222, 452, 836, 1057, 1186, 1711
BmrFI	CCNGG	3 cut(s)	1182, 1293, 1401
BmrI	ACTGGG	2 cut(s)	931, 1123
BmsI	GCATC	4 cut(s)	14, 91, 1186, 1498
BmuI	ACTGGG	2 cut(s)	931, 1123
BpmI	CTGGAG	3 cut(s)	177, 405, 1545
Bpu10I	CCTNAGC	5 cut(s)	160, 456, 461, 1791, 1815
Bpu1102I	GCTNAGC	2 cut(s)	957, 1078
Bpu14I	TTCGAA	1 cut(s)	285
BpuEI	CTTGAG	3 cut(s)	677, 1195, 1572
BpuMI	CCSGG	1 cut(s)	1182
BsaAI	YACGTR	2 cut(s)	443, 842
BsaHI	GRCGYC	1 cut(s)	112
BsaI	GGTCTC	2 cut(s)	815, 1171
BsaJI	CCNNGG	3 cut(s)	216, 233, 1713
BsaWI	WCCGGW	1 cut(s)	1629
Bsc4I	CCNNNNNNNGG	6 cut(s)	446, 831, 991, 1636, 1706, 1950
Bse1I	ACTGG	5 cut(s)	346, 857, 926, 1118, 1642
Bse21I	CCTNAGG	1 cut(s)	168
BseBI	CCWGG	2 cut(s)	1293, 1401
BseDI	CCNNGG	3 cut(s)	216, 233, 1713
BseGI	GGATG	9 cut(s)	981, 1008, 1123, 1273, 1516, 1576, 1603, 1641, 1780
BseLI	CCNNNNNNNGG	6 cut(s)	446, 831, 991, 1636, 1706, 1950
BseNI	ACTGG	5 cut(s)	346, 857, 926, 1118, 1642
BseRI	GAGGAG	2 cut(s)	1065, 1808
BseXI	GCAGC	4 cut(s)	1420, 1534, 1543, 1852
BseYI	CCCAGC	1 cut(s)	989
BsgI	GTGCAG	2 cut(s)	1194, 1292
Bsh1236I	CGCG	1 cut(s)	1220
BshFI	GGCC	3 cut(s)	173, 1721, 1744
BshNI	GGYRCC	2 cut(s)	220, 1709
BsiHKAI	GWGCWC	4 cut(s)	308, 354, 1113, 1227
BsiHKCI	CYCGRG	2 cut(s)	73, 1047
BsiSI	CCGG	2 cut(s)	1182, 1630
BslFI	GGGAC	1 cut(s)	877
BslI	CCNNNNNNNGG	6 cut(s)	446, 831, 991, 1636, 1706, 1950
BsmAI	GTCTC	4 cut(s)	815, 1048, 1171, 1659
BsmFI	GGGAC	1 cut(s)	877
BsnI	GGCC	3 cut(s)	173, 1721, 1744
Bso31I	GGTCTC	2 cut(s)	815, 1171
BsoBI	CYCGRG	2 cut(s)	73, 1047
Bsp119I	TTCGAA	1 cut(s)	285
Bsp1286I	GDGCHC	5 cut(s)	308, 354, 453, 1113, 1227
Bsp143I	GATC	8 cut(s)	187, 247, 583, 599, 834, 1055, 1408, 1561
Bsp1720I	GCTNAGC	2 cut(s)	957, 1078
BspACI	CCGC	3 cut(s)	425, 1220, 1249
BspANI	GGCC	3 cut(s)	173, 1721, 1744
BspFNI	CGCG	1 cut(s)	1220
BspHI	TCATGA	1 cut(s)	331
BspLI	GGNNCC	6 cut(s)	222, 452, 836, 1057, 1186, 1711
BspMAI	CTGCAG	1 cut(s)	1705
BspMI	ACCTGC	1 cut(s)	1264
BspPI	GGATC	7 cut(s)	182, 242, 578, 829, 842, 1050, 1063
BspT104I	TTCGAA	1 cut(s)	285
BspT107I	GGYRCC	2 cut(s)	220, 1709
BspTNI	GGTCTC	2 cut(s)	815, 1171
BsrI	ACTGG	5 cut(s)	346, 857, 926, 1118, 1642
BssECI	CCNNGG	3 cut(s)	216, 233, 1713
BssMI	GATC	8 cut(s)	187, 247, 583, 599, 834, 1055, 1408, 1561
BssNI	GRCGYC	1 cut(s)	112
BssSI	CACGAG	1 cut(s)	612
BssT1I	CCWWGG	2 cut(s)	216, 1713
Bst2BI	CACGAG	1 cut(s)	612
Bst2UI	CCWGG	2 cut(s)	1293, 1401
Bst4CI	ACNGT	6 cut(s)	291, 787, 868, 1005, 1215, 1879
Bst6I	CTCTTC	2 cut(s)	279, 732
BstACI	GRCGYC	1 cut(s)	112
BstAPI	GCANNNNNTGC	1 cut(s)	1709
BstBAI	YACGTR	2 cut(s)	443, 842
BstBI	TTCGAA	1 cut(s)	285
BstC8I	GCNNGC	2 cut(s)	727, 1701
BstENI	CCTNNNNNAGG	2 cut(s)	1704, 1948
BstF5I	GGATG	9 cut(s)	981, 1008, 1123, 1273, 1516, 1576, 1603, 1641, 1780
BstFNI	CGCG	1 cut(s)	1220
BstH2I	RGCGCY	2 cut(s)	1361, 1449
BstHHI	GCGC	2 cut(s)	1360, 1448
BstKTI	GATC	8 cut(s)	190, 250, 586, 602, 837, 1058, 1411, 1564
BstMAI	GTCTC	4 cut(s)	815, 1048, 1171, 1659
BstMBI	GATC	8 cut(s)	187, 247, 583, 599, 834, 1055, 1408, 1561
BstNI	CCWGG	2 cut(s)	1293, 1401
BstNSI	RCATGY	2 cut(s)	1301, 1586
BstSCI	CCNGG	3 cut(s)	1180, 1291, 1399
BstSFI	CTRYAG	2 cut(s)	801, 1701
BstSNI	TACGTA	1 cut(s)	842
BstUI	CGCG	1 cut(s)	1220
BstV1I	GCAGC	4 cut(s)	1420, 1534, 1543, 1852
BstX2I	RGATCY	3 cut(s)	599, 834, 1055
BstYI	RGATCY	3 cut(s)	599, 834, 1055
Bsu36I	CCTNAGG	1 cut(s)	168
BsuRI	GGCC	3 cut(s)	173, 1721, 1744
BtrI	CACGTC	1 cut(s)	1516
BtsCI	GGATG	9 cut(s)	981, 1008, 1123, 1273, 1516, 1576, 1603, 1641, 1780
BtsI	GCAGTG	1 cut(s)	1455
BtsIMutI	CAGTG	6 cut(s)	296, 543, 783, 1111, 1455, 1888
BveI	ACCTGC	1 cut(s)	1264
Cac8I	GCNNGC	2 cut(s)	727, 1701
CciI	TCATGA	1 cut(s)	331
CfoI	GCGC	2 cut(s)	1360, 1448
Cfr13I	GGNCC	9 cut(s)	164, 422, 754, 793, 1289, 1376, 1639, 1720, 1742
CseI	GACGC	2 cut(s)	101, 1610
Csp6I	GTAC	7 cut(s)	78, 221, 498, 520, 854, 869, 1006
CviQI	GTAC	7 cut(s)	78, 221, 498, 520, 854, 869, 1006
DpnI	GATC	8 cut(s)	189, 249, 585, 601, 836, 1057, 1410, 1563
DpnII	GATC	8 cut(s)	187, 247, 583, 599, 834, 1055, 1408, 1561
DrdI	GACNNNNNNGTC	1 cut(s)	1675
DseDI	GACNNNNNNGTC	1 cut(s)	1675
Eam1104I	CTCTTC	2 cut(s)	279, 732
EarI	CTCTTC	2 cut(s)	279, 732
Ecl136II	GAGCTC	1 cut(s)	1225
Eco105I	TACGTA	1 cut(s)	842
Eco130I	CCWWGG	2 cut(s)	216, 1713
Eco24I	GRGCYC	2 cut(s)	453, 1227
Eco31I	GGTCTC	2 cut(s)	815, 1171
Eco47I	GGWCC	7 cut(s)	164, 422, 754, 793, 1289, 1376, 1639
Eco53kI	GAGCTC	1 cut(s)	1225
Eco57I	CTGAAG	1 cut(s)	624
Eco72I	CACGTG	1 cut(s)	443
Eco81I	CCTNAGG	1 cut(s)	168
Eco88I	CYCGRG	2 cut(s)	73, 1047
EcoICRI	GAGCTC	1 cut(s)	1225
EcoNI	CCTNNNNNAGG	2 cut(s)	1704, 1948
EcoO109I	RGGNCCY	2 cut(s)	164, 1289
EcoRII	CCWGG	2 cut(s)	1291, 1399
EcoT14I	CCWWGG	2 cut(s)	216, 1713
EcoT38I	GRGCYC	2 cut(s)	453, 1227
ErhI	CCWWGG	2 cut(s)	216, 1713
FalI	AAGNNNNNCTT	6 cut(s)	632, 664, 1061, 1093, 1476, 1508
FaqI	GGGAC	1 cut(s)	877
FauI	CCCGC	1 cut(s)	1256
FbaI	TGATCA	1 cut(s)	1408
Fnu4HI	GCNGC	4 cut(s)	1434, 1548, 1557, 1866
FokI	GGATG	9 cut(s)	968, 995, 1130, 1280, 1523, 1563, 1610, 1648, 1787
FriOI	GRGCYC	2 cut(s)	453, 1227
Fsp4HI	GCNGC	4 cut(s)	1434, 1548, 1557, 1866
FspBI	CTAG	5 cut(s)	417, 494, 1451, 1565, 1658
GlaI	GCGC	2 cut(s)	1359, 1447
GluI	GCNGC	4 cut(s)	1434, 1548, 1557, 1866
GsaI	CCCAGC	1 cut(s)	993
GsuI	CTGGAG	3 cut(s)	177, 405, 1545
HaeII	RGCGCY	2 cut(s)	1361, 1449
HaeIII	GGCC	3 cut(s)	173, 1721, 1744
HapII	CCGG	2 cut(s)	1182, 1630
HgaI	GACGC	2 cut(s)	101, 1610
HhaI	GCGC	2 cut(s)	1360, 1448
Hin1I	GRCGYC	1 cut(s)	112
Hin6I	GCGC	2 cut(s)	1358, 1446
HinP1I	GCGC	2 cut(s)	1358, 1446
HincII	GTYRAC	1 cut(s)	478
HindII	GTYRAC	1 cut(s)	478
HindIII	AAGCTT	1 cut(s)	578
HinfI	GANTC	2 cut(s)	903, 1315
HpaII	CCGG	2 cut(s)	1182, 1630
HphI	GGTGA	5 cut(s)	368, 970, 1178, 1408, 1910
Hpy166II	GTNNAC	3 cut(s)	376, 478, 500
Hpy188I	TCNGA	7 cut(s)	147, 208, 516, 604, 935, 945, 1948
Hpy8I	GTNNAC	3 cut(s)	376, 478, 500
Hpy99I	CGWCG	1 cut(s)	372
HpyAV	CCTTC	8 cut(s)	94, 127, 642, 1280, 1472, 1513, 1690, 1700
HpyCH4III	ACNGT	6 cut(s)	291, 787, 868, 1005, 1215, 1879
HpyCH4IV	ACGT	3 cut(s)	442, 841, 1515
HpyCH4V	TGCA	9 cut(s)	13, 39, 65, 701, 1067, 1211, 1273, 1309, 1703
HpySE526I	ACGT	3 cut(s)	442, 841, 1515
Hsp92I	GRCGYC	1 cut(s)	112
HspAI	GCGC	2 cut(s)	1358, 1446
KpnI	GGTACC	1 cut(s)	224
Ksp22I	TGATCA	1 cut(s)	1408
Kzo9I	GATC	8 cut(s)	187, 247, 583, 599, 834, 1055, 1408, 1561
LmnI	GCTCC	5 cut(s)	456, 652, 1222, 1402, 1795
Lsp1109I	GCAGC	4 cut(s)	1420, 1534, 1543, 1852
LweI	GCATC	4 cut(s)	14, 91, 1186, 1498
MaeI	CTAG	5 cut(s)	417, 494, 1451, 1565, 1658
MaeII	ACGT	3 cut(s)	442, 841, 1515
MaeIII	GTNAC	2 cut(s)	842, 1474
MalI	GATC	8 cut(s)	189, 249, 585, 601, 836, 1057, 1410, 1563
MboI	GATC	8 cut(s)	187, 247, 583, 599, 834, 1055, 1408, 1561
MboII	GAAGA	5 cut(s)	48, 266, 347, 749, 1774
MfeI	CAATTG	1 cut(s)	243
MflI	RGATCY	3 cut(s)	599, 834, 1055
MhlI	GDGCHC	5 cut(s)	308, 354, 453, 1113, 1227
MluCI	AATT	8 cut(s)	202, 243, 537, 624, 1038, 1096, 1902, 1914
MroXI	GAANNNNTTC	1 cut(s)	327
MseI	TTAA	7 cut(s)	129, 179, 435, 696, 918, 1229, 1607
MslI	CAYNNNNRTG	6 cut(s)	515, 788, 816, 1116, 1581, 1803
MspA1I	CMGCKG	1 cut(s)	1339
MspI	CCGG	2 cut(s)	1182, 1630
MspR9I	CCNGG	3 cut(s)	1182, 1293, 1401
MunI	CAATTG	1 cut(s)	243
MvaI	CCWGG	2 cut(s)	1293, 1401
MvnI	CGCG	1 cut(s)	1220
NciI	CCSGG	1 cut(s)	1182
NdeII	GATC	8 cut(s)	187, 247, 583, 599, 834, 1055, 1408, 1561
NlaIV	GGNNCC	6 cut(s)	222, 452, 836, 1057, 1186, 1711
NspI	RCATGY	2 cut(s)	1301, 1586
NspV	TTCGAA	1 cut(s)	285
PaeR7I	CTCGAG	1 cut(s)	1047
PagI	TCATGA	1 cut(s)	331
PciI	ACATGT	1 cut(s)	1297
PdmI	GAANNNNTTC	1 cut(s)	327
PfeI	GAWTC	2 cut(s)	903, 1315
PflMI	CCANNNNNTGG	1 cut(s)	446
PfoI	TCCNGGA	1 cut(s)	1399
PkrI	GCNGC	4 cut(s)	1435, 1549, 1558, 1867
PmaCI	CACGTG	1 cut(s)	443
PmlI	CACGTG	1 cut(s)	443
Ppu21I	YACGTR	2 cut(s)	443, 842
PpuMI	RGGWCCY	2 cut(s)	164, 1289
PscI	ACATGT	1 cut(s)	1297
PsiI	TTATAA	1 cut(s)	750
Psp124BI	GAGCTC	1 cut(s)	1227
Psp5II	RGGWCCY	2 cut(s)	164, 1289
Psp6I	CCWGG	2 cut(s)	1291, 1399
PspCI	CACGTG	1 cut(s)	443
PspFI	CCCAGC	1 cut(s)	989
PspGI	CCWGG	2 cut(s)	1291, 1399
PspN4I	GGNNCC	6 cut(s)	222, 452, 836, 1057, 1186, 1711
PspPI	GGNCC	9 cut(s)	164, 422, 754, 793, 1289, 1376, 1639, 1720, 1742
PspPPI	RGGWCCY	2 cut(s)	164, 1289
PstI	CTGCAG	1 cut(s)	1705
PsuI	RGATCY	3 cut(s)	599, 834, 1055
PvuII	CAGCTG	1 cut(s)	1339
RsaI	GTAC	7 cut(s)	79, 222, 499, 521, 855, 870, 1007
RsaNI	GTAC	7 cut(s)	78, 221, 498, 520, 854, 869, 1006
RseI	CAYNNNNRTG	6 cut(s)	515, 788, 816, 1116, 1581, 1803
SacI	GAGCTC	1 cut(s)	1227
SaqAI	TTAA	7 cut(s)	129, 179, 435, 696, 918, 1229, 1607
SatI	GCNGC	4 cut(s)	1434, 1548, 1557, 1866
Sau3AI	GATC	8 cut(s)	187, 247, 583, 599, 834, 1055, 1408, 1561
Sau96I	GGNCC	9 cut(s)	164, 422, 754, 793, 1289, 1376, 1639, 1720, 1742
ScaI	AGTACT	1 cut(s)	79
ScrFI	CCNGG	3 cut(s)	1182, 1293, 1401
SduI	GDGCHC	5 cut(s)	308, 354, 453, 1113, 1227
SfaNI	GCATC	4 cut(s)	14, 91, 1186, 1498
SfcI	CTRYAG	2 cut(s)	801, 1701
Sfr274I	CTCGAG	1 cut(s)	1047
SfuI	TTCGAA	1 cut(s)	285
SinI	GGWCC	7 cut(s)	164, 422, 754, 793, 1289, 1376, 1639
SlaI	CTCGAG	1 cut(s)	1047
SmiMI	CAYNNNNRTG	6 cut(s)	515, 788, 816, 1116, 1581, 1803
SmlI	CTYRAG	4 cut(s)	656, 1047, 1174, 1587
SmoI	CTYRAG	4 cut(s)	656, 1047, 1174, 1587
SnaBI	TACGTA	1 cut(s)	842
SpeI	ACTAGT	1 cut(s)	416
Sse9I	AATT	8 cut(s)	202, 243, 537, 624, 1038, 1096, 1902, 1914
SsiI	CCGC	3 cut(s)	425, 1220, 1249
SspI	AATATT	1 cut(s)	1441
SspMI	CTAG	5 cut(s)	417, 494, 1451, 1565, 1658
SstI	GAGCTC	1 cut(s)	1227
StyD4I	CCNGG	3 cut(s)	1180, 1291, 1399
StyI	CCWWGG	2 cut(s)	216, 1713
TaaI	ACNGT	6 cut(s)	291, 787, 868, 1005, 1215, 1879
TaiI	ACGT	3 cut(s)	445, 844, 1518
TaqI	TCGA	4 cut(s)	285, 367, 735, 1048
TaqII	GACCGA	1 cut(s)	1364
TasI	AATT	8 cut(s)	202, 243, 537, 624, 1038, 1096, 1902, 1914
TatI	WGTACW	2 cut(s)	77, 519
TfiI	GAWTC	2 cut(s)	903, 1315
Tru1I	TTAA	7 cut(s)	129, 179, 435, 696, 918, 1229, 1607
Tru9I	TTAA	7 cut(s)	129, 179, 435, 696, 918, 1229, 1607
TscAI	CASTG	6 cut(s)	296, 550, 790, 1118, 1462, 1888
TseI	GCWGC	4 cut(s)	1433, 1547, 1556, 1865
TspDTI	ATGAA	9 cut(s)	320, 348, 405, 1052, 1295, 1299, 1368, 1704, 1775
TspRI	CASTG	6 cut(s)	296, 550, 790, 1118, 1462, 1888
Van91I	CCANNNNNTGG	1 cut(s)	446
VpaK11BI	GGWCC	7 cut(s)	164, 422, 754, 793, 1289, 1376, 1639
XagI	CCTNNNNNAGG	2 cut(s)	1704, 1948
XapI	RAATTY	2 cut(s)	1096, 1914
XbaI	TCTAGA	1 cut(s)	1657
XceI	RCATGY	2 cut(s)	1301, 1586
XhoI	CTCGAG	1 cut(s)	1047
XmnI	GAANNNNTTC	1 cut(s)	327
XspI	CTAG	5 cut(s)	417, 494, 1451, 1565, 1658
ZrmI	AGTACT	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.