Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002488

Physical Location & Seq

Genomic Coordinates Forward (+)

74641207 .. 74642013

Gene Structure 807 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34411

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGTTGTATTGTGCCACCCGCGAGAAGCTGGATCCAGAGTTTGTGAGATCAGAAGTGGCTCGTGGGAGGGCAATTATCCCTTCCAATAAGAAGCACTTGGAGCTGGAGCCAATGATCGTTGGGAGAAAGTTTCTGGTCAAAGTTAATGCAAACATAGGAAACTCTGCTGTTGCCAGCTCTATTGAAGAGGAAGTTTATAAGGTCCAGTGGGCAGCTATGTGGGGTGCTGACACTGTTATGGACCTCTCTACAGGTCGCCATATCCATGAGACCCGTGAGTGGATCCTACGTAACTCTGCTGTACCAGTAGGGACTGTACCCATCTATCAAGCACTTGAAAAGGTGGATGGAATTGCAGAAAATCTTAACTGGGAAGTGTTCAGACAAACTCTGATTGAACAAGCTAAGCAGGGTGTAGATTACTTCACCATCCATGCTGGGGTTCTACTACGGTACATCCCACTAACAGCAAAGCGTATGACAGGAATTGTCTCTCGAGGAGGATCCATTCATGCAAAGTGGTGCTTAGCTAATCATAAAGAGAATTTTGCTTATGAGCACTGGGATGACATACTTGACATCTGTAATCAATATGATGTTGCCCTGTCAATAGCTGATGGCTTGAGACCGGGTTCGATTTATGATGCCAATGATACTGCACAGTTTGCCGAGCTATTAACTCAGGGAGAACTGACCCGCAGGGCATGGGAAAAGGATGTACAGGTAATGAATGAAGGACCTGGACATGTTCCAATGCACAAGATTCCTGAGAACAGGGCAAAACAGCTGGACTGGTGTAATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006766 GO:0006767 GO:0006772 GO:0006790 GO:0006807 GO:0007584 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009228 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010266 GO:0014070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017144 GO:0018130 GO:0019144 GO:0019438 GO:0019904 GO:0031667 GO:0033273 GO:0034641 GO:0042221 GO:0042364 GO:0042493 GO:0042723 GO:0042724 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048037 GO:0050896 GO:0051536 GO:0051540 GO:0071704 GO:0072527 GO:0072528 GO:0080041 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko00730 ko01100 map00730 map01100

Pfam Domains

Protein Families

ThiC-associated ThiC_Rad_SAM

Protein Analysis

268

Amino Acids

30.32

Weight (kDa)

6.0

Isoelectric Point (pI)

34.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ThiC_Rad_SAM	PF01964	1 - 267	7.9e-108	Radical SAM ThiC family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29630 AT2G29630 AT2G29630 AT2G29630
fragaria_vesca	FvH4_3g38200 FvH4_3g38200 FvH4_3g38200 FvH4_3g38200
malus_domestica	MD03G1074000.v1.1 MD11G1080300.v1.1
prunus_persica	Prupe.6G060700_v2.0.a1 Prupe.6G060700_v2.0.a1 Prupe.6G060700_v2.0.a1 Prupe.6G060700_v2.0.a1 Prupe.6G060700_v2.0.a1 Prupe.6G060700_v2.0.a1 Prupe.6G060700_v2.0.a1 Prupe.6G060700_v2.0.a1 Prupe.6G060700_v2.0.a1 Prupe.6G060700_v2.0.a1 Prupe.6G060700_v2.0.a1
pyrus_communis	pycom03g05980 pycom11g06760
rosa_chinensis	RchiOBHm_Chr5g0068641 RchiOBHm_Chr5g0068681
rosa_laevigata	RLG00000035986 RLG00000035996
rosa_multiflora	Rmu_sc0000376.1_g000006
rosa_roxburghii	Rroxscaffold_1G00012160 Rroxscaffold_1G00012240
rosa_rugosa	Rorug05G0392100 Rorug05G0392200 Rorug05G0392200 Rorug05G0392200 Rorug05G0392200 Rorug05G0392200
rosa_samantha	Rh5AG449800 Rh5BG468000 Rh5CG489900 Rh5DG481300
rosa_wichuraiana	Rw5G041990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	198
AccII	CGCG	1 cut(s)	21
AciI	CCGC	2 cut(s)	19, 697
AclWI	GGATC	6 cut(s)	26, 39, 277, 290, 498, 511
AcsI	RAATTY	1 cut(s)	544
AfaI	GTAC	4 cut(s)	303, 318, 455, 720
AfiI	CCNNNNNNNGG	2 cut(s)	279, 439
AflIII	ACRYGT	1 cut(s)	745
AgsI	TTSAA	3 cut(s)	185, 338, 398
AjnI	CCWGG	1 cut(s)	739
AluBI	AGCT	9 cut(s)	28, 103, 177, 215, 404, 530, 614, 673, 787
AluI	AGCT	9 cut(s)	28, 103, 177, 215, 404, 530, 614, 673, 787
Alw21I	GWGCWC	1 cut(s)	561
Alw26I	GTCTC	3 cut(s)	263, 496, 619
AlwI	GGATC	6 cut(s)	26, 39, 277, 290, 498, 511
Ama87I	CYCGRG	1 cut(s)	495
ApeKI	GCWGC	1 cut(s)	212
ApoI	RAATTY	1 cut(s)	544
AspS9I	GGNCC	3 cut(s)	202, 241, 737
AsuC2I	CCSGG	1 cut(s)	630
AsuHPI	GGTGA	1 cut(s)	418
AvaI	CYCGRG	1 cut(s)	495
AvaII	GGWCC	3 cut(s)	202, 241, 737
BamHI	GGATCC	3 cut(s)	31, 282, 503
BauI	CACGAG	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	561
BbvI	GCAGC	1 cut(s)	224
BccI	CCATC	4 cut(s)	329, 341, 437, 611
BciT130I	CCWGG	1 cut(s)	741
BcnI	CCSGG	1 cut(s)	630
BcoDI	GTCTC	3 cut(s)	263, 496, 619
BfmI	CTRYAG	1 cut(s)	249
BisI	GCNGC	1 cut(s)	213
BlpI	GCTNAGC	2 cut(s)	405, 526
BlsI	GCNGC	1 cut(s)	214
Bme1390I	CCNGG	2 cut(s)	630, 741
Bme18I	GGWCC	3 cut(s)	202, 241, 737
BmeT110I	CYCGRG	1 cut(s)	495
BmgT120I	GGNCC	3 cut(s)	202, 241, 737
BmiI	GGNNCC	4 cut(s)	33, 108, 284, 505
BmrFI	CCNGG	2 cut(s)	630, 741
BmrI	ACTGGG	2 cut(s)	379, 571
BmsI	GCATC	1 cut(s)	634
BmuI	ACTGGG	2 cut(s)	379, 571
BpmI	CTGGAG	1 cut(s)	125
Bpu1102I	GCTNAGC	2 cut(s)	405, 526
BpuEI	CTTGAG	1 cut(s)	643
BpuMI	CCSGG	1 cut(s)	630
BsaAI	YACGTR	1 cut(s)	290
BsaI	GGTCTC	2 cut(s)	263, 619
Bsc4I	CCNNNNNNNGG	2 cut(s)	279, 439
Bse1I	ACTGG	5 cut(s)	205, 305, 374, 566, 797
BseBI	CCWGG	1 cut(s)	741
BseGI	GGATG	5 cut(s)	352, 429, 456, 571, 721
BseLI	CCNNNNNNNGG	2 cut(s)	279, 439
BseMII	CTCAG	2 cut(s)	695, 759
BseNI	ACTGG	5 cut(s)	205, 305, 374, 566, 797
BseRI	GAGGAG	1 cut(s)	513
BseXI	GCAGC	1 cut(s)	224
BseYI	CCCAGC	1 cut(s)	437
BsgI	GTGCAG	1 cut(s)	642
Bsh1236I	CGCG	1 cut(s)	21
BsiHKAI	GWGCWC	1 cut(s)	561
BsiHKCI	CYCGRG	1 cut(s)	495
BsiSI	CCGG	1 cut(s)	629
BslFI	GGGAC	1 cut(s)	325
BslI	CCNNNNNNNGG	2 cut(s)	279, 439
BsmAI	GTCTC	3 cut(s)	263, 496, 619
BsmFI	GGGAC	1 cut(s)	325
Bso31I	GGTCTC	2 cut(s)	263, 619
BsoBI	CYCGRG	1 cut(s)	495
Bsp1286I	GDGCHC	1 cut(s)	561
Bsp1407I	TGTACA	1 cut(s)	718
Bsp143I	GATC	5 cut(s)	31, 47, 114, 282, 503
Bsp1720I	GCTNAGC	2 cut(s)	405, 526
BspACI	CCGC	2 cut(s)	19, 697
BspCNI	CTCAG	2 cut(s)	694, 760
BspFNI	CGCG	1 cut(s)	21
BspLI	GGNNCC	4 cut(s)	33, 108, 284, 505
BspPI	GGATC	6 cut(s)	26, 39, 277, 290, 498, 511
BspTNI	GGTCTC	2 cut(s)	263, 619
BsrGI	TGTACA	1 cut(s)	718
BsrI	ACTGG	5 cut(s)	205, 305, 374, 566, 797
BssMI	GATC	5 cut(s)	31, 47, 114, 282, 503
BssSI	CACGAG	1 cut(s)	60
Bst2BI	CACGAG	1 cut(s)	60
Bst2UI	CCWGG	1 cut(s)	741
Bst4CI	ACNGT	4 cut(s)	235, 316, 453, 663
Bst6I	CTCTTC	1 cut(s)	180
BstAPI	GCANNNNNTGC	1 cut(s)	665
BstAUI	TGTACA	1 cut(s)	718
BstBAI	YACGTR	1 cut(s)	290
BstC8I	GCNNGC	1 cut(s)	175
BstDEI	CTNAG	4 cut(s)	405, 526, 681, 768
BstF5I	GGATG	5 cut(s)	352, 429, 456, 571, 721
BstFNI	CGCG	1 cut(s)	21
BstKTI	GATC	5 cut(s)	34, 50, 117, 285, 506
BstMAI	GTCTC	3 cut(s)	263, 496, 619
BstMBI	GATC	5 cut(s)	31, 47, 114, 282, 503
BstMWI	GCNNNNNNNGC	2 cut(s)	100, 665
BstNI	CCWGG	1 cut(s)	741
BstNSI	RCATGY	1 cut(s)	749
BstSCI	CCNGG	2 cut(s)	628, 739
BstSFI	CTRYAG	1 cut(s)	249
BstSNI	TACGTA	1 cut(s)	290
BstUI	CGCG	1 cut(s)	21
BstV1I	GCAGC	1 cut(s)	224
BstX2I	RGATCY	3 cut(s)	31, 282, 503
BstYI	RGATCY	3 cut(s)	31, 282, 503
BtsCI	GGATG	5 cut(s)	352, 429, 456, 571, 721
BtsIMutI	CAGTG	3 cut(s)	212, 231, 559
Cac8I	GCNNGC	1 cut(s)	175
Cfr13I	GGNCC	3 cut(s)	202, 241, 737
Csp6I	GTAC	4 cut(s)	302, 317, 454, 719
CviAII	CATG	6 cut(s)	266, 434, 512, 705, 746, 804
CviQI	GTAC	4 cut(s)	302, 317, 454, 719
DdeI	CTNAG	4 cut(s)	405, 526, 681, 768
DpnI	GATC	5 cut(s)	33, 49, 116, 284, 505
DpnII	GATC	5 cut(s)	31, 47, 114, 282, 503
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Eco105I	TACGTA	1 cut(s)	290
Eco31I	GGTCTC	2 cut(s)	263, 619
Eco47I	GGWCC	3 cut(s)	202, 241, 737
Eco88I	CYCGRG	1 cut(s)	495
EcoO109I	RGGNCCY	1 cut(s)	737
EcoRII	CCWGG	1 cut(s)	739
EcoT22I	ATGCAT	1 cut(s)	805
FaeI	CATG	6 cut(s)	269, 437, 515, 708, 749, 807
FalI	AAGNNNNNCTT	4 cut(s)	80, 112, 509, 541
FaqI	GGGAC	1 cut(s)	325
FatI	CATG	6 cut(s)	265, 433, 511, 704, 745, 803
FauI	CCCGC	2 cut(s)	26, 704
Fnu4HI	GCNGC	1 cut(s)	213
FokI	GGATG	5 cut(s)	359, 416, 443, 578, 728
Fsp4HI	GCNGC	1 cut(s)	213
GluI	GCNGC	1 cut(s)	213
GsaI	CCCAGC	1 cut(s)	441
GsuI	CTGGAG	1 cut(s)	125
HapII	CCGG	1 cut(s)	629
Hin1II	CATG	6 cut(s)	269, 437, 515, 708, 749, 807
HinfI	GANTC	1 cut(s)	763
HpaII	CCGG	1 cut(s)	629
HphI	GGTGA	1 cut(s)	418
Hpy188I	TCNGA	3 cut(s)	52, 383, 393
Hpy188III	TCNNGA	3 cut(s)	35, 495, 767
HpyAV	CCTTC	2 cut(s)	90, 728
HpyCH4III	ACNGT	4 cut(s)	235, 316, 453, 663
HpyCH4IV	ACGT	1 cut(s)	289
HpyCH4V	TGCA	6 cut(s)	149, 356, 515, 659, 757, 803
HpyF10VI	GCNNNNNNNGC	2 cut(s)	100, 665
HpyF3I	CTNAG	4 cut(s)	405, 526, 681, 768
HpySE526I	ACGT	1 cut(s)	289
Hsp92II	CATG	6 cut(s)	269, 437, 515, 708, 749, 807
Kzo9I	GATC	5 cut(s)	31, 47, 114, 282, 503
LmnI	GCTCC	2 cut(s)	100, 106
Lsp1109I	GCAGC	1 cut(s)	224
LweI	GCATC	1 cut(s)	634
MaeII	ACGT	1 cut(s)	289
MaeIII	GTNAC	1 cut(s)	290
MalI	GATC	5 cut(s)	33, 49, 116, 284, 505
MboI	GATC	5 cut(s)	31, 47, 114, 282, 503
MboII	GAAGA	1 cut(s)	197
MflI	RGATCY	3 cut(s)	31, 282, 503
MhlI	GDGCHC	1 cut(s)	561
MluCI	AATT	4 cut(s)	72, 351, 486, 544
MnlI	CCTC	5 cut(s)	60, 181, 254, 491, 494
Mph1103I	ATGCAT	1 cut(s)	805
MseI	TTAA	3 cut(s)	144, 366, 677
MslI	CAYNNNNRTG	3 cut(s)	236, 264, 564
MspA1I	CMGCKG	1 cut(s)	787
MspI	CCGG	1 cut(s)	629
MspR9I	CCNGG	2 cut(s)	630, 741
MvaI	CCWGG	1 cut(s)	741
MvnI	CGCG	1 cut(s)	21
MwoI	GCNNNNNNNGC	2 cut(s)	100, 665
NciI	CCSGG	1 cut(s)	630
NdeII	GATC	5 cut(s)	31, 47, 114, 282, 503
NlaIII	CATG	6 cut(s)	269, 437, 515, 708, 749, 807
NlaIV	GGNNCC	4 cut(s)	33, 108, 284, 505
NmeAIII	GCCGAG	1 cut(s)	694
NsiI	ATGCAT	1 cut(s)	805
NspI	RCATGY	1 cut(s)	749
PaeR7I	CTCGAG	1 cut(s)	495
PciI	ACATGT	1 cut(s)	745
PfeI	GAWTC	1 cut(s)	763
PkrI	GCNGC	1 cut(s)	214
Ppu21I	YACGTR	1 cut(s)	290
PpuMI	RGGWCCY	1 cut(s)	737
PscI	ACATGT	1 cut(s)	745
PsiI	TTATAA	1 cut(s)	198
Psp5II	RGGWCCY	1 cut(s)	737
Psp6I	CCWGG	1 cut(s)	739
PspFI	CCCAGC	1 cut(s)	437
PspGI	CCWGG	1 cut(s)	739
PspN4I	GGNNCC	4 cut(s)	33, 108, 284, 505
PspPI	GGNCC	3 cut(s)	202, 241, 737
PspPPI	RGGWCCY	1 cut(s)	737
PsuI	RGATCY	3 cut(s)	31, 282, 503
PvuII	CAGCTG	1 cut(s)	787
RsaI	GTAC	4 cut(s)	303, 318, 455, 720
RsaNI	GTAC	4 cut(s)	302, 317, 454, 719
RseI	CAYNNNNRTG	3 cut(s)	236, 264, 564
SaqAI	TTAA	3 cut(s)	144, 366, 677
SatI	GCNGC	1 cut(s)	213
Sau3AI	GATC	5 cut(s)	31, 47, 114, 282, 503
Sau96I	GGNCC	3 cut(s)	202, 241, 737
ScrFI	CCNGG	2 cut(s)	630, 741
SduI	GDGCHC	1 cut(s)	561
SfaNI	GCATC	1 cut(s)	634
SfcI	CTRYAG	1 cut(s)	249
Sfr274I	CTCGAG	1 cut(s)	495
SinI	GGWCC	3 cut(s)	202, 241, 737
SlaI	CTCGAG	1 cut(s)	495
SmiMI	CAYNNNNRTG	3 cut(s)	236, 264, 564
SmlI	CTYRAG	2 cut(s)	495, 622
SmoI	CTYRAG	2 cut(s)	495, 622
SnaBI	TACGTA	1 cut(s)	290
Sse9I	AATT	4 cut(s)	72, 351, 486, 544
SsiI	CCGC	2 cut(s)	19, 697
StyD4I	CCNGG	2 cut(s)	628, 739
TaaI	ACNGT	4 cut(s)	235, 316, 453, 663
TaiI	ACGT	1 cut(s)	292
TaqI	TCGA	2 cut(s)	496, 635
TasI	AATT	4 cut(s)	72, 351, 486, 544
TatI	WGTACW	1 cut(s)	718
TfiI	GAWTC	1 cut(s)	763
Tru1I	TTAA	3 cut(s)	144, 366, 677
Tru9I	TTAA	3 cut(s)	144, 366, 677
TscAI	CASTG	3 cut(s)	212, 238, 566
TseI	GCWGC	1 cut(s)	212
TspDTI	ATGAA	3 cut(s)	500, 743, 747
TspRI	CASTG	3 cut(s)	212, 238, 566
VpaK11BI	GGWCC	3 cut(s)	202, 241, 737
XapI	RAATTY	1 cut(s)	544
XceI	RCATGY	1 cut(s)	749
XhoI	CTCGAG	1 cut(s)	495
Zsp2I	ATGCAT	1 cut(s)	805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.