Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002488

Physical Location & Seq

Genomic Coordinates Forward (+)

74672577 .. 74673524

Gene Structure 948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035996

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGCTCCAATTCTTTGTTGGTCTTAGAGATGGCATCGGTGCATGGCGTCTTTCACGCCCATTTAAGGAGATATGTCTGAGTTCCATCAGCTCAGGTCCTAAGGCCACTGTAACTTTTGATCCTCCAGCAACCAATTCAGAGAAAGCCAAGGTACTCAACTTACCGAGGCATACAATTGATCCTGCTTCTCCTGATTTCCTGCCTCTTCCATCCTTCGAACAGTGTTTTCCAAAGAGCACAAAAGAACAAAGGGAAATTATTCATGAAGAAACTGGTCATGTGCTCAAAGTTCCCTTTCGACGAGTTCACCTGTCTGGAGATGAACCAGCCTTTGATAACTATGACACCATGAGTGGTCCGCAAAACATTAATCCACGTGTTGGGCTCCCTCAACCAAGGAAAGATACAGGGCTCCCTCAACTAAGGAAAGATTTGGTTGACAGGCGAGAGAAATTAGGTACACCGAGATACACTCAGATGTACTATGCTAAGCAGGGAATTATCACTGAGGAAATGTTGTATTGTGCTACCCGCGAGAAGCTTGATCCAGAGTTAGTGAGATCAGAAGTGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006766 GO:0006767 GO:0006772 GO:0006790 GO:0006807 GO:0007584 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009228 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010266 GO:0014070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017144 GO:0018130 GO:0019144 GO:0019438 GO:0019904 GO:0031667 GO:0033273 GO:0034641 GO:0042221 GO:0042364 GO:0042493 GO:0042723 GO:0042724 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048037 GO:0050896 GO:0051536 GO:0051540 GO:0071704 GO:0072527 GO:0072528 GO:0080041 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko00730 ko01100 map00730 map01100

Pfam Domains

Protein Families

ThiC-associated ThiC_Rad_SAM

Protein Analysis

192

Amino Acids

21.69

Weight (kDa)

8.41

Isoelectric Point (pI)

58.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29630 AT2G29630 AT2G29630 AT2G29630
fragaria_vesca	FvH4_3g38200 FvH4_3g38200 FvH4_3g38200 FvH4_3g38200
malus_domestica	MD03G1074000.v1.1 MD11G1080300.v1.1
prunus_persica	Prupe.6G060700_v2.0.a1 Prupe.6G060700_v2.0.a1 Prupe.6G060700_v2.0.a1 Prupe.6G060700_v2.0.a1 Prupe.6G060700_v2.0.a1 Prupe.6G060700_v2.0.a1 Prupe.6G060700_v2.0.a1 Prupe.6G060700_v2.0.a1 Prupe.6G060700_v2.0.a1 Prupe.6G060700_v2.0.a1 Prupe.6G060700_v2.0.a1
pyrus_communis	pycom03g05980 pycom11g06760
rosa_chinensis	RchiOBHm_Chr5g0068641 RchiOBHm_Chr5g0068681
rosa_laevigata	RLG00000035986 RLG00000035996
rosa_multiflora	Rmu_sc0000376.1_g000006
rosa_roxburghii	Rroxscaffold_1G00012160 Rroxscaffold_1G00012240
rosa_rugosa	Rorug05G0392100 Rorug05G0392200 Rorug05G0392200 Rorug05G0392200 Rorug05G0392200 Rorug05G0392200
rosa_samantha	Rh5AG449800 Rh5BG468000 Rh5CG489900 Rh5DG481300
rosa_wichuraiana	Rw5G041990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	380
AccII	CGCG	1 cut(s)	534
AciI	CCGC	2 cut(s)	359, 532
AclWI	GGATC	3 cut(s)	113, 173, 539
AcvI	CACGTG	1 cut(s)	377
AcyI	GRCGYC	1 cut(s)	46
AfaI	GTAC	3 cut(s)	153, 460, 482
AfiI	CCNNNNNNNGG	2 cut(s)	64, 380
AflIII	ACRYGT	1 cut(s)	376
AluBI	AGCT	2 cut(s)	90, 541
AluI	AGCT	2 cut(s)	90, 541
Alw21I	GWGCWC	2 cut(s)	239, 285
AlwI	GGATC	3 cut(s)	113, 173, 539
AoxI	GGCC	1 cut(s)	102
AseI	ATTAAT	1 cut(s)	369
Asp700I	GAANNNNTTC	1 cut(s)	258
AspS9I	GGNCC	2 cut(s)	95, 356
AsuHPI	GGTGA	1 cut(s)	299
AsuII	TTCGAA	1 cut(s)	216
AvaII	GGWCC	2 cut(s)	95, 356
AxyI	CCTNAGG	1 cut(s)	99
BanII	GRGCYC	2 cut(s)	387, 414
BbrPI	CACGTG	1 cut(s)	377
Bbv12I	GWGCWC	2 cut(s)	239, 285
BccI	CCATC	3 cut(s)	23, 92, 217
BlpI	GCTNAGC	1 cut(s)	489
Bme18I	GGWCC	2 cut(s)	95, 356
BmgT120I	GGNCC	2 cut(s)	95, 356
BmiI	GGNNCC	2 cut(s)	386, 413
BmsI	GCATC	1 cut(s)	42
BplI	GAGNNNNNCTC	2 cut(s)	457, 489
BpmI	CTGGAG	2 cut(s)	108, 336
Bpu10I	CCTNAGC	1 cut(s)	91
Bpu1102I	GCTNAGC	1 cut(s)	489
Bpu14I	TTCGAA	1 cut(s)	216
BsaAI	YACGTR	1 cut(s)	377
BsaHI	GRCGYC	1 cut(s)	46
BsaJI	CCNNGG	3 cut(s)	147, 164, 395
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 380
Bse1I	ACTGG	1 cut(s)	277
Bse21I	CCTNAGG	1 cut(s)	99
BseDI	CCNNGG	3 cut(s)	147, 164, 395
BseGI	GGATG	1 cut(s)	209
BseLI	CCNNNNNNNGG	2 cut(s)	64, 380
BseMII	CTCAG	4 cut(s)	68, 105, 488, 498
BseNI	ACTGG	1 cut(s)	277
Bsh1236I	CGCG	1 cut(s)	534
BshFI	GGCC	1 cut(s)	104
BsiHKAI	GWGCWC	2 cut(s)	239, 285
BslI	CCNNNNNNNGG	2 cut(s)	64, 380
BsnI	GGCC	1 cut(s)	104
Bsp119I	TTCGAA	1 cut(s)	216
Bsp1286I	GDGCHC	4 cut(s)	239, 285, 387, 414
Bsp143I	GATC	4 cut(s)	118, 178, 544, 560
Bsp1720I	GCTNAGC	1 cut(s)	489
BspACI	CCGC	2 cut(s)	359, 532
BspANI	GGCC	1 cut(s)	104
BspCNI	CTCAG	4 cut(s)	69, 104, 487, 499
BspFNI	CGCG	1 cut(s)	534
BspHI	TCATGA	1 cut(s)	262
BspLI	GGNNCC	2 cut(s)	386, 413
BspPI	GGATC	3 cut(s)	113, 173, 539
BspT104I	TTCGAA	1 cut(s)	216
BsrI	ACTGG	1 cut(s)	277
BssECI	CCNNGG	3 cut(s)	147, 164, 395
BssMI	GATC	4 cut(s)	118, 178, 544, 560
BssNI	GRCGYC	1 cut(s)	46
BssT1I	CCWWGG	2 cut(s)	147, 395
Bst4CI	ACNGT	2 cut(s)	109, 222
Bst6I	CTCTTC	1 cut(s)	210
BstACI	GRCGYC	1 cut(s)	46
BstBAI	YACGTR	1 cut(s)	377
BstBI	TTCGAA	1 cut(s)	216
BstDEI	CTNAG	8 cut(s)	23, 77, 91, 99, 422, 474, 489, 507
BstF5I	GGATG	1 cut(s)	209
BstFNI	CGCG	1 cut(s)	534
BstKTI	GATC	4 cut(s)	121, 181, 547, 563
BstMBI	GATC	4 cut(s)	118, 178, 544, 560
BstUI	CGCG	1 cut(s)	534
Bsu36I	CCTNAGG	1 cut(s)	99
BsuRI	GGCC	1 cut(s)	104
BtsCI	GGATG	1 cut(s)	209
BtsIMutI	CAGTG	3 cut(s)	105, 227, 504
CciI	TCATGA	1 cut(s)	262
Cfr13I	GGNCC	2 cut(s)	95, 356
CseI	GACGC	1 cut(s)	35
Csp6I	GTAC	3 cut(s)	152, 459, 481
CviAII	CATG	4 cut(s)	42, 263, 278, 349
CviJI	RGCY	8 cut(s)	90, 104, 146, 329, 385, 412, 541, 572
CviKI_1	RGCY	8 cut(s)	90, 104, 146, 329, 385, 412, 541, 572
CviQI	GTAC	3 cut(s)	152, 459, 481
DdeI	CTNAG	8 cut(s)	23, 77, 91, 99, 422, 474, 489, 507
DpnI	GATC	4 cut(s)	120, 180, 546, 562
DpnII	GATC	4 cut(s)	118, 178, 544, 560
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
Eco130I	CCWWGG	2 cut(s)	147, 395
Eco24I	GRGCYC	2 cut(s)	387, 414
Eco47I	GGWCC	2 cut(s)	95, 356
Eco72I	CACGTG	1 cut(s)	377
Eco81I	CCTNAGG	1 cut(s)	99
EcoO109I	RGGNCCY	1 cut(s)	95
EcoT14I	CCWWGG	2 cut(s)	147, 395
EcoT38I	GRGCYC	2 cut(s)	387, 414
ErhI	CCWWGG	2 cut(s)	147, 395
FaeI	CATG	4 cut(s)	45, 266, 281, 352
FaiI	YATR	8 cut(s)	43, 73, 171, 264, 279, 342, 350, 486
FatI	CATG	4 cut(s)	41, 262, 277, 348
FauI	CCCGC	1 cut(s)	539
FokI	GGATG	1 cut(s)	196
FriOI	GRGCYC	2 cut(s)	387, 414
GsuI	CTGGAG	2 cut(s)	108, 336
HaeIII	GGCC	1 cut(s)	104
HgaI	GACGC	1 cut(s)	35
Hin1I	GRCGYC	1 cut(s)	46
Hin1II	CATG	4 cut(s)	45, 266, 281, 352
HincII	GTYRAC	1 cut(s)	439
HindII	GTYRAC	1 cut(s)	439
HindIII	AAGCTT	1 cut(s)	539
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	3 cut(s)	307, 439, 461
Hpy188I	TCNGA	4 cut(s)	78, 139, 477, 565
Hpy188III	TCNNGA	4 cut(s)	191, 263, 315, 548
Hpy8I	GTNNAC	3 cut(s)	307, 439, 461
Hpy99I	CGWCG	1 cut(s)	303
HpyAV	CCTTC	1 cut(s)	223
HpyCH4III	ACNGT	2 cut(s)	109, 222
HpyCH4IV	ACGT	1 cut(s)	376
HpyCH4V	TGCA	1 cut(s)	41
HpyF3I	CTNAG	8 cut(s)	23, 77, 91, 99, 422, 474, 489, 507
HpySE526I	ACGT	1 cut(s)	376
Hsp92I	GRCGYC	1 cut(s)	46
Hsp92II	CATG	4 cut(s)	45, 266, 281, 352
Kzo9I	GATC	4 cut(s)	118, 178, 544, 560
LmnI	GCTCC	3 cut(s)	9, 390, 417
LweI	GCATC	1 cut(s)	42
MaeII	ACGT	1 cut(s)	376
MaeIII	GTNAC	1 cut(s)	109
MalI	GATC	4 cut(s)	120, 180, 546, 562
MboI	GATC	4 cut(s)	118, 178, 544, 560
MboII	GAAGA	2 cut(s)	197, 278
MfeI	CAATTG	1 cut(s)	174
MhlI	GDGCHC	4 cut(s)	239, 285, 387, 414
MluCI	AATT	6 cut(s)	8, 133, 174, 255, 452, 498
MnlI	CCTC	6 cut(s)	132, 159, 213, 399, 426, 502
MroXI	GAANNNNTTC	1 cut(s)	258
MseI	TTAA	2 cut(s)	63, 369
MslI	CAYNNNNRTG	1 cut(s)	476
MunI	CAATTG	1 cut(s)	174
MvnI	CGCG	1 cut(s)	534
NdeII	GATC	4 cut(s)	118, 178, 544, 560
NlaIII	CATG	4 cut(s)	45, 266, 281, 352
NlaIV	GGNNCC	2 cut(s)	386, 413
NspV	TTCGAA	1 cut(s)	216
PagI	TCATGA	1 cut(s)	262
PdmI	GAANNNNTTC	1 cut(s)	258
PflMI	CCANNNNNTGG	1 cut(s)	380
PmaCI	CACGTG	1 cut(s)	377
PmlI	CACGTG	1 cut(s)	377
Ppu21I	YACGTR	1 cut(s)	377
PpuMI	RGGWCCY	1 cut(s)	95
PshBI	ATTAAT	1 cut(s)	369
Psp5II	RGGWCCY	1 cut(s)	95
PspCI	CACGTG	1 cut(s)	377
PspN4I	GGNNCC	2 cut(s)	386, 413
PspPI	GGNCC	2 cut(s)	95, 356
PspPPI	RGGWCCY	1 cut(s)	95
RsaI	GTAC	3 cut(s)	153, 460, 482
RsaNI	GTAC	3 cut(s)	152, 459, 481
RseI	CAYNNNNRTG	1 cut(s)	476
SaqAI	TTAA	2 cut(s)	63, 369
Sau3AI	GATC	4 cut(s)	118, 178, 544, 560
Sau96I	GGNCC	2 cut(s)	95, 356
SduI	GDGCHC	4 cut(s)	239, 285, 387, 414
SetI	ASST	7 cut(s)	92, 97, 153, 312, 379, 460, 543
SfaNI	GCATC	1 cut(s)	42
SfuI	TTCGAA	1 cut(s)	216
SinI	GGWCC	2 cut(s)	95, 356
SmiMI	CAYNNNNRTG	1 cut(s)	476
Sse9I	AATT	6 cut(s)	8, 133, 174, 255, 452, 498
SsiI	CCGC	2 cut(s)	359, 532
StyI	CCWWGG	2 cut(s)	147, 395
TaaI	ACNGT	2 cut(s)	109, 222
TaiI	ACGT	1 cut(s)	379
TaqI	TCGA	2 cut(s)	216, 298
TasI	AATT	6 cut(s)	8, 133, 174, 255, 452, 498
TatI	WGTACW	1 cut(s)	480
Tru1I	TTAA	2 cut(s)	63, 369
Tru9I	TTAA	2 cut(s)	63, 369
TscAI	CASTG	3 cut(s)	112, 227, 511
TspDTI	ATGAA	3 cut(s)	251, 279, 336
TspRI	CASTG	3 cut(s)	112, 227, 511
Van91I	CCANNNNNTGG	1 cut(s)	380
VpaK11BI	GGWCC	2 cut(s)	95, 356
VspI	ATTAAT	1 cut(s)	369
XcmI	CCANNNNNNNNNTGG	1 cut(s)	14
XmnI	GAANNNNTTC	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.