Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0010356

Physical Location & Seq

Genomic Coordinates Forward (+)

7868531 .. 7874686

Gene Structure 6156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g09350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGAGTACCATATATATATATATATATATATATATATATATATCGCCTTTTCCATCTAATCTCACAAACAAGGCCCACCTTTGGCAACCCAAACCTACGACATGGCCCAAGCCCAACAGTCTCTCTCTACTCTCTTGTCTCCCCCGCCCTTCAAAACCTCTTCTCACTCCCTCCTCACTCTCTCAGACACAACTCTCTCTCCTTCCTTCTCTCTCACTCCTCTCTCTCTCCTCCGCAATGGAGCCGTGGCTTGACGACTTAGCCGACGACCTCCAAAGCCTGAGCTTCACCTCCACCACAACCACCAACACCAACACCACCAAGCGCAGCACTAGCTCCTGCTCCGAATCCACGCTCCCGCCCTCCGCCTCCTCCTCTGCTCGCCTCCCCGCCTCCGTAATCCCCAAGCCCCGACCCCAATCCTCCTCCTCCGACCCCCTCTGGTCCGCAATATACAAGATCCGATCCGAATCCCCGACCCGGCAACTCTCCCTCTCTGACCTCAAATTCGCAGAGCGCCTCGGCTCCGGCGACATCGGTTCCGTCTACTTAGCCGAGTTGAAGTCCCCCGCTGGGGCCCAGGGGTGCGTATTTGCGGCGAAGGTGATGGACAAGAAGGAGCTGATCAGCCGGAGCAAGGAAGGGCGGGCCAGGACAGAGAAGGAAATACTGGAAATGTTGGAGCACCCGTTTTTGCCCACGCTCTATGCGAGCATCGACGCGCCCAACTGGCTTTTCCTGCTCACCGAGTTCTGCCCCGGCGGCGATCTCCACGTTCTCCGCCAGCGCCAGCCGCTCAAACGCTTCGACGAACATGCCGTCAGGTTCTACGCATCGGAGGTGGTTGTAGCTCTAGAGTACCTCCACATGATGGGAATTGTGTACCGTGATCTGAAGCCGGAAAATGTGTTGGTTCGATCGATGGCCATATCATGCTTACAGATTTTGACCTCTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

320

Amino Acids

35.49

Weight (kDa)

8.87

Isoelectric Point (pI)

59.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	168 - 307	2.4e-15	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	170 - 306	3e-27	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44610
fragaria_vesca	FvH4_3g24290
malus_domestica	MD03G1137900.v1.1 MD11G1160000.v1.1
prunus_persica	Prupe.6G122900_v2.0.a1 Prupe.6G122900_v2.0.a1
pyrus_communis	pycom03g09350 pycom11g13070 pycom11g13080
rosa_chinensis	RchiOBHm_Chr5g0043661
rosa_laevigata	RLG00000034208
rosa_multiflora	Rmu_co8165238.1_g000001 Rmu_sc0009127.1_g000001 Rmu_sc0038880.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037380
rosa_rugosa	Rorug05G0206900
rosa_samantha	Rh5AG291900 Rh5BG299300 Rh5CG328200 Rh5DG308200
rosa_wichuraiana	Rw5G027100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	871
AccBSI	CCGCTC	1 cut(s)	796
AccI	GTMKAC	1 cut(s)	546
AccII	CGCG	1 cut(s)	722
AclWI	GGATC	2 cut(s)	454, 459
AcoI	YGGCCR	1 cut(s)	924
AcsI	RAATTY	1 cut(s)	506
AcuI	CTGAAG	1 cut(s)	914
AfaI	GTAC	3 cut(s)	7, 860, 884
AfiI	CCNNNNNNNGG	6 cut(s)	81, 480, 573, 574, 637, 871
AgsI	TTSAA	2 cut(s)	153, 562
AjnI	CCWGG	2 cut(s)	579, 650
AjuI	GAANNNNNNNTTGG	2 cut(s)	719, 751
AluBI	AGCT	4 cut(s)	285, 336, 622, 851
AluI	AGCT	4 cut(s)	285, 336, 622, 851
Alw21I	GWGCWC	1 cut(s)	687
Alw26I	GTCTC	2 cut(s)	125, 143
AlwI	GGATC	2 cut(s)	454, 459
AoxI	GGCC	5 cut(s)	72, 104, 576, 648, 924
ApaI	GGGCCC	1 cut(s)	580
ApeKI	GCWGC	1 cut(s)	327
ApoI	RAATTY	1 cut(s)	506
ArsI	GACNNNNNNTTYG	4 cut(s)	491, 523, 804, 836
AspLEI	GCGC	4 cut(s)	327, 519, 724, 789
AspS9I	GGNCC	6 cut(s)	73, 105, 444, 576, 577, 648
AsuC2I	CCSGG	2 cut(s)	481, 759
AsuHPI	GGTGA	3 cut(s)	280, 616, 736
AvaII	GGWCC	1 cut(s)	444
BaeGI	GKGCMC	1 cut(s)	580
BalI	TGGCCA	1 cut(s)	926
BanII	GRGCYC	1 cut(s)	580
Bbv12I	GWGCWC	1 cut(s)	687
BbvI	GCAGC	1 cut(s)	339
BccI	CCATC	4 cut(s)	61, 601, 865, 916
BceAI	ACGGC	2 cut(s)	229, 803
BcgI	CGANNNNNNTGC	2 cut(s)	797, 831
BciT130I	CCWGG	2 cut(s)	581, 652
BclI	TGATCA	1 cut(s)	624
BcnI	CCSGG	2 cut(s)	481, 759
BcoDI	GTCTC	2 cut(s)	125, 143
BfaI	CTAG	2 cut(s)	333, 854
BfoI	RGCGCY	2 cut(s)	520, 790
BglI	GCCNNNNNGGC	2 cut(s)	730, 762
BisI	GCNGC	4 cut(s)	328, 597, 763, 794
BlsI	GCNGC	4 cut(s)	329, 598, 764, 795
Bme1390I	CCNGG	4 cut(s)	481, 581, 652, 759
Bme18I	GGWCC	1 cut(s)	444
BmgT120I	GGNCC	6 cut(s)	73, 105, 444, 576, 577, 648
BmiI	GGNNCC	5 cut(s)	243, 526, 541, 577, 578
BmrFI	CCNGG	4 cut(s)	481, 581, 652, 759
BmsI	GCATC	2 cut(s)	723, 842
Bpu10I	CCTNAGC	1 cut(s)	281
BpuMI	CCSGG	2 cut(s)	481, 759
Bsa29I	ATCGAT	1 cut(s)	920
BsaBI	GATNNNNATC	1 cut(s)	469
BsaJI	CCNNGG	5 cut(s)	245, 520, 579, 580, 757
BsaXI	ACNNNNNCTCC	4 cut(s)	183, 213, 674, 704
Bsc4I	CCNNNNNNNGG	6 cut(s)	81, 480, 573, 574, 637, 871
Bse1I	ACTGG	2 cut(s)	675, 734
Bse3DI	GCAATG	1 cut(s)	243
Bse8I	GATNNNNATC	1 cut(s)	469
BseBI	CCWGG	2 cut(s)	581, 652
BseCI	ATCGAT	1 cut(s)	920
BseDI	CCNNGG	5 cut(s)	245, 520, 579, 580, 757
BseJI	GATNNNNATC	1 cut(s)	469
BseLI	CCNNNNNNNGG	6 cut(s)	81, 480, 573, 574, 637, 871
BseMI	GCAATG	1 cut(s)	243
BseMII	CTCAG	2 cut(s)	197, 272
BseNI	ACTGG	2 cut(s)	675, 734
BseRI	GAGGAG	7 cut(s)	163, 209, 220, 361, 364, 415, 418
BseSI	GKGCMC	1 cut(s)	580
BseXI	GCAGC	1 cut(s)	339
BseYI	CCCAGC	1 cut(s)	572
Bsh1236I	CGCG	1 cut(s)	722
Bsh1285I	CGRYCG	1 cut(s)	920
BshFI	GGCC	5 cut(s)	74, 106, 578, 650, 926
BshVI	ATCGAT	1 cut(s)	920
BsiEI	CGRYCG	1 cut(s)	920
BsiHKAI	GWGCWC	1 cut(s)	687
BsiSI	CCGG	5 cut(s)	481, 528, 631, 759, 899
BslFI	GGGAC	1 cut(s)	550
BslI	CCNNNNNNNGG	6 cut(s)	81, 480, 573, 574, 637, 871
BsmAI	GTCTC	2 cut(s)	125, 143
BsmFI	GGGAC	1 cut(s)	550
BsnI	GGCC	5 cut(s)	74, 106, 578, 650, 926
Bsp120I	GGGCCC	1 cut(s)	576
Bsp1286I	GDGCHC	2 cut(s)	580, 687
Bsp143I	GATC	6 cut(s)	459, 464, 624, 766, 889, 917
BspANI	GGCC	5 cut(s)	74, 106, 578, 650, 926
BspCNI	CTCAG	2 cut(s)	196, 273
BspDI	ATCGAT	1 cut(s)	920
BspFNI	CGCG	1 cut(s)	722
BspLI	GGNNCC	5 cut(s)	243, 526, 541, 577, 578
BspPI	GGATC	2 cut(s)	454, 459
BsrBI	CCGCTC	1 cut(s)	796
BsrDI	GCAATG	1 cut(s)	243
BsrI	ACTGG	2 cut(s)	675, 734
BssECI	CCNNGG	5 cut(s)	245, 520, 579, 580, 757
BssMI	GATC	6 cut(s)	459, 464, 624, 766, 889, 917
Bst2UI	CCWGG	2 cut(s)	581, 652
Bst4CI	ACNGT	2 cut(s)	119, 887
Bst6I	CTCTTC	1 cut(s)	165
BstC8I	GCNNGC	5 cut(s)	382, 648, 712, 785, 791
BstDEI	CTNAG	4 cut(s)	183, 259, 281, 550
BstDSI	CCRYGG	1 cut(s)	245
BstFNI	CGCG	1 cut(s)	722
BstH2I	RGCGCY	2 cut(s)	520, 790
BstHHI	GCGC	4 cut(s)	327, 519, 724, 789
BstKTI	GATC	6 cut(s)	462, 467, 627, 769, 892, 920
BstMAI	GTCTC	2 cut(s)	125, 143
BstMBI	GATC	6 cut(s)	459, 464, 624, 766, 889, 917
BstMCI	CGRYCG	1 cut(s)	920
BstMWI	GCNNNNNNNGC	5 cut(s)	333, 730, 739, 762, 793
BstNI	CCWGG	2 cut(s)	581, 652
BstNSI	RCATGY	1 cut(s)	818
BstSCI	CCNGG	4 cut(s)	479, 579, 650, 757
BstSLI	GKGCMC	1 cut(s)	580
BstUI	CGCG	1 cut(s)	722
BstV1I	GCAGC	1 cut(s)	339
BstX2I	RGATCY	1 cut(s)	459
BstYI	RGATCY	1 cut(s)	459
Bsu15I	ATCGAT	1 cut(s)	920
BsuRI	GGCC	5 cut(s)	74, 106, 578, 650, 926
BsuTUI	ATCGAT	1 cut(s)	920
BtgI	CCRYGG	1 cut(s)	245
Cac8I	GCNNGC	5 cut(s)	382, 648, 712, 785, 791
CfoI	GCGC	4 cut(s)	327, 519, 724, 789
Cfr13I	GGNCC	6 cut(s)	73, 105, 444, 576, 577, 648
ClaI	ATCGAT	1 cut(s)	920
CseI	GACGC	1 cut(s)	728
Csp6I	GTAC	3 cut(s)	6, 859, 883
CviAII	CATG	4 cut(s)	102, 815, 868, 933
CviQI	GTAC	3 cut(s)	6, 859, 883
DdeI	CTNAG	4 cut(s)	183, 259, 281, 550
DpnI	GATC	6 cut(s)	461, 466, 626, 768, 891, 919
DpnII	GATC	6 cut(s)	459, 464, 624, 766, 889, 917
EaeI	YGGCCR	1 cut(s)	924
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
EciI	GGCGGA	2 cut(s)	355, 770
Eco24I	GRGCYC	1 cut(s)	580
Eco47I	GGWCC	1 cut(s)	444
Eco57I	CTGAAG	1 cut(s)	914
EcoO109I	RGGNCCY	1 cut(s)	576
EcoRII	CCWGG	2 cut(s)	579, 650
EcoT38I	GRGCYC	1 cut(s)	580
FaeI	CATG	4 cut(s)	105, 818, 871, 936
FaqI	GGGAC	1 cut(s)	550
FatI	CATG	4 cut(s)	101, 814, 867, 932
FauI	CCCGC	5 cut(s)	152, 366, 397, 577, 639
FbaI	TGATCA	1 cut(s)	624
FblI	GTMKAC	1 cut(s)	546
Fnu4HI	GCNGC	4 cut(s)	328, 597, 763, 794
FriOI	GRGCYC	1 cut(s)	580
Fsp4HI	GCNGC	4 cut(s)	328, 597, 763, 794
FspBI	CTAG	2 cut(s)	333, 854
GlaI	GCGC	4 cut(s)	326, 518, 723, 788
GluI	GCNGC	4 cut(s)	328, 597, 763, 794
GsaI	CCCAGC	1 cut(s)	576
HaeII	RGCGCY	2 cut(s)	520, 790
HaeIII	GGCC	5 cut(s)	74, 106, 578, 650, 926
HapII	CCGG	5 cut(s)	481, 528, 631, 759, 899
HgaI	GACGC	1 cut(s)	728
HhaI	GCGC	4 cut(s)	327, 519, 724, 789
Hin1II	CATG	4 cut(s)	105, 818, 871, 936
Hin6I	GCGC	4 cut(s)	325, 517, 722, 787
HinP1I	GCGC	4 cut(s)	325, 517, 722, 787
HinfI	GANTC	2 cut(s)	347, 470
HpaII	CCGG	5 cut(s)	481, 528, 631, 759, 899
HphI	GGTGA	3 cut(s)	280, 616, 736
Hpy166II	GTNNAC	2 cut(s)	547, 883
Hpy188I	TCNGA	8 cut(s)	186, 346, 433, 464, 469, 499, 838, 894
Hpy188III	TCNNGA	1 cut(s)	854
Hpy8I	GTNNAC	2 cut(s)	547, 883
Hpy99I	CGWCG	3 cut(s)	269, 722, 812
HpyAV	CCTTC	7 cut(s)	159, 212, 216, 595, 610, 635, 655
HpyCH4III	ACNGT	2 cut(s)	119, 887
HpyCH4IV	ACGT	1 cut(s)	774
HpyF10VI	GCNNNNNNNGC	5 cut(s)	333, 730, 739, 762, 793
HpyF3I	CTNAG	4 cut(s)	183, 259, 281, 550
HpySE526I	ACGT	1 cut(s)	774
Hsp92II	CATG	4 cut(s)	105, 818, 871, 936
HspAI	GCGC	4 cut(s)	325, 517, 722, 787
Ksp22I	TGATCA	1 cut(s)	624
Kzo9I	GATC	6 cut(s)	459, 464, 624, 766, 889, 917
LmnI	GCTCC	8 cut(s)	241, 341, 347, 360, 530, 619, 633, 682
Lsp1109I	GCAGC	1 cut(s)	339
LweI	GCATC	2 cut(s)	723, 842
MaeI	CTAG	2 cut(s)	333, 854
MaeII	ACGT	1 cut(s)	774
MalI	GATC	6 cut(s)	461, 466, 626, 768, 891, 919
MbiI	CCGCTC	1 cut(s)	796
MboI	GATC	6 cut(s)	459, 464, 624, 766, 889, 917
MboII	GAAGA	1 cut(s)	152
MflI	RGATCY	1 cut(s)	459
MhlI	GDGCHC	2 cut(s)	580, 687
MlsI	TGGCCA	1 cut(s)	926
MluCI	AATT	2 cut(s)	506, 876
MluNI	TGGCCA	1 cut(s)	926
MmeI	TCCRAC	2 cut(s)	456, 660
Mox20I	TGGCCA	1 cut(s)	926
MscI	TGGCCA	1 cut(s)	926
MseI	TTAA	1 cut(s)	958
Msp20I	TGGCCA	1 cut(s)	926
MspA1I	CMGCKG	1 cut(s)	572
MspI	CCGG	5 cut(s)	481, 528, 631, 759, 899
MspR9I	CCNGG	4 cut(s)	481, 581, 652, 759
MvaI	CCWGG	2 cut(s)	581, 652
MvnI	CGCG	1 cut(s)	722
MwoI	GCNNNNNNNGC	5 cut(s)	333, 730, 739, 762, 793
NciI	CCSGG	2 cut(s)	481, 759
NdeII	GATC	6 cut(s)	459, 464, 624, 766, 889, 917
NlaIII	CATG	4 cut(s)	105, 818, 871, 936
NlaIV	GGNNCC	5 cut(s)	243, 526, 541, 577, 578
NmeAIII	GCCGAG	2 cut(s)	501, 580
NspI	RCATGY	1 cut(s)	818
PasI	CCCWGGG	1 cut(s)	580
PcsI	WCGNNNNNNNCGW	4 cut(s)	261, 528, 707, 816
PfeI	GAWTC	2 cut(s)	347, 470
PflMI	CCANNNNNTGG	1 cut(s)	871
PkrI	GCNGC	4 cut(s)	329, 598, 764, 795
Ple19I	CGATCG	1 cut(s)	920
Psp6I	CCWGG	2 cut(s)	579, 650
PspFI	CCCAGC	1 cut(s)	572
PspGI	CCWGG	2 cut(s)	579, 650
PspN4I	GGNNCC	5 cut(s)	243, 526, 541, 577, 578
PspOMI	GGGCCC	1 cut(s)	576
PspPI	GGNCC	6 cut(s)	73, 105, 444, 576, 577, 648
PsuI	RGATCY	1 cut(s)	459
PvuI	CGATCG	1 cut(s)	920
RsaI	GTAC	3 cut(s)	7, 860, 884
RsaNI	GTAC	3 cut(s)	6, 859, 883
SaqAI	TTAA	1 cut(s)	958
SatI	GCNGC	4 cut(s)	328, 597, 763, 794
Sau3AI	GATC	6 cut(s)	459, 464, 624, 766, 889, 917
Sau96I	GGNCC	6 cut(s)	73, 105, 444, 576, 577, 648
ScrFI	CCNGG	4 cut(s)	481, 581, 652, 759
SduI	GDGCHC	2 cut(s)	580, 687
SfaNI	GCATC	2 cut(s)	723, 842
SinI	GGWCC	1 cut(s)	444
Sse9I	AATT	2 cut(s)	506, 876
SspMI	CTAG	2 cut(s)	333, 854
StyD4I	CCNGG	4 cut(s)	479, 579, 650, 757
TaaI	ACNGT	2 cut(s)	119, 887
TaiI	ACGT	1 cut(s)	777
TaqI	TCGA	4 cut(s)	717, 807, 916, 920
TasI	AATT	2 cut(s)	506, 876
TauI	GCSGC	3 cut(s)	599, 765, 796
TfiI	GAWTC	2 cut(s)	347, 470
Tru1I	TTAA	1 cut(s)	958
Tru9I	TTAA	1 cut(s)	958
TseI	GCWGC	1 cut(s)	327
TspGWI	ACGGA	2 cut(s)	385, 532
Van91I	CCANNNNNTGG	1 cut(s)	871
VpaK11BI	GGWCC	1 cut(s)	444
XapI	RAATTY	1 cut(s)	506
XbaI	TCTAGA	1 cut(s)	853
XceI	RCATGY	1 cut(s)	818
XmiI	GTMKAC	1 cut(s)	546
XspI	CTAG	2 cut(s)	333, 854

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.