pycom11g13070
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0010356
Physical Location & Seq
Forward (+)
12202469 .. 12202792
324 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g13070.1

Sequence Viewer

Length: 324 bp
ATGGAGCCCTGTCTGGACGACTTAGCCGATGACCTCCAAAGCCTGAGCTTCACCTCCACCACAACCACCAACACCACCACCACCAAGCGCAGCACCAGCTCCTGCTCCGAATCCACGCTGCCGCCCTCCGCCTCCTCCTCCGCTCGCCTCCCCGCCTCCGTAGTCCCCAAGTCCCGACCCCAATCCTGTTCCTCCGACCCTCTCTGGTCCGCAATCTACAAGATCGATCCGAATCCCCGACCCGGCAACTCTCCCTCTCTGACCTCAAATTCGCCGAGCGCCTCGGCTCCGGCGACATCGGCTCCGTCTACTTGGCCGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

108

Amino Acids

11.06

Weight (kDa)

5.03

Isoelectric Point (pI)

82.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 143
AccI GTMKAC 1 cut(s) 308
AciI CCGC 5 cut(s) 122, 129, 141, 153, 210
AclWI GGATC 1 cut(s) 221
AcoI YGGCCR 1 cut(s) 314
AcsI RAATTY 1 cut(s) 268
AfiI CCNNNNNNNGG 1 cut(s) 242
AluBI AGCT 2 cut(s) 48, 99
AluI AGCT 2 cut(s) 48, 99
AlwI GGATC 1 cut(s) 221
AlwNI CAGNNNCTG 1 cut(s) 102
AoxI GGCC 1 cut(s) 314
ApeKI GCWGC 2 cut(s) 90, 118
ApoI RAATTY 1 cut(s) 268
ArsI GACNNNNNNTTYG 2 cut(s) 253, 285
AspLEI GCGC 2 cut(s) 90, 281
AspS9I GGNCC 1 cut(s) 207
AsuC2I CCSGG 1 cut(s) 243
AsuHPI GGTGA 1 cut(s) 43
AvaII GGWCC 1 cut(s) 207
BanII GRGCYC 1 cut(s) 9
BbvI GCAGC 2 cut(s) 102, 105
BcnI CCSGG 1 cut(s) 243
BfoI RGCGCY 1 cut(s) 282
BisI GCNGC 3 cut(s) 91, 119, 122
BlsI GCNGC 3 cut(s) 92, 120, 123
Bme1390I CCNGG 1 cut(s) 243
Bme18I GGWCC 1 cut(s) 207
BmgT120I GGNCC 1 cut(s) 207
BmiI GGNNCC 3 cut(s) 6, 288, 303
BmrFI CCNGG 1 cut(s) 243
Bpu10I CCTNAGC 1 cut(s) 44
BpuMI CCSGG 1 cut(s) 243
Bsa29I ATCGAT 1 cut(s) 225
BsaBI GATNNNNATC 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 282
BsaXI ACNNNNNCTCC 2 cut(s) 286, 316
Bsc4I CCNNNNNNNGG 1 cut(s) 242
Bse8I GATNNNNATC 1 cut(s) 231
BseCI ATCGAT 1 cut(s) 225
BseDI CCNNGG 1 cut(s) 282
BseJI GATNNNNATC 1 cut(s) 231
BseLI CCNNNNNNNGG 1 cut(s) 242
BseMII CTCAG 1 cut(s) 35
BseRI GAGGAG 2 cut(s) 124, 127
BseXI GCAGC 2 cut(s) 102, 105
BshFI GGCC 1 cut(s) 316
BshVI ATCGAT 1 cut(s) 225
BsiSI CCGG 2 cut(s) 243, 290
BslFI GGGAC 2 cut(s) 149, 157
BslI CCNNNNNNNGG 1 cut(s) 242
BsmFI GGGAC 2 cut(s) 149, 157
BsnI GGCC 1 cut(s) 316
Bsp1286I GDGCHC 1 cut(s) 9
Bsp143I GATC 2 cut(s) 222, 226
BspACI CCGC 5 cut(s) 122, 129, 141, 153, 210
BspANI GGCC 1 cut(s) 316
BspCNI CTCAG 1 cut(s) 36
BspDI ATCGAT 1 cut(s) 225
BspLI GGNNCC 3 cut(s) 6, 288, 303
BspPI GGATC 1 cut(s) 221
BsrBI CCGCTC 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 282
BssMI GATC 2 cut(s) 222, 226
BstC8I GCNNGC 1 cut(s) 145
BstDEI CTNAG 2 cut(s) 22, 44
BstH2I RGCGCY 1 cut(s) 282
BstHHI GCGC 2 cut(s) 90, 281
BstKTI GATC 2 cut(s) 225, 229
BstMBI GATC 2 cut(s) 222, 226
BstMWI GCNNNNNNNGC 2 cut(s) 96, 299
BstSCI CCNGG 1 cut(s) 241
BstV1I GCAGC 2 cut(s) 102, 105
Bsu15I ATCGAT 1 cut(s) 225
BsuRI GGCC 1 cut(s) 316
BsuTUI ATCGAT 1 cut(s) 225
Cac8I GCNNGC 1 cut(s) 145
CaiI CAGNNNCTG 1 cut(s) 102
CfoI GCGC 2 cut(s) 90, 281
Cfr13I GGNCC 1 cut(s) 207
ClaI ATCGAT 1 cut(s) 225
CviJI RGCY 8 cut(s) 7, 26, 42, 48, 99, 287, 302, 316
CviKI_1 RGCY 8 cut(s) 7, 26, 42, 48, 99, 287, 302, 316
DdeI CTNAG 2 cut(s) 22, 44
DpnI GATC 2 cut(s) 224, 228
DpnII GATC 2 cut(s) 222, 226
EaeI YGGCCR 1 cut(s) 314
EciI GGCGGA 1 cut(s) 118
Eco24I GRGCYC 1 cut(s) 9
Eco47I GGWCC 1 cut(s) 207
EcoT38I GRGCYC 1 cut(s) 9
FaqI GGGAC 2 cut(s) 149, 157
FauI CCCGC 1 cut(s) 160
FblI GTMKAC 1 cut(s) 308
Fnu4HI GCNGC 3 cut(s) 91, 119, 122
FriOI GRGCYC 1 cut(s) 9
Fsp4HI GCNGC 3 cut(s) 91, 119, 122
GlaI GCGC 2 cut(s) 89, 280
GluI GCNGC 3 cut(s) 91, 119, 122
HaeII RGCGCY 1 cut(s) 282
HaeIII GGCC 1 cut(s) 316
HapII CCGG 2 cut(s) 243, 290
HhaI GCGC 2 cut(s) 90, 281
Hin6I GCGC 2 cut(s) 88, 279
HinP1I GCGC 2 cut(s) 88, 279
HinfI GANTC 2 cut(s) 110, 232
HpaII CCGG 2 cut(s) 243, 290
HphI GGTGA 1 cut(s) 43
Hpy166II GTNNAC 1 cut(s) 309
Hpy188I TCNGA 4 cut(s) 109, 196, 231, 261
Hpy188III TCNNGA 2 cut(s) 14, 174
Hpy8I GTNNAC 1 cut(s) 309
HpyF10VI GCNNNNNNNGC 2 cut(s) 96, 299
HpyF3I CTNAG 2 cut(s) 22, 44
HspAI GCGC 2 cut(s) 88, 279
Kzo9I GATC 2 cut(s) 222, 226
LmnI GCTCC 5 cut(s) 4, 104, 110, 292, 307
LpnPI CCDG 8 cut(s) 22, 56, 109, 115, 190, 199, 256, 303
Lsp1109I GCAGC 2 cut(s) 102, 105
MalI GATC 2 cut(s) 224, 228
MbiI CCGCTC 1 cut(s) 143
MboI GATC 2 cut(s) 222, 226
MhlI GDGCHC 1 cut(s) 9
MluCI AATT 1 cut(s) 268
MmeI TCCRAC 1 cut(s) 219
MspI CCGG 2 cut(s) 243, 290
MspR9I CCNGG 1 cut(s) 243
MwoI GCNNNNNNNGC 2 cut(s) 96, 299
NciI CCSGG 1 cut(s) 243
NdeII GATC 2 cut(s) 222, 226
NlaIV GGNNCC 3 cut(s) 6, 288, 303
NmeAIII GCCGAG 2 cut(s) 263, 300
PcsI WCGNNNNNNNCGW 2 cut(s) 24, 290
PfeI GAWTC 2 cut(s) 110, 232
PkrI GCNGC 3 cut(s) 92, 120, 123
PspN4I GGNNCC 3 cut(s) 6, 288, 303
PspPI GGNCC 1 cut(s) 207
PstNI CAGNNNCTG 1 cut(s) 102
SatI GCNGC 3 cut(s) 91, 119, 122
Sau3AI GATC 2 cut(s) 222, 226
Sau96I GGNCC 1 cut(s) 207
ScrFI CCNGG 1 cut(s) 243
SduI GDGCHC 1 cut(s) 9
SetI ASST 5 cut(s) 36, 50, 56, 101, 266
SinI GGWCC 1 cut(s) 207
Sse9I AATT 1 cut(s) 268
SsiI CCGC 5 cut(s) 122, 129, 141, 153, 210
StyD4I CCNGG 1 cut(s) 241
TaqI TCGA 1 cut(s) 225
TasI AATT 1 cut(s) 268
TauI GCSGC 1 cut(s) 124
TfiI GAWTC 2 cut(s) 110, 232
TseI GCWGC 2 cut(s) 90, 118
TspGWI ACGGA 2 cut(s) 148, 294
VpaK11BI GGWCC 1 cut(s) 207
XapI RAATTY 1 cut(s) 268
XmiI GTMKAC 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.