Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8165238.1

Orthogroup ID

OG0010356

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 620

Gene Structure 620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8165238.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 575 bp

atggagccgtggcttgatgacttagccgacgatctccagagcatcagcttcacctccacggccacaaccgcagccaccgaatccaaacgaagcacaagctccggctccgaagccacgctaaccgcctcgtgctcctcctcggctcgcctcggctccctcctcgccaagccccgagccccgtcctcggacccccgctggtccgcaatccacaagatccgatccgagtccccgacccgacagctggccctctcggacctcaaattctccgagcggctcggctccggcgacatcgggtcggtgtacctggccgagctgaagtccggcgacggcaaggggtgcgtgttcgcggcgaaagtgatggacaagaaggagctgattagtcggagcaaggaagggagggcgaggacagagagggaaatactggaattgttggagcacccatttttgcccacgctctacgccagtatagacgcgcccaactggcttttcttgctcaccgagttctgccccggcggtgacctccatgttctccgacaacgccagcctttgaaacgcttccatgagtctgccgtcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

191

Amino Acids

20.91

Weight (kDa)

6.91

Isoelectric Point (pI)

57.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44610
fragaria_vesca	FvH4_3g24290
malus_domestica	MD03G1137900.v1.1 MD11G1160000.v1.1
prunus_persica	Prupe.6G122900_v2.0.a1 Prupe.6G122900_v2.0.a1
pyrus_communis	pycom03g09350 pycom11g13070 pycom11g13080
rosa_chinensis	RchiOBHm_Chr5g0043661
rosa_laevigata	RLG00000034208
rosa_multiflora	Rmu_co8165238.1_g000001 Rmu_sc0009127.1_g000001 Rmu_sc0038880.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037380
rosa_rugosa	Rorug05G0206900
rosa_samantha	Rh5AG291900 Rh5BG299300 Rh5CG328200 Rh5DG308200
rosa_wichuraiana	Rw5G027100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	271
AccII	CGCG	2 cut(s)	347, 473
AciI	CCGC	7 cut(s)	69, 123, 193, 201, 271, 347, 513
AclWI	GGATC	2 cut(s)	208, 213
AcoI	YGGCCR	2 cut(s)	60, 306
AcsI	RAATTY	1 cut(s)	260
AcuI	CTGAAG	1 cut(s)	335
AfaI	GTAC	1 cut(s)	302
AfiI	CCNNNNNNNGG	2 cut(s)	184, 241
AgsI	TTSAA	1 cut(s)	550
AhdI	GACNNNNNGTC	1 cut(s)	292
AjnI	CCWGG	1 cut(s)	303
AjuI	GAANNNNNNNTTGG	2 cut(s)	470, 502
AluBI	AGCT	5 cut(s)	48, 99, 241, 313, 373
AluI	AGCT	5 cut(s)	48, 99, 241, 313, 373
Alw21I	GWGCWC	2 cut(s)	134, 438
AlwI	GGATC	2 cut(s)	208, 213
Ama87I	CYCGRG	1 cut(s)	171
AoxI	GGCC	3 cut(s)	60, 243, 306
ApeKI	GCWGC	1 cut(s)	71
ApoI	RAATTY	1 cut(s)	260
Asp700I	GAANNNNTTC	1 cut(s)	554
AspLEI	GCGC	1 cut(s)	475
AspS9I	GGNCC	4 cut(s)	187, 198, 244, 253
AsuC2I	CCSGG	1 cut(s)	510
AsuHPI	GGTGA	3 cut(s)	43, 487, 527
AvaI	CYCGRG	1 cut(s)	171
AvaII	GGWCC	3 cut(s)	187, 198, 253
BanII	GRGCYC	1 cut(s)	178
BauI	CACGAG	1 cut(s)	127
Bbv12I	GWGCWC	2 cut(s)	134, 438
BbvI	GCAGC	1 cut(s)	83
BccI	CCATC	1 cut(s)	352
BceAI	ACGGC	3 cut(s)	75, 343, 554
BciT130I	CCWGG	1 cut(s)	305
BcnI	CCSGG	1 cut(s)	510
BglI	GCCNNNNNGGC	1 cut(s)	481
BisI	GCNGC	3 cut(s)	72, 272, 348
BlsI	GCNGC	3 cut(s)	73, 273, 349
Bme1390I	CCNGG	2 cut(s)	305, 510
Bme18I	GGWCC	3 cut(s)	187, 198, 253
BmeRI	GACNNNNNGTC	1 cut(s)	292
BmeT110I	CYCGRG	1 cut(s)	171
BmgT120I	GGNCC	4 cut(s)	187, 198, 244, 253
BmiI	GGNNCC	5 cut(s)	6, 106, 154, 189, 280
BmrFI	CCNGG	2 cut(s)	305, 510
BmsI	GCATC	1 cut(s)	51
BpmI	CTGGAG	1 cut(s)	20
BpuMI	CCSGG	1 cut(s)	510
BsaJI	CCNNGG	6 cut(s)	8, 57, 138, 148, 183, 508
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 241
Bse1I	ACTGG	3 cut(s)	426, 462, 485
BseBI	CCWGG	1 cut(s)	305
BseDI	CCNNGG	6 cut(s)	8, 57, 138, 148, 183, 508
BseLI	CCNNNNNNNGG	2 cut(s)	184, 241
BseNI	ACTGG	3 cut(s)	426, 462, 485
BseRI	GAGGAG	3 cut(s)	124, 127, 149
BseXI	GCAGC	1 cut(s)	83
Bsh1236I	CGCG	2 cut(s)	347, 473
BshFI	GGCC	3 cut(s)	62, 245, 308
BsiHKAI	GWGCWC	2 cut(s)	134, 438
BsiHKCI	CYCGRG	1 cut(s)	171
BsiSI	CCGG	4 cut(s)	102, 282, 321, 510
BslFI	GGGAC	1 cut(s)	211
BslI	CCNNNNNNNGG	2 cut(s)	184, 241
BsmFI	GGGAC	1 cut(s)	211
BsnI	GGCC	3 cut(s)	62, 245, 308
BsoBI	CYCGRG	1 cut(s)	171
Bsp1286I	GDGCHC	3 cut(s)	134, 178, 438
Bsp143I	GATC	3 cut(s)	31, 213, 218
BspACI	CCGC	7 cut(s)	69, 123, 193, 201, 271, 347, 513
BspANI	GGCC	3 cut(s)	62, 245, 308
BspFNI	CGCG	2 cut(s)	347, 473
BspLI	GGNNCC	5 cut(s)	6, 106, 154, 189, 280
BspPI	GGATC	2 cut(s)	208, 213
BsrBI	CCGCTC	1 cut(s)	271
BsrI	ACTGG	3 cut(s)	426, 462, 485
BssECI	CCNNGG	6 cut(s)	8, 57, 138, 148, 183, 508
BssMI	GATC	3 cut(s)	31, 213, 218
BssSI	CACGAG	1 cut(s)	127
Bst2BI	CACGAG	1 cut(s)	127
Bst2UI	CCWGG	1 cut(s)	305
BstAPI	GCANNNNNTGC	1 cut(s)	336
BstC8I	GCNNGC	3 cut(s)	145, 243, 542
BstDEI	CTNAG	1 cut(s)	22
BstDSI	CCRYGG	2 cut(s)	8, 57
BstEII	GGTNACC	1 cut(s)	515
BstFNI	CGCG	2 cut(s)	347, 473
BstHHI	GCGC	1 cut(s)	475
BstKTI	GATC	3 cut(s)	34, 216, 221
BstMBI	GATC	3 cut(s)	31, 213, 218
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 336, 481, 490
BstNI	CCWGG	1 cut(s)	305
BstPI	GGTNACC	1 cut(s)	515
BstSCI	CCNGG	2 cut(s)	303, 508
BstUI	CGCG	2 cut(s)	347, 473
BstV1I	GCAGC	1 cut(s)	83
BstX2I	RGATCY	1 cut(s)	213
BstYI	RGATCY	1 cut(s)	213
BsuRI	GGCC	3 cut(s)	62, 245, 308
BtgI	CCRYGG	2 cut(s)	8, 57
Cac8I	GCNNGC	3 cut(s)	145, 243, 542
CfoI	GCGC	1 cut(s)	475
Cfr13I	GGNCC	4 cut(s)	187, 198, 244, 253
CseI	GACGC	1 cut(s)	479
Csp6I	GTAC	1 cut(s)	301
CviAII	CATG	2 cut(s)	524, 560
CviQI	GTAC	1 cut(s)	301
DdeI	CTNAG	1 cut(s)	22
DpnI	GATC	3 cut(s)	33, 215, 220
DpnII	GATC	3 cut(s)	31, 213, 218
DriI	GACNNNNNGTC	1 cut(s)	292
EaeI	YGGCCR	2 cut(s)	60, 306
Eam1105I	GACNNNNNGTC	1 cut(s)	292
Eco24I	GRGCYC	1 cut(s)	178
Eco47I	GGWCC	3 cut(s)	187, 198, 253
Eco57I	CTGAAG	1 cut(s)	335
Eco88I	CYCGRG	1 cut(s)	171
Eco91I	GGTNACC	1 cut(s)	515
EcoO65I	GGTNACC	1 cut(s)	515
EcoRII	CCWGG	1 cut(s)	303
EcoT38I	GRGCYC	1 cut(s)	178
FaeI	CATG	2 cut(s)	527, 563
FaiI	YATR	3 cut(s)	467, 525, 561
FaqI	GGGAC	1 cut(s)	211
FatI	CATG	2 cut(s)	523, 559
FauI	CCCGC	1 cut(s)	200
Fnu4HI	GCNGC	3 cut(s)	72, 272, 348
FriOI	GRGCYC	1 cut(s)	178
Fsp4HI	GCNGC	3 cut(s)	72, 272, 348
GlaI	GCGC	1 cut(s)	474
GluI	GCNGC	3 cut(s)	72, 272, 348
GsuI	CTGGAG	1 cut(s)	20
HaeIII	GGCC	3 cut(s)	62, 245, 308
HapII	CCGG	4 cut(s)	102, 282, 321, 510
HgaI	GACGC	1 cut(s)	479
HhaI	GCGC	1 cut(s)	475
Hin1II	CATG	2 cut(s)	527, 563
Hin6I	GCGC	1 cut(s)	473
HinP1I	GCGC	1 cut(s)	473
HinfI	GANTC	3 cut(s)	80, 224, 563
HpaII	CCGG	4 cut(s)	102, 282, 321, 510
HphI	GGTGA	3 cut(s)	43, 487, 527
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	8 cut(s)	109, 187, 218, 223, 253, 268, 384, 533
Hpy188III	TCNNGA	1 cut(s)	37
Hpy8I	GTNNAC	1 cut(s)	301
Hpy99I	CGWCG	2 cut(s)	32, 329
HpyAV	CCTTC	2 cut(s)	361, 386
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 336, 481, 490
HpyF3I	CTNAG	1 cut(s)	22
Hsp92II	CATG	2 cut(s)	527, 563
HspAI	GCGC	1 cut(s)	473
Kzo9I	GATC	3 cut(s)	31, 213, 218
LmnI	GCTCC	9 cut(s)	4, 104, 110, 137, 158, 284, 370, 384, 433
Lsp1109I	GCAGC	1 cut(s)	83
LweI	GCATC	1 cut(s)	51
MaeIII	GTNAC	1 cut(s)	515
MalI	GATC	3 cut(s)	33, 215, 220
MbiI	CCGCTC	1 cut(s)	271
MboI	GATC	3 cut(s)	31, 213, 218
MflI	RGATCY	1 cut(s)	213
MhlI	GDGCHC	3 cut(s)	134, 178, 438
MluCI	AATT	2 cut(s)	260, 425
MlyI	GAGTC	2 cut(s)	233, 572
MmeI	TCCRAC	3 cut(s)	362, 411, 556
MroXI	GAANNNNTTC	1 cut(s)	554
MspA1I	CMGCKG	2 cut(s)	195, 241
MspI	CCGG	4 cut(s)	102, 282, 321, 510
MspR9I	CCNGG	2 cut(s)	305, 510
MvaI	CCWGG	1 cut(s)	305
MvnI	CGCG	2 cut(s)	347, 473
MwoI	GCNNNNNNNGC	4 cut(s)	68, 336, 481, 490
NciI	CCSGG	1 cut(s)	510
NdeII	GATC	3 cut(s)	31, 213, 218
NlaIII	CATG	2 cut(s)	527, 563
NlaIV	GGNNCC	5 cut(s)	6, 106, 154, 189, 280
NmeAIII	GCCGAG	4 cut(s)	119, 129, 255, 334
NmuCI	GTSAC	1 cut(s)	515
PcsI	WCGNNNNNNNCGW	1 cut(s)	282
PdmI	GAANNNNTTC	1 cut(s)	554
PfeI	GAWTC	1 cut(s)	80
PkrI	GCNGC	3 cut(s)	73, 273, 349
PleI	GAGTC	2 cut(s)	232, 571
PpsI	GAGTC	2 cut(s)	232, 571
Psp6I	CCWGG	1 cut(s)	303
PspEI	GGTNACC	1 cut(s)	515
PspGI	CCWGG	1 cut(s)	303
PspN4I	GGNNCC	5 cut(s)	6, 106, 154, 189, 280
PspPI	GGNCC	4 cut(s)	187, 198, 244, 253
PsuI	RGATCY	1 cut(s)	213
PvuII	CAGCTG	1 cut(s)	241
RsaI	GTAC	1 cut(s)	302
RsaNI	GTAC	1 cut(s)	301
SatI	GCNGC	3 cut(s)	72, 272, 348
Sau3AI	GATC	3 cut(s)	31, 213, 218
Sau96I	GGNCC	4 cut(s)	187, 198, 244, 253
SchI	GAGTC	2 cut(s)	233, 572
ScrFI	CCNGG	2 cut(s)	305, 510
SduI	GDGCHC	3 cut(s)	134, 178, 438
SetI	ASST	9 cut(s)	50, 56, 101, 243, 258, 306, 315, 375, 522
SfaNI	GCATC	1 cut(s)	51
SinI	GGWCC	3 cut(s)	187, 198, 253
Sse9I	AATT	2 cut(s)	260, 425
SsiI	CCGC	7 cut(s)	69, 123, 193, 201, 271, 347, 513
StyD4I	CCNGG	2 cut(s)	303, 508
TasI	AATT	2 cut(s)	260, 425
TauI	GCSGC	2 cut(s)	274, 350
TfiI	GAWTC	1 cut(s)	80
TseFI	GTSAC	1 cut(s)	515
TseI	GCWGC	1 cut(s)	71
Tsp45I	GTSAC	1 cut(s)	515
VpaK11BI	GGWCC	3 cut(s)	187, 198, 253
XapI	RAATTY	1 cut(s)	260
XmnI	GAANNNNTTC	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.