Rmu_sc0009127.1_g000001
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009127.1
OG0010356
Physical Location & Seq
Reverse (-)
2 .. 3482
3481 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009127.1_g000001.1.cds

Sequence Viewer

Length: 1019 bp
atggagccgtggcttgatgacttagccgacgatctccagagcatcagcttcacctccacggccacaaccgcagccaccgaatccaaacgaagcacaagctccggctccgaagccacgctaaccgcctcgtgctcctcctcggctcgcctcggctccctcctcgccaagccccgagccccgtcctcggacccccgctggtccgcaatccacaagatccgatccgagtccccgacccgacagctggccctctcggacctcaaattctccgagcggctcggctccggcgacatcgggtcggtgtacctggccgagctgaagtccggcgacggcaaggggtgcgtgttcgcggcgaaagtgatggacaagaaggagctgattagtcggagcaaggaagggagggcgaggacagagagggaaatactggaattgttggagcacccatttttgcccacgctctacgccagtatagacgcgcccaactggcttttcttgctcaccgagttctgccccggcggtgacctccatgttctccgacaacgccagcctttgaaacgcttccatgagtctgccgtcaggttctatgcatccgaagtggttgtagctctagagtaccttcacatgatgggaattgtgtatcgtgatctcaagcccgaaaacgttttagttcgatccgatggccacatcatgctcacagattttgacctctcattgaaatgcgatgatgttgcatctgctgctcatataatttctgatcaaaacactccagtcgccgcccctcaaaaagactatgcagttgatccacctcgctttacctcatcttcatgcatcattccaaattgtatagttcctgctgtgtcatgtttccacccgaagagcaagcgcaagaagaagaagcagggccatcgggacggacctgagtttgtggctgagcctgttgacgtccggtccatgtcttttgttgggactcacgaatacttggcccctgagattgtgtccggtgaggggcatggtagtgcggt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

340

Amino Acids

37.27

Weight (kDa)

6.42

Isoelectric Point (pI)

53.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 942
AccBSI CCGCTC 1 cut(s) 271
AccII CGCG 2 cut(s) 347, 473
AciI CCGC 9 cut(s) 69, 123, 193, 201, 271, 347, 513, 771, 1016
AclI AACGTT 1 cut(s) 657
AclWI GGATC 4 cut(s) 208, 213, 663, 791
AcoI YGGCCR 3 cut(s) 60, 306, 676
AcsI RAATTY 1 cut(s) 260
AcuI CTGAAG 1 cut(s) 335
AcyI GRCGYC 1 cut(s) 939
AfaI GTAC 2 cut(s) 302, 611
AfiI CCNNNNNNNGG 3 cut(s) 184, 241, 1002
AgsI TTSAA 2 cut(s) 550, 712
AhdI GACNNNNNGTC 2 cut(s) 292, 943
AjnI CCWGG 1 cut(s) 303
AjuI GAANNNNNNNTTGG 2 cut(s) 470, 502
AluBI AGCT 6 cut(s) 48, 99, 241, 313, 373, 602
AluI AGCT 6 cut(s) 48, 99, 241, 313, 373, 602
Alw21I GWGCWC 2 cut(s) 134, 438
AlwI GGATC 4 cut(s) 208, 213, 663, 791
Ama87I CYCGRG 1 cut(s) 171
AoxI GGCC 6 cut(s) 60, 243, 306, 676, 898, 978
ApeKI GCWGC 2 cut(s) 71, 734
ApoI RAATTY 1 cut(s) 260
Asp700I GAANNNNTTC 1 cut(s) 554
AspLEI GCGC 2 cut(s) 475, 882
AspS9I GGNCC 8 cut(s) 187, 198, 244, 253, 898, 911, 945, 979
AsuC2I CCSGG 1 cut(s) 510
AsuHPI GGTGA 4 cut(s) 43, 487, 527, 1010
AvaI CYCGRG 1 cut(s) 171
AvaII GGWCC 5 cut(s) 187, 198, 253, 911, 945
BalI TGGCCA 1 cut(s) 678
BanII GRGCYC 1 cut(s) 178
BauI CACGAG 1 cut(s) 127
Bbv12I GWGCWC 2 cut(s) 134, 438
BbvI GCAGC 2 cut(s) 83, 721
BccI CCATC 4 cut(s) 352, 616, 668, 909
BceAI ACGGC 3 cut(s) 75, 343, 554
BcgI CGANNNNNNTGC 4 cut(s) 707, 741, 884, 918
BciT130I CCWGG 1 cut(s) 305
BclI TGATCA 1 cut(s) 751
BcnI CCSGG 1 cut(s) 510
BfaI CTAG 1 cut(s) 605
BglI GCCNNNNNGGC 1 cut(s) 481
BisI GCNGC 5 cut(s) 72, 272, 348, 735, 771
BlpI GCTNAGC 1 cut(s) 927
BlsI GCNGC 5 cut(s) 73, 273, 349, 736, 772
Bme1390I CCNGG 2 cut(s) 305, 510
Bme18I GGWCC 5 cut(s) 187, 198, 253, 911, 945
BmeRI GACNNNNNGTC 2 cut(s) 292, 943
BmeT110I CYCGRG 1 cut(s) 171
BmgT120I GGNCC 8 cut(s) 187, 198, 244, 253, 898, 911, 945, 979
BmiI GGNNCC 6 cut(s) 6, 106, 154, 189, 280, 981
BmrFI CCNGG 2 cut(s) 305, 510
BmsI GCATC 4 cut(s) 51, 593, 737, 834
BpmI CTGGAG 2 cut(s) 20, 747
Bpu1102I GCTNAGC 1 cut(s) 927
BpuEI CTTGAG 1 cut(s) 629
BpuMI CCSGG 1 cut(s) 510
BsaHI GRCGYC 1 cut(s) 939
BsaJI CCNNGG 6 cut(s) 8, 57, 138, 148, 183, 508
BsaWI WCCGGW 2 cut(s) 942, 995
Bsc4I CCNNNNNNNGG 3 cut(s) 184, 241, 1002
Bse1I ACTGG 4 cut(s) 426, 462, 485, 764
BseBI CCWGG 1 cut(s) 305
BseDI CCNNGG 6 cut(s) 8, 57, 138, 148, 183, 508
BseGI GGATG 1 cut(s) 584
BseLI CCNNNNNNNGG 3 cut(s) 184, 241, 1002
BseMII CTCAG 3 cut(s) 906, 918, 975
BseNI ACTGG 4 cut(s) 426, 462, 485, 764
BseRI GAGGAG 3 cut(s) 124, 127, 149
BseXI GCAGC 2 cut(s) 83, 721
Bsh1236I CGCG 2 cut(s) 347, 473
BshFI GGCC 6 cut(s) 62, 245, 308, 678, 900, 980
BsiHKAI GWGCWC 2 cut(s) 134, 438
BsiHKCI CYCGRG 1 cut(s) 171
BsiSI CCGG 6 cut(s) 102, 282, 321, 510, 943, 996
BslFI GGGAC 3 cut(s) 211, 920, 976
BslI CCNNNNNNNGG 3 cut(s) 184, 241, 1002
BsmFI GGGAC 3 cut(s) 211, 920, 976
BsnI GGCC 6 cut(s) 62, 245, 308, 678, 900, 980
BsoBI CYCGRG 1 cut(s) 171
Bsp1286I GDGCHC 3 cut(s) 134, 178, 438
Bsp143I GATC 7 cut(s) 31, 213, 218, 640, 668, 751, 796
Bsp1720I GCTNAGC 1 cut(s) 927
BspACI CCGC 9 cut(s) 69, 123, 193, 201, 271, 347, 513, 771, 1016
BspANI GGCC 6 cut(s) 62, 245, 308, 678, 900, 980
BspCNI CTCAG 3 cut(s) 907, 919, 976
BspFNI CGCG 2 cut(s) 347, 473
BspLI GGNNCC 6 cut(s) 6, 106, 154, 189, 280, 981
BspPI GGATC 4 cut(s) 208, 213, 663, 791
BspQI GCTCTTC 1 cut(s) 866
BsrBI CCGCTC 1 cut(s) 271
BsrI ACTGG 4 cut(s) 426, 462, 485, 764
BssECI CCNNGG 6 cut(s) 8, 57, 138, 148, 183, 508
BssMI GATC 7 cut(s) 31, 213, 218, 640, 668, 751, 796
BssNI GRCGYC 1 cut(s) 939
BssSI CACGAG 1 cut(s) 127
Bst2BI CACGAG 1 cut(s) 127
Bst2UI CCWGG 1 cut(s) 305
Bst6I CTCTTC 1 cut(s) 866
BstACI GRCGYC 1 cut(s) 939
BstAPI GCANNNNNTGC 2 cut(s) 336, 734
BstC8I GCNNGC 4 cut(s) 145, 243, 542, 878
BstDEI CTNAG 4 cut(s) 22, 915, 927, 984
BstDSI CCRYGG 2 cut(s) 8, 57
BstEII GGTNACC 1 cut(s) 515
BstF5I GGATG 1 cut(s) 584
BstFNI CGCG 2 cut(s) 347, 473
BstHHI GCGC 2 cut(s) 475, 882
BstKTI GATC 7 cut(s) 34, 216, 221, 643, 671, 754, 799
BstMBI GATC 7 cut(s) 31, 213, 218, 640, 668, 751, 796
BstMWI GCNNNNNNNGC 5 cut(s) 68, 336, 481, 490, 734
BstNI CCWGG 1 cut(s) 305
BstPI GGTNACC 1 cut(s) 515
BstSCI CCNGG 2 cut(s) 303, 508
BstUI CGCG 2 cut(s) 347, 473
BstV1I GCAGC 2 cut(s) 83, 721
BstX2I RGATCY 1 cut(s) 213
BstYI RGATCY 1 cut(s) 213
BsuRI GGCC 6 cut(s) 62, 245, 308, 678, 900, 980
BtgI CCRYGG 2 cut(s) 8, 57
BtgZI GCGATG 1 cut(s) 732
BtsCI GGATG 1 cut(s) 584
Cac8I GCNNGC 4 cut(s) 145, 243, 542, 878
CfoI GCGC 2 cut(s) 475, 882
Cfr13I GGNCC 8 cut(s) 187, 198, 244, 253, 898, 911, 945, 979
CseI GACGC 1 cut(s) 479
Csp6I GTAC 2 cut(s) 301, 610
CviAII CATG 8 cut(s) 524, 560, 619, 685, 822, 858, 949, 1007
CviQI GTAC 2 cut(s) 301, 610
DdeI CTNAG 4 cut(s) 22, 915, 927, 984
DpnI GATC 7 cut(s) 33, 215, 220, 642, 670, 753, 798
DpnII GATC 7 cut(s) 31, 213, 218, 640, 668, 751, 796
DriI GACNNNNNGTC 2 cut(s) 292, 943
EaeI YGGCCR 3 cut(s) 60, 306, 676
Eam1104I CTCTTC 1 cut(s) 866
Eam1105I GACNNNNNGTC 2 cut(s) 292, 943
EarI CTCTTC 1 cut(s) 866
Eco24I GRGCYC 1 cut(s) 178
Eco47I GGWCC 5 cut(s) 187, 198, 253, 911, 945
Eco57I CTGAAG 1 cut(s) 335
Eco88I CYCGRG 1 cut(s) 171
Eco91I GGTNACC 1 cut(s) 515
EcoO65I GGTNACC 1 cut(s) 515
EcoRII CCWGG 1 cut(s) 303
EcoT22I ATGCAT 2 cut(s) 586, 827
EcoT38I GRGCYC 1 cut(s) 178
FaeI CATG 8 cut(s) 527, 563, 622, 688, 825, 861, 952, 1010
FaqI GGGAC 3 cut(s) 211, 920, 976
FatI CATG 8 cut(s) 523, 559, 618, 684, 821, 857, 948, 1006
FauI CCCGC 1 cut(s) 200
FbaI TGATCA 1 cut(s) 751
Fnu4HI GCNGC 5 cut(s) 72, 272, 348, 735, 771
FokI GGATG 1 cut(s) 571
FriOI GRGCYC 1 cut(s) 178
Fsp4HI GCNGC 5 cut(s) 72, 272, 348, 735, 771
FspBI CTAG 1 cut(s) 605
GlaI GCGC 2 cut(s) 474, 881
GluI GCNGC 5 cut(s) 72, 272, 348, 735, 771
GsuI CTGGAG 2 cut(s) 20, 747
HaeIII GGCC 6 cut(s) 62, 245, 308, 678, 900, 980
HapII CCGG 6 cut(s) 102, 282, 321, 510, 943, 996
HgaI GACGC 1 cut(s) 479
HhaI GCGC 2 cut(s) 475, 882
Hin1I GRCGYC 1 cut(s) 939
Hin1II CATG 8 cut(s) 527, 563, 622, 688, 825, 861, 952, 1010
Hin6I GCGC 2 cut(s) 473, 880
HinP1I GCGC 2 cut(s) 473, 880
HincII GTYRAC 1 cut(s) 937
HindII GTYRAC 1 cut(s) 937
HinfI GANTC 4 cut(s) 80, 224, 563, 964
HpaII CCGG 6 cut(s) 102, 282, 321, 510, 943, 996
HphI GGTGA 4 cut(s) 43, 487, 527, 1010
Hpy166II GTNNAC 2 cut(s) 301, 937
Hpy188III TCNNGA 5 cut(s) 37, 605, 638, 905, 968
Hpy8I GTNNAC 2 cut(s) 301, 937
Hpy99I CGWCG 2 cut(s) 32, 329
HpyAV CCTTC 3 cut(s) 361, 386, 623
HpyCH4IV ACGT 2 cut(s) 657, 939
HpyCH4V TGCA 4 cut(s) 584, 728, 791, 825
HpyF10VI GCNNNNNNNGC 5 cut(s) 68, 336, 481, 490, 734
HpyF3I CTNAG 4 cut(s) 22, 915, 927, 984
HpySE526I ACGT 2 cut(s) 657, 939
Hsp92I GRCGYC 1 cut(s) 939
Hsp92II CATG 8 cut(s) 527, 563, 622, 688, 825, 861, 952, 1010
HspAI GCGC 2 cut(s) 473, 880
Ksp22I TGATCA 1 cut(s) 751
Kzo9I GATC 7 cut(s) 31, 213, 218, 640, 668, 751, 796
LguI GCTCTTC 1 cut(s) 866
LmnI GCTCC 9 cut(s) 4, 104, 110, 137, 158, 284, 370, 384, 433
Lsp1109I GCAGC 2 cut(s) 83, 721
LweI GCATC 4 cut(s) 51, 593, 737, 834
MaeI CTAG 1 cut(s) 605
MaeII ACGT 2 cut(s) 657, 939
MaeIII GTNAC 1 cut(s) 515
MalI GATC 7 cut(s) 33, 215, 220, 642, 670, 753, 798
MbiI CCGCTC 1 cut(s) 271
MboI GATC 7 cut(s) 31, 213, 218, 640, 668, 751, 796
MboII GAAGA 4 cut(s) 810, 883, 898, 901
MflI RGATCY 1 cut(s) 213
MhlI GDGCHC 3 cut(s) 134, 178, 438
MlsI TGGCCA 1 cut(s) 678
MluCI AATT 5 cut(s) 260, 425, 627, 744, 835
MluNI TGGCCA 1 cut(s) 678
MlyI GAGTC 3 cut(s) 233, 572, 958
MmeI TCCRAC 3 cut(s) 362, 411, 556
Mox20I TGGCCA 1 cut(s) 678
Mph1103I ATGCAT 2 cut(s) 586, 827
MroXI GAANNNNTTC 1 cut(s) 554
MscI TGGCCA 1 cut(s) 678
MslI CAYNNNNRTG 3 cut(s) 712, 820, 1011
Msp20I TGGCCA 1 cut(s) 678
MspA1I CMGCKG 2 cut(s) 195, 241
MspI CCGG 6 cut(s) 102, 282, 321, 510, 943, 996
MspR9I CCNGG 2 cut(s) 305, 510
MvaI CCWGG 1 cut(s) 305
MvnI CGCG 2 cut(s) 347, 473
MwoI GCNNNNNNNGC 5 cut(s) 68, 336, 481, 490, 734
NciI CCSGG 1 cut(s) 510
NdeII GATC 7 cut(s) 31, 213, 218, 640, 668, 751, 796
NlaIII CATG 8 cut(s) 527, 563, 622, 688, 825, 861, 952, 1010
NlaIV GGNNCC 6 cut(s) 6, 106, 154, 189, 280, 981
NmeAIII GCCGAG 4 cut(s) 119, 129, 255, 334
NmuCI GTSAC 1 cut(s) 515
NsiI ATGCAT 2 cut(s) 586, 827
PciSI GCTCTTC 1 cut(s) 866
PcsI WCGNNNNNNNCGW 1 cut(s) 282
PdmI GAANNNNTTC 1 cut(s) 554
PfeI GAWTC 1 cut(s) 80
PkrI GCNGC 5 cut(s) 73, 273, 349, 736, 772
PleI GAGTC 3 cut(s) 232, 571, 958
PpsI GAGTC 3 cut(s) 232, 571, 958
Psp1406I AACGTT 1 cut(s) 657
Psp6I CCWGG 1 cut(s) 303
PspEI GGTNACC 1 cut(s) 515
PspGI CCWGG 1 cut(s) 303
PspN4I GGNNCC 6 cut(s) 6, 106, 154, 189, 280, 981
PspPI GGNCC 8 cut(s) 187, 198, 244, 253, 898, 911, 945, 979
PsuI RGATCY 1 cut(s) 213
PvuII CAGCTG 1 cut(s) 241
RsaI GTAC 2 cut(s) 302, 611
RsaNI GTAC 2 cut(s) 301, 610
RseI CAYNNNNRTG 3 cut(s) 712, 820, 1011
SapI GCTCTTC 1 cut(s) 866
SatI GCNGC 5 cut(s) 72, 272, 348, 735, 771
Sau3AI GATC 7 cut(s) 31, 213, 218, 640, 668, 751, 796
Sau96I GGNCC 8 cut(s) 187, 198, 244, 253, 898, 911, 945, 979
SchI GAGTC 3 cut(s) 233, 572, 958
ScrFI CCNGG 2 cut(s) 305, 510
SduI GDGCHC 3 cut(s) 134, 178, 438
SfaNI GCATC 4 cut(s) 51, 593, 737, 834
SinI GGWCC 5 cut(s) 187, 198, 253, 911, 945
SmiMI CAYNNNNRTG 3 cut(s) 712, 820, 1011
SmlI CTYRAG 1 cut(s) 644
SmoI CTYRAG 1 cut(s) 644
Sse9I AATT 5 cut(s) 260, 425, 627, 744, 835
SsiI CCGC 9 cut(s) 69, 123, 193, 201, 271, 347, 513, 771, 1016
SspMI CTAG 1 cut(s) 605
StyD4I CCNGG 2 cut(s) 303, 508
TaiI ACGT 2 cut(s) 660, 942
TaqI TCGA 1 cut(s) 667
TasI AATT 5 cut(s) 260, 425, 627, 744, 835
TauI GCSGC 3 cut(s) 274, 350, 773
TfiI GAWTC 1 cut(s) 80
TseFI GTSAC 1 cut(s) 515
TseI GCWGC 2 cut(s) 71, 734
Tsp45I GTSAC 1 cut(s) 515
TspDTI ATGAA 1 cut(s) 810
TspGWI ACGGA 1 cut(s) 924
VpaK11BI GGWCC 5 cut(s) 187, 198, 253, 911, 945
XapI RAATTY 1 cut(s) 260
XbaI TCTAGA 1 cut(s) 604
XmnI GAANNNNTTC 1 cut(s) 554
XspI CTAG 1 cut(s) 605
ZraI GACGTC 1 cut(s) 940
Zsp2I ATGCAT 2 cut(s) 586, 827
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.