Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0011429

Physical Location & Seq

Genomic Coordinates Reverse (-)

13745636 .. 13749235

Gene Structure 3600 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGATGACCTCATGGACGAGGACGGAGCCGTCGACGCCGAGCCCTCCGCCTCCCCCAGGGCACCACTCCCCAAGCTCAAGTCCGCAATCACCGGCGTCGGAGCGGCGTCTGCCGCCCCTAAGAAGACCAAAGGTCGCGGATTCCGTGAAGATCTCAATGCCGACCGTAACAGCCGCCTCACTGCATCCCACTTCGACTCTCTCAACTCCTCCAACGGCCTTGAACCCCAACGATCCGTTGAGGGATGGATTATTCTGGTCACTGGGGTCCATGAAGAGGCCCAAGAGGATCGACCTACAAGATGCATTTGGTGAATATGGGGAGATAAAAAATTTGCATTTAAATCTTGATCGCCGCACCGGGTTTGTGAAGGGATATGCGCTGATTGAATATGAGAGTTTTAAAGAGGCAAAAACTGCGATAGACAAAATGAACGGAGAACCGTTACTTACACAAGTTTTAACTGTTGATTGGGCCTTCAGCAATGGATCGTTCATTGATGGATCCAGGAAGAACTCAAGACCACTAAGAGAACGTCGCTCAAGGAGTCCTAGGAGGAGATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000184 GO:0000381 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016070 GO:0016071 GO:0016604 GO:0019219 GO:0019222 GO:0019439 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034655 GO:0035145 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0046700 GO:0048024 GO:0048518 GO:0048519 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1903311

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

189

Amino Acids

21.08

Weight (kDa)

10.34

Isoelectric Point (pI)

77.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	98 - 151	3.8e-11	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51510
fragaria_vesca	FvH4_3g28440
malus_domestica	MD03G1171900.v1.1 MD11G1189700.v1.1 MD12G1080200.v1.1
prunus_persica	Prupe.4G255000_v2.0.a1 Prupe.7G055300_v2.0.a1
pyrus_communis	pycom03g12900 pycom11g16600 pycom12g06680
rosa_chinensis	RchiOBHm_Chr5g0053031
rosa_laevigata	RLG00000034777
rosa_multiflora	Rmu_sc0006573.1_g000011
rosa_roxburghii	Rroxscaffold_1G00028840
rosa_rugosa	Rorug05G0268700
rosa_samantha	Rh5AG340900 Rh5BG351500 Rh5CG377700 Rh5DG367900
rosa_wichuraiana	Rw5G032140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	28
AccB1I	GGYRCC	1 cut(s)	60
AccBSI	CCGCTC	1 cut(s)	103
AccI	GTMKAC	1 cut(s)	32
AccII	CGCG	1 cut(s)	137
AciI	CCGC	7 cut(s)	47, 83, 103, 113, 137, 174, 355
AclWI	GGATC	5 cut(s)	227, 296, 496, 498, 511
AcsI	RAATTY	1 cut(s)	331
AcuI	CTGAAG	1 cut(s)	463
AcyI	GRCGYC	3 cut(s)	35, 95, 106
AfiI	CCNNNNNNNGG	2 cut(s)	56, 276
AgsI	TTSAA	2 cut(s)	223, 389
AhdI	GACNNNNNGTC	1 cut(s)	131
AjnI	CCWGG	2 cut(s)	55, 506
AluBI	AGCT	1 cut(s)	75
AluI	AGCT	1 cut(s)	75
AlwI	GGATC	5 cut(s)	227, 296, 496, 498, 511
AoxI	GGCC	3 cut(s)	216, 278, 474
ApoI	RAATTY	1 cut(s)	331
AspA2I	CCTAGG	1 cut(s)	551
AspLEI	GCGC	1 cut(s)	382
AspS9I	GGNCC	3 cut(s)	267, 279, 474
AsuC2I	CCSGG	1 cut(s)	361
AsuHPI	GGTGA	2 cut(s)	81, 323
AvaII	GGWCC	1 cut(s)	267
AvrII	CCTAGG	1 cut(s)	551
BaeGI	GKGCMC	1 cut(s)	63
BamHI	GGATCC	1 cut(s)	503
BanI	GGYRCC	1 cut(s)	60
BanII	GRGCYC	1 cut(s)	44
BbsI	GAAGAC	1 cut(s)	130
BccI	CCATC	2 cut(s)	239, 494
BceAI	ACGGC	2 cut(s)	13, 231
BciT130I	CCWGG	2 cut(s)	57, 508
BcnI	CCSGG	1 cut(s)	361
BfaI	CTAG	1 cut(s)	552
BglII	AGATCT	1 cut(s)	150
BisI	GCNGC	4 cut(s)	104, 113, 174, 355
BlnI	CCTAGG	1 cut(s)	551
BlsI	GCNGC	4 cut(s)	105, 114, 175, 356
Bme1390I	CCNGG	3 cut(s)	57, 361, 508
Bme18I	GGWCC	1 cut(s)	267
BmeRI	GACNNNNNGTC	1 cut(s)	131
BmgT120I	GGNCC	3 cut(s)	267, 279, 474
BmiI	GGNNCC	4 cut(s)	27, 62, 268, 505
BmrFI	CCNGG	3 cut(s)	57, 361, 508
BmrI	ACTGGG	1 cut(s)	272
BmsI	GCATC	2 cut(s)	193, 292
BmuI	ACTGGG	1 cut(s)	272
BpiI	GAAGAC	1 cut(s)	130
BpuEI	CTTGAG	3 cut(s)	61, 502, 526
BpuMI	CCSGG	1 cut(s)	361
BsaHI	GRCGYC	3 cut(s)	35, 95, 106
BsaJI	CCNNGG	3 cut(s)	55, 56, 551
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 276
Bse118I	RCCGGY	1 cut(s)	91
Bse1I	ACTGG	1 cut(s)	267
Bse3DI	GCAATG	1 cut(s)	490
BseBI	CCWGG	2 cut(s)	57, 508
BseDI	CCNNGG	3 cut(s)	55, 56, 551
BseGI	GGATG	2 cut(s)	184, 250
BseLI	CCNNNNNNNGG	2 cut(s)	56, 276
BseMI	GCAATG	1 cut(s)	490
BseNI	ACTGG	1 cut(s)	267
BseRI	GAGGAG	1 cut(s)	198
BseSI	GKGCMC	1 cut(s)	63
Bsh1236I	CGCG	1 cut(s)	137
Bsh1285I	CGRYCG	1 cut(s)	165
BshFI	GGCC	3 cut(s)	218, 280, 476
BshNI	GGYRCC	1 cut(s)	60
BsiEI	CGRYCG	1 cut(s)	165
BsiSI	CCGG	2 cut(s)	92, 360
BslI	CCNNNNNNNGG	2 cut(s)	56, 276
BsnI	GGCC	3 cut(s)	218, 280, 476
Bsp1286I	GDGCHC	2 cut(s)	44, 63
Bsp143I	GATC	6 cut(s)	150, 232, 288, 349, 488, 503
BspACI	CCGC	7 cut(s)	47, 83, 103, 113, 137, 174, 355
BspANI	GGCC	3 cut(s)	218, 280, 476
BspFNI	CGCG	1 cut(s)	137
BspLI	GGNNCC	4 cut(s)	27, 62, 268, 505
BspPI	GGATC	5 cut(s)	227, 296, 496, 498, 511
BspT107I	GGYRCC	1 cut(s)	60
BsrBI	CCGCTC	1 cut(s)	103
BsrDI	GCAATG	1 cut(s)	490
BsrFI	RCCGGY	1 cut(s)	91
BsrI	ACTGG	1 cut(s)	267
BssAI	RCCGGY	1 cut(s)	91
BssECI	CCNNGG	3 cut(s)	55, 56, 551
BssMI	GATC	6 cut(s)	150, 232, 288, 349, 488, 503
BssNI	GRCGYC	3 cut(s)	35, 95, 106
BssT1I	CCWWGG	1 cut(s)	551
Bst2UI	CCWGG	2 cut(s)	57, 508
Bst4CI	ACNGT	3 cut(s)	166, 444, 466
Bst6I	CTCTTC	1 cut(s)	269
BstACI	GRCGYC	3 cut(s)	35, 95, 106
BstAPI	GCANNNNNTGC	1 cut(s)	416
BstDEI	CTNAG	2 cut(s)	119, 527
BstENI	CCTNNNNNAGG	1 cut(s)	54
BstF5I	GGATG	2 cut(s)	184, 250
BstFNI	CGCG	1 cut(s)	137
BstHHI	GCGC	1 cut(s)	382
BstKTI	GATC	6 cut(s)	153, 235, 291, 352, 491, 506
BstMBI	GATC	6 cut(s)	150, 232, 288, 349, 488, 503
BstMCI	CGRYCG	1 cut(s)	165
BstMWI	GCNNNNNNNGC	4 cut(s)	34, 109, 112, 416
BstNI	CCWGG	2 cut(s)	57, 508
BstSCI	CCNGG	3 cut(s)	55, 359, 506
BstSLI	GKGCMC	1 cut(s)	63
BstUI	CGCG	1 cut(s)	137
BstV2I	GAAGAC	1 cut(s)	130
BstX2I	RGATCY	2 cut(s)	150, 503
BstYI	RGATCY	2 cut(s)	150, 503
BsuRI	GGCC	3 cut(s)	218, 280, 476
BtsCI	GGATG	2 cut(s)	184, 250
BtsI	GCAGTG	1 cut(s)	179
BtsIMutI	CAGTG	2 cut(s)	179, 260
CfoI	GCGC	1 cut(s)	382
Cfr10I	RCCGGY	1 cut(s)	91
Cfr13I	GGNCC	3 cut(s)	267, 279, 474
CseI	GACGC	3 cut(s)	43, 84, 95
CviAII	CATG	2 cut(s)	12, 271
CviJI	RGCY	7 cut(s)	28, 42, 75, 173, 218, 280, 476
CviKI_1	RGCY	7 cut(s)	28, 42, 75, 173, 218, 280, 476
DdeI	CTNAG	2 cut(s)	119, 527
DpnI	GATC	6 cut(s)	152, 234, 290, 351, 490, 505
DpnII	GATC	6 cut(s)	150, 232, 288, 349, 488, 503
DraI	TTTAAA	2 cut(s)	342, 403
DrdI	GACNNNNNNGTC	1 cut(s)	28
DriI	GACNNNNNGTC	1 cut(s)	131
DseDI	GACNNNNNNGTC	1 cut(s)	28
Eam1104I	CTCTTC	1 cut(s)	269
Eam1105I	GACNNNNNGTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	269
EciI	GGCGGA	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	551
Eco24I	GRGCYC	1 cut(s)	44
Eco47I	GGWCC	1 cut(s)	267
Eco57I	CTGAAG	1 cut(s)	463
EcoNI	CCTNNNNNAGG	1 cut(s)	54
EcoRII	CCWGG	2 cut(s)	55, 506
EcoT14I	CCWWGG	1 cut(s)	551
EcoT22I	ATGCAT	1 cut(s)	307
EcoT38I	GRGCYC	1 cut(s)	44
ErhI	CCWWGG	1 cut(s)	551
FaeI	CATG	2 cut(s)	15, 274
FaiI	YATR	5 cut(s)	13, 272, 318, 378, 393
FatI	CATG	2 cut(s)	11, 270
FblI	GTMKAC	1 cut(s)	32
Fnu4HI	GCNGC	4 cut(s)	104, 113, 174, 355
FokI	GGATG	2 cut(s)	171, 257
FriOI	GRGCYC	1 cut(s)	44
Fsp4HI	GCNGC	4 cut(s)	104, 113, 174, 355
FspBI	CTAG	1 cut(s)	552
GlaI	GCGC	1 cut(s)	381
GluI	GCNGC	4 cut(s)	104, 113, 174, 355
HaeIII	GGCC	3 cut(s)	218, 280, 476
HapII	CCGG	2 cut(s)	92, 360
HgaI	GACGC	3 cut(s)	43, 84, 95
HhaI	GCGC	1 cut(s)	382
Hin1I	GRCGYC	3 cut(s)	35, 95, 106
Hin1II	CATG	2 cut(s)	15, 274
Hin6I	GCGC	1 cut(s)	380
HinP1I	GCGC	1 cut(s)	380
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HinfI	GANTC	3 cut(s)	140, 196, 547
HpaII	CCGG	2 cut(s)	92, 360
HphI	GGTGA	2 cut(s)	81, 323
Hpy166II	GTNNAC	1 cut(s)	33
Hpy188I	TCNGA	1 cut(s)	100
Hpy188III	TCNNGA	2 cut(s)	347, 519
Hpy8I	GTNNAC	1 cut(s)	33
Hpy99I	CGWCG	4 cut(s)	34, 37, 100, 540
HpyAV	CCTTC	2 cut(s)	364, 487
HpyCH4III	ACNGT	3 cut(s)	166, 444, 466
HpyCH4IV	ACGT	1 cut(s)	535
HpyCH4V	TGCA	3 cut(s)	184, 305, 337
HpyF10VI	GCNNNNNNNGC	4 cut(s)	34, 109, 112, 416
HpyF3I	CTNAG	2 cut(s)	119, 527
HpySE526I	ACGT	1 cut(s)	535
Hsp92I	GRCGYC	3 cut(s)	35, 95, 106
Hsp92II	CATG	2 cut(s)	15, 274
HspAI	GCGC	1 cut(s)	380
Kzo9I	GATC	6 cut(s)	150, 232, 288, 349, 488, 503
LmnI	GCTCC	2 cut(s)	25, 100
LpnPI	CCDG	8 cut(s)	42, 69, 105, 241, 248, 373, 493, 520
LweI	GCATC	2 cut(s)	193, 292
MaeI	CTAG	1 cut(s)	552
MaeII	ACGT	1 cut(s)	535
MaeIII	GTNAC	3 cut(s)	166, 258, 444
MalI	GATC	6 cut(s)	152, 234, 290, 351, 490, 505
MbiI	CCGCTC	1 cut(s)	103
MboI	GATC	6 cut(s)	150, 232, 288, 349, 488, 503
MboII	GAAGA	4 cut(s)	135, 160, 286, 523
MflI	RGATCY	2 cut(s)	150, 503
MhlI	GDGCHC	2 cut(s)	44, 63
MluCI	AATT	1 cut(s)	331
MlyI	GAGTC	2 cut(s)	190, 556
MmeI	TCCRAC	2 cut(s)	78, 236
Mph1103I	ATGCAT	1 cut(s)	307
MseI	TTAA	3 cut(s)	341, 402, 461
MspI	CCGG	2 cut(s)	92, 360
MspR9I	CCNGG	3 cut(s)	57, 361, 508
MvaI	CCWGG	2 cut(s)	57, 508
MvnI	CGCG	1 cut(s)	137
MwoI	GCNNNNNNNGC	4 cut(s)	34, 109, 112, 416
NciI	CCSGG	1 cut(s)	361
NdeII	GATC	6 cut(s)	150, 232, 288, 349, 488, 503
NlaIII	CATG	2 cut(s)	15, 274
NlaIV	GGNNCC	4 cut(s)	27, 62, 268, 505
NmeAIII	GCCGAG	1 cut(s)	63
NmuCI	GTSAC	1 cut(s)	258
NsiI	ATGCAT	1 cut(s)	307
PasI	CCCWGGG	1 cut(s)	56
PcsI	WCGNNNNNNNCGW	2 cut(s)	29, 141
PfeI	GAWTC	1 cut(s)	140
PfoI	TCCNGGA	1 cut(s)	506
PkrI	GCNGC	4 cut(s)	105, 114, 175, 356
PleI	GAGTC	2 cut(s)	190, 555
PpsI	GAGTC	2 cut(s)	190, 555
Psp6I	CCWGG	2 cut(s)	55, 506
PspGI	CCWGG	2 cut(s)	55, 506
PspN4I	GGNNCC	4 cut(s)	27, 62, 268, 505
PspPI	GGNCC	3 cut(s)	267, 279, 474
PsuI	RGATCY	2 cut(s)	150, 503
SalI	GTCGAC	1 cut(s)	31
SaqAI	TTAA	3 cut(s)	341, 402, 461
SatI	GCNGC	4 cut(s)	104, 113, 174, 355
Sau3AI	GATC	6 cut(s)	150, 232, 288, 349, 488, 503
Sau96I	GGNCC	3 cut(s)	267, 279, 474
SchI	GAGTC	2 cut(s)	190, 556
ScrFI	CCNGG	3 cut(s)	57, 361, 508
SduI	GDGCHC	2 cut(s)	44, 63
SetI	ASST	5 cut(s)	11, 77, 135, 297, 538
SfaNI	GCATC	2 cut(s)	193, 292
SgrAI	CRCCGGYG	1 cut(s)	91
SgrDI	CGTCGACG	1 cut(s)	31
SinI	GGWCC	1 cut(s)	267
SmiI	ATTTAAAT	1 cut(s)	342
SmlI	CTYRAG	3 cut(s)	76, 517, 541
SmoI	CTYRAG	3 cut(s)	76, 517, 541
Sse9I	AATT	1 cut(s)	331
SsiI	CCGC	7 cut(s)	47, 83, 103, 113, 137, 174, 355
SspMI	CTAG	1 cut(s)	552
StyD4I	CCNGG	3 cut(s)	55, 359, 506
StyI	CCWWGG	1 cut(s)	551
SwaI	ATTTAAAT	1 cut(s)	342
TaaI	ACNGT	3 cut(s)	166, 444, 466
TaiI	ACGT	1 cut(s)	538
TaqI	TCGA	3 cut(s)	32, 194, 291
TasI	AATT	1 cut(s)	331
TauI	GCSGC	4 cut(s)	106, 115, 176, 357
TfiI	GAWTC	1 cut(s)	140
Tru1I	TTAA	3 cut(s)	341, 402, 461
Tru9I	TTAA	3 cut(s)	341, 402, 461
TscAI	CASTG	2 cut(s)	186, 267
TseFI	GTSAC	1 cut(s)	258
Tsp45I	GTSAC	1 cut(s)	258
TspDTI	ATGAA	3 cut(s)	287, 446, 484
TspGWI	ACGGA	4 cut(s)	38, 133, 225, 450
TspRI	CASTG	2 cut(s)	186, 267
VpaK11BI	GGWCC	1 cut(s)	267
XagI	CCTNNNNNAGG	1 cut(s)	54
XapI	RAATTY	1 cut(s)	331
XmaJI	CCTAGG	1 cut(s)	551
XmiI	GTMKAC	1 cut(s)	32
XspI	CTAG	1 cut(s)	552
Zsp2I	ATGCAT	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.