pycom03g13930

30S ribosomal protein S10

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0010010
Physical Location & Seq
Forward (+)
15085115 .. 15087602
2488 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 909 bp
ATGTTTGGAAGTGCTTTTAAAAAAACAAGCACTTTTAAATCACCTGAAGTGTTTTTGGCCATGTTTTGGCAGAAAAAAGTAGGAGTGCTTATAGGTGGAAAAAATTACTTTGAAGTGCTTGTTGAAAGAAGTTGTGTGCTTCTTTTACAAACCCAAACTACAAACCACGATAAAAACAAAAACAAAAAAATAAAAATATTTTGGATAATTCTACAATCTACAGGCAGCGTGAGCAAAACAGAGCCCTTCTTCTTTACACGGAGGGAAAAAGAGAGAGAGAGAGAGAGAGAGAGACCGAGTTCCATTTCAATGGCAGTTTCTTCCATGTCTTCAATCCTAATTCCTTCACTTCCTCTCTCCAATTCTTCTGCATTTCCGACTTCCAAGCCAAAGCTTTCTTCTTTCGCTTTGCCCTCGGCCAACAATGCCTTAAAGCTCAGAGCTTCCAGACCCTCACAGTCATCCACTAGGGTTTATGCCGCTCCTGAAGTCTTGGAGTCCCAGGAAACCCTAATCCCACCTCCAGAAACCCTCGAGGTTGGAAGTTCTGAGACCCCGAGTACTTCATCACTCAGTATTGGTGGAGATGGAGATAAGGCCTCACCGAAGCAGAAAATCAGGATTAAACTGAGGTCTTACTTTGTGCCATTGATAGAAGATTCCTGCAAGCAGATAATGGATGCTGCTAGGAACACAAATGCAAAAACAATGGGTCCTGTACCCTTGCCAACTAAAAAGCGAATCTACTGTGTTCTCAAATCTCCCCATGTCCACAAGGATGCAAGGTTCCATTTTGAGATTCGTACCCACCAACGCCTCATTGATATTCTATACCCAACTGCACAAACAATAGATTCCTTAATGCAACTTGACCTTCCTGCTGGAGTTGATGTGGAGGTCAAACTGTGA

Protein Analysis

303

Amino Acids

33.76

Weight (kDa)

9.8

Isoelectric Point (pI)

57.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S10 PF00338 207 - 301 3.6e-33 Ribosomal protein S10p/S20e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010010)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13120 AT3G13120 AT3G13120
fragaria_vesca FvH4_3g29500
malus_domestica MD03G1187000.v1.1 MD11G1202000.v1.1
prunus_persica Prupe.4G239600_v2.0.a1
pyrus_communis pycom03g13930 pycom11g17450
rosa_chinensis RchiOBHm_Chr5g0054381
rosa_laevigata RLG00000034928
rosa_multiflora Rmu_sc0005705.1_g000022
rosa_roxburghii Rroxscaffold_1G00026490
rosa_rugosa Rorug05G0286000 Rorug05G0286000
rosa_samantha Rh5AG356500 Rh5BG368100 Rh5CG391400 Rh5DG382300
rosa_wichuraiana Rw5G033490 Rw5G033660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 533
AccB7I CCANNNNNTGG 1 cut(s) 66
AccBSI CCGCTC 1 cut(s) 482
AciI CCGC 1 cut(s) 480
AcoI YGGCCR 2 cut(s) 57, 417
AcuI CTGAAG 2 cut(s) 66, 507
AfaI GTAC 3 cut(s) 562, 720, 805
AfiI CCNNNNNNNGG 1 cut(s) 66
AgsI TTSAA 4 cut(s) 113, 125, 309, 333
AjnI CCWGG 1 cut(s) 501
AjuI GAANNNNNNNTTGG 2 cut(s) 382, 414
AloI GAACNNNNNNTCC 2 cut(s) 770, 802
AluBI AGCT 3 cut(s) 394, 436, 443
AluI AGCT 3 cut(s) 394, 436, 443
Alw26I GTCTC 2 cut(s) 286, 545
Ama87I CYCGRG 2 cut(s) 533, 556
AoxI GGCC 3 cut(s) 57, 417, 597
ApeKI GCWGC 2 cut(s) 225, 683
AspS9I GGNCC 1 cut(s) 713
AsuHPI GGTGA 2 cut(s) 33, 594
AvaI CYCGRG 2 cut(s) 533, 556
AvaII GGWCC 1 cut(s) 713
BalI TGGCCA 1 cut(s) 59
BanII GRGCYC 1 cut(s) 246
BbsI GAAGAC 1 cut(s) 321
BbvI GCAGC 2 cut(s) 237, 670
BccI CCATC 1 cut(s) 581
BciT130I CCWGG 1 cut(s) 503
BcoDI GTCTC 2 cut(s) 286, 545
BfaI CTAG 2 cut(s) 468, 687
BfmI CTRYAG 1 cut(s) 219
BisI GCNGC 3 cut(s) 226, 480, 684
BlsI GCNGC 3 cut(s) 227, 481, 685
BmcAI AGTACT 1 cut(s) 562
Bme1390I CCNGG 1 cut(s) 503
Bme18I GGWCC 1 cut(s) 713
BmeT110I CYCGRG 2 cut(s) 533, 556
BmgT120I GGNCC 1 cut(s) 713
BmiI GGNNCC 2 cut(s) 714, 788
BmrFI CCNGG 1 cut(s) 503
BmsI GCATC 2 cut(s) 670, 769
BpiI GAAGAC 1 cut(s) 321
BpmI CTGGAG 2 cut(s) 507, 903
BsaI GGTCTC 2 cut(s) 286, 545
BsaJI CCNNGG 2 cut(s) 414, 501
BsaXI ACNNNNNCTCC 2 cut(s) 876, 906
Bsc4I CCNNNNNNNGG 1 cut(s) 66
BseBI CCWGG 1 cut(s) 503
BseDI CCNNGG 2 cut(s) 414, 501
BseGI GGATG 3 cut(s) 461, 685, 784
BseLI CCNNNNNNNGG 1 cut(s) 66
BseMII CTCAG 4 cut(s) 451, 540, 586, 620
BseXI GCAGC 2 cut(s) 237, 670
BsgI GTGCAG 1 cut(s) 825
BshFI GGCC 3 cut(s) 59, 419, 599
BsiHKCI CYCGRG 2 cut(s) 533, 556
BslFI GGGAC 1 cut(s) 484
BslI CCNNNNNNNGG 1 cut(s) 66
BsmAI GTCTC 2 cut(s) 286, 545
BsmFI GGGAC 1 cut(s) 484
BsnI GGCC 3 cut(s) 59, 419, 599
Bso31I GGTCTC 2 cut(s) 286, 545
BsoBI CYCGRG 2 cut(s) 533, 556
Bsp1286I GDGCHC 1 cut(s) 246
BspACI CCGC 1 cut(s) 480
BspANI GGCC 3 cut(s) 59, 419, 599
BspCNI CTCAG 4 cut(s) 450, 541, 585, 621
BspLI GGNNCC 2 cut(s) 714, 788
BspTNI GGTCTC 2 cut(s) 286, 545
BsrBI CCGCTC 1 cut(s) 482
BssECI CCNNGG 2 cut(s) 414, 501
Bst2UI CCWGG 1 cut(s) 503
Bst4CI ACNGT 3 cut(s) 459, 749, 906
BstC8I GCNNGC 1 cut(s) 668
BstDEI CTNAG 4 cut(s) 437, 549, 572, 629
BstF5I GGATG 3 cut(s) 461, 685, 784
BstMAI GTCTC 2 cut(s) 286, 545
BstMWI GCNNNNNNNGC 2 cut(s) 231, 425
BstNI CCWGG 1 cut(s) 503
BstSCI CCNGG 1 cut(s) 501
BstSFI CTRYAG 1 cut(s) 219
BstV1I GCAGC 2 cut(s) 237, 670
BstV2I GAAGAC 1 cut(s) 321
BstXI CCANNNNNNTGG 1 cut(s) 310
BsuRI GGCC 3 cut(s) 59, 419, 599
BtsCI GGATG 3 cut(s) 461, 685, 784
Cac8I GCNNGC 1 cut(s) 668
Cfr13I GGNCC 1 cut(s) 713
Csp6I GTAC 3 cut(s) 561, 719, 804
CviAII CATG 3 cut(s) 61, 325, 767
CviJI RGCY 8 cut(s) 59, 244, 388, 394, 419, 436, 443, 599
CviKI_1 RGCY 8 cut(s) 59, 244, 388, 394, 419, 436, 443, 599
CviQI GTAC 3 cut(s) 561, 719, 804
DdeI CTNAG 4 cut(s) 437, 549, 572, 629
DraI TTTAAA 2 cut(s) 19, 37
EaeI YGGCCR 2 cut(s) 57, 417
Eco147I AGGCCT 1 cut(s) 599
Eco24I GRGCYC 1 cut(s) 246
Eco31I GGTCTC 2 cut(s) 286, 545
Eco47I GGWCC 1 cut(s) 713
Eco57I CTGAAG 2 cut(s) 66, 507
Eco88I CYCGRG 2 cut(s) 533, 556
EcoO109I RGGNCCY 1 cut(s) 713
EcoRII CCWGG 1 cut(s) 501
EcoT38I GRGCYC 1 cut(s) 246
FaeI CATG 3 cut(s) 64, 328, 770
FaiI YATR 6 cut(s) 62, 92, 326, 477, 768, 832
FaqI GGGAC 1 cut(s) 484
FatI CATG 3 cut(s) 60, 324, 766
Fnu4HI GCNGC 3 cut(s) 226, 480, 684
FokI GGATG 3 cut(s) 448, 692, 791
FriOI GRGCYC 1 cut(s) 246
Fsp4HI GCNGC 3 cut(s) 226, 480, 684
FspBI CTAG 2 cut(s) 468, 687
GluI GCNGC 3 cut(s) 226, 480, 684
GsuI CTGGAG 2 cut(s) 507, 903
HaeIII GGCC 3 cut(s) 59, 419, 599
Hin1II CATG 3 cut(s) 64, 328, 770
HindIII AAGCTT 1 cut(s) 392
HinfI GANTC 5 cut(s) 497, 659, 741, 799, 854
HphI GGTGA 2 cut(s) 33, 594
Hpy166II GTNNAC 1 cut(s) 772
Hpy188I TCNGA 3 cut(s) 378, 440, 550
Hpy188III TCNNGA 4 cut(s) 447, 485, 524, 619
Hpy8I GTNNAC 1 cut(s) 772
HpyAV CCTTC 3 cut(s) 256, 354, 884
HpyCH4III ACNGT 3 cut(s) 459, 749, 906
HpyCH4V TGCA 6 cut(s) 371, 666, 701, 782, 842, 865
HpyF10VI GCNNNNNNNGC 2 cut(s) 231, 425
HpyF3I CTNAG 4 cut(s) 437, 549, 572, 629
Hsp92II CATG 3 cut(s) 64, 328, 770
LmnI GCTCC 1 cut(s) 487
Lsp1109I GCAGC 2 cut(s) 237, 670
LweI GCATC 2 cut(s) 670, 769
MaeI CTAG 2 cut(s) 468, 687
MbiI CCGCTC 1 cut(s) 482
MboII GAAGA 6 cut(s) 241, 312, 321, 357, 390, 668
MhlI GDGCHC 1 cut(s) 246
MlsI TGGCCA 1 cut(s) 59
MluCI AATT 4 cut(s) 103, 207, 339, 361
MluNI TGGCCA 1 cut(s) 59
MlyI GAGTC 1 cut(s) 506
MmeI TCCRAC 2 cut(s) 401, 520
Mox20I TGGCCA 1 cut(s) 59
MscI TGGCCA 1 cut(s) 59
MseI TTAA 5 cut(s) 18, 36, 431, 624, 860
MslI CAYNNNNRTG 2 cut(s) 308, 777
Msp20I TGGCCA 1 cut(s) 59
MspR9I CCNGG 1 cut(s) 503
MvaI CCWGG 1 cut(s) 503
MwoI GCNNNNNNNGC 2 cut(s) 231, 425
NlaIII CATG 3 cut(s) 64, 328, 770
NlaIV GGNNCC 2 cut(s) 714, 788
NmeAIII GCCGAG 1 cut(s) 395
PaeR7I CTCGAG 1 cut(s) 533
PceI AGGCCT 1 cut(s) 599
PfeI GAWTC 4 cut(s) 659, 741, 799, 854
PflMI CCANNNNNTGG 1 cut(s) 66
PkrI GCNGC 3 cut(s) 227, 481, 685
PleI GAGTC 1 cut(s) 505
PpsI GAGTC 1 cut(s) 505
PpuMI RGGWCCY 1 cut(s) 713
Psp5II RGGWCCY 1 cut(s) 713
Psp6I CCWGG 1 cut(s) 501
PspGI CCWGG 1 cut(s) 501
PspN4I GGNNCC 2 cut(s) 714, 788
PspPI GGNCC 1 cut(s) 713
PspPPI RGGWCCY 1 cut(s) 713
PspXI VCTCGAGB 1 cut(s) 533
RsaI GTAC 3 cut(s) 562, 720, 805
RsaNI GTAC 3 cut(s) 561, 719, 804
RseI CAYNNNNRTG 2 cut(s) 308, 777
SaqAI TTAA 5 cut(s) 18, 36, 431, 624, 860
SatI GCNGC 3 cut(s) 226, 480, 684
Sau96I GGNCC 1 cut(s) 713
ScaI AGTACT 1 cut(s) 562
SchI GAGTC 1 cut(s) 506
ScrFI CCNGG 1 cut(s) 503
SduI GDGCHC 1 cut(s) 246
SfaNI GCATC 2 cut(s) 670, 769
SfcI CTRYAG 1 cut(s) 219
Sfr274I CTCGAG 1 cut(s) 533
SinI GGWCC 1 cut(s) 713
SlaI CTCGAG 1 cut(s) 533
SmiMI CAYNNNNRTG 2 cut(s) 308, 777
SmlI CTYRAG 1 cut(s) 533
SmoI CTYRAG 1 cut(s) 533
Sse9I AATT 4 cut(s) 103, 207, 339, 361
SseBI AGGCCT 1 cut(s) 599
SsiI CCGC 1 cut(s) 480
SspI AATATT 1 cut(s) 198
SspMI CTAG 2 cut(s) 468, 687
StuI AGGCCT 1 cut(s) 599
StyD4I CCNGG 1 cut(s) 501
TaaI ACNGT 3 cut(s) 459, 749, 906
TaqI TCGA 1 cut(s) 534
TaqII GACCGA 1 cut(s) 310
TasI AATT 4 cut(s) 103, 207, 339, 361
TatI WGTACW 1 cut(s) 560
TauI GCSGC 1 cut(s) 482
TfiI GAWTC 4 cut(s) 659, 741, 799, 854
Tru1I TTAA 5 cut(s) 18, 36, 431, 624, 860
Tru9I TTAA 5 cut(s) 18, 36, 431, 624, 860
TseI GCWGC 2 cut(s) 225, 683
TspDTI ATGAA 1 cut(s) 555
TspGWI ACGGA 1 cut(s) 274
Van91I CCANNNNNTGG 1 cut(s) 66
VpaK11BI GGWCC 1 cut(s) 713
XhoI CTCGAG 1 cut(s) 533
XspI CTAG 2 cut(s) 468, 687
ZrmI AGTACT 1 cut(s) 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.