pycom03g15650

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0016832
Physical Location & Seq
Reverse (-)
16864072 .. 16864483
412 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g15650.1

Sequence Viewer

Length: 360 bp
ATGCTTCAGTGGAAAAGTATAATTCCCTTTTCAATTTGTGTGCAGGAAAAAAATATTGAAGCTGAGAGACTTGTCCAAGAATTAAAGGAAAATGTGAAGAGAATGATATTGGCTCCAACGCCTTGTAAGCATTCAGATAAGCTGGACTTGGTCGATACGAGTCAGCGCTTAGGCGTCTCCTACCATTTTGAGGATGAGATTGATGAAGTTTTGCAGCAAATTCGCAAGGATTCTTATGACGGTAGTCACCAACACCAAGGGAGTGATGATGATCACAACCTTCATGCAGCTGCTCTATATTTTCGATTGCTTAGACAACAAGGTTATGATATATCATGTGGTAAGTCCCTCCCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

120

Amino Acids

13.74

Weight (kDa)

5.61

Isoelectric Point (pI)

50.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 17 - 113 4.8e-26 Terpene synthase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016832)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g27941
prunus_persica Prupe.4G238800_v2.0.a1
pyrus_communis pycom03g15650 pycom12g15550 pycom12g15650
rosa_chinensis RchiOBHm_Chr4g0399341
rosa_laevigata RLG00000035298
rosa_roxburghii Rroxscaffold_5G00344270
rosa_rugosa Rorug01G0225900 Rorug04G0016800
rosa_samantha Rh1AG240000 Rh5BG405500 Rh6AG030200 Rh7CG421600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 219
AcyI GRCGYC 1 cut(s) 174
AfeI AGCGCT 1 cut(s) 167
AfiI CCNNNNNNNGG 1 cut(s) 190
AgsI TTSAA 2 cut(s) 33, 59
AluBI AGCT 3 cut(s) 62, 142, 290
AluI AGCT 3 cut(s) 62, 142, 290
Alw26I GTCTC 2 cut(s) 61, 181
Aor51HI AGCGCT 1 cut(s) 167
ApeKI GCWGC 3 cut(s) 214, 287, 290
ApoI RAATTY 1 cut(s) 219
AspLEI GCGC 1 cut(s) 168
AsuHPI GGTGA 1 cut(s) 239
BbvI GCAGC 3 cut(s) 226, 277, 299
BcgI CGANNNNNNTGC 2 cut(s) 203, 237
BclI TGATCA 1 cut(s) 271
BcoDI GTCTC 2 cut(s) 61, 181
BfoI RGCGCY 1 cut(s) 169
BisI GCNGC 3 cut(s) 215, 288, 291
BlsI GCNGC 3 cut(s) 216, 289, 292
BmiI GGNNCC 1 cut(s) 114
BoxI GACNNNNGTC 1 cut(s) 243
Bpu10I CCTNAGC 1 cut(s) 169
BsaBI GATNNNNATC 1 cut(s) 270
BsaHI GRCGYC 1 cut(s) 174
BsaJI CCNNGG 1 cut(s) 256
Bsc4I CCNNNNNNNGG 1 cut(s) 190
Bse8I GATNNNNATC 1 cut(s) 270
BseDI CCNNGG 1 cut(s) 256
BseGI GGATG 1 cut(s) 199
BseJI GATNNNNATC 1 cut(s) 270
BseLI CCNNNNNNNGG 1 cut(s) 190
BseMII CTCAG 1 cut(s) 54
BseXI GCAGC 3 cut(s) 226, 277, 299
BsgI GTGCAG 1 cut(s) 62
BslFI GGGAC 1 cut(s) 331
BslI CCNNNNNNNGG 1 cut(s) 190
BsmAI GTCTC 2 cut(s) 61, 181
BsmBI CGTCTC 1 cut(s) 181
BsmFI GGGAC 1 cut(s) 331
BsmI GAATGC 1 cut(s) 130
Bsp143I GATC 1 cut(s) 271
BspCNI CTCAG 1 cut(s) 55
BspLI GGNNCC 1 cut(s) 114
BssECI CCNNGG 1 cut(s) 256
BssMI GATC 1 cut(s) 271
BssNI GRCGYC 1 cut(s) 174
BssT1I CCWWGG 1 cut(s) 256
Bst4CI ACNGT 1 cut(s) 242
Bst6I CTCTTC 1 cut(s) 92
BstACI GRCGYC 1 cut(s) 174
BstDEI CTNAG 3 cut(s) 63, 169, 311
BstF5I GGATG 1 cut(s) 199
BstH2I RGCGCY 1 cut(s) 169
BstHHI GCGC 1 cut(s) 168
BstKTI GATC 1 cut(s) 274
BstMAI GTCTC 2 cut(s) 61, 181
BstMBI GATC 1 cut(s) 271
BstMWI GCNNNNNNNGC 1 cut(s) 127
BstPAI GACNNNNGTC 1 cut(s) 243
BstV1I GCAGC 3 cut(s) 226, 277, 299
BtsCI GGATG 1 cut(s) 199
BtsIMutI CAGTG 1 cut(s) 14
CfoI GCGC 1 cut(s) 168
CseI GACGC 1 cut(s) 163
CviAII CATG 2 cut(s) 284, 336
CviJI RGCY 4 cut(s) 62, 113, 142, 290
CviKI_1 RGCY 4 cut(s) 62, 113, 142, 290
DdeI CTNAG 3 cut(s) 63, 169, 311
DpnI GATC 1 cut(s) 273
DpnII GATC 1 cut(s) 271
Eam1104I CTCTTC 1 cut(s) 92
EarI CTCTTC 1 cut(s) 92
Eco130I CCWWGG 1 cut(s) 256
Eco47III AGCGCT 1 cut(s) 167
EcoT14I CCWWGG 1 cut(s) 256
ErhI CCWWGG 1 cut(s) 256
Esp3I CGTCTC 1 cut(s) 181
FaeI CATG 2 cut(s) 287, 339
FaiI YATR 7 cut(s) 20, 237, 285, 298, 327, 332, 337
FalI AAGNNNNNCTT 2 cut(s) 131, 163
FaqI GGGAC 1 cut(s) 331
FatI CATG 2 cut(s) 283, 335
FbaI TGATCA 1 cut(s) 271
Fnu4HI GCNGC 3 cut(s) 215, 288, 291
FokI GGATG 1 cut(s) 206
Fsp4HI GCNGC 3 cut(s) 215, 288, 291
GlaI GCGC 1 cut(s) 167
GluI GCNGC 3 cut(s) 215, 288, 291
HaeII RGCGCY 1 cut(s) 169
HgaI GACGC 1 cut(s) 163
HhaI GCGC 1 cut(s) 168
Hin1I GRCGYC 1 cut(s) 174
Hin1II CATG 2 cut(s) 287, 339
Hin6I GCGC 1 cut(s) 166
HinP1I GCGC 1 cut(s) 166
HinfI GANTC 2 cut(s) 160, 230
HphI GGTGA 1 cut(s) 239
Hpy188I TCNGA 1 cut(s) 136
Hpy188III TCNNGA 1 cut(s) 357
HpyAV CCTTC 1 cut(s) 290
HpyCH4III ACNGT 1 cut(s) 242
HpyCH4V TGCA 3 cut(s) 43, 214, 287
HpyF10VI GCNNNNNNNGC 1 cut(s) 127
HpyF3I CTNAG 3 cut(s) 63, 169, 311
Hsp92I GRCGYC 1 cut(s) 174
Hsp92II CATG 2 cut(s) 287, 339
HspAI GCGC 1 cut(s) 166
Ksp22I TGATCA 1 cut(s) 271
Kzo9I GATC 1 cut(s) 271
LmnI GCTCC 1 cut(s) 118
LpnPI CCDG 2 cut(s) 29, 128
Lsp1109I GCAGC 3 cut(s) 226, 277, 299
MaeIII GTNAC 1 cut(s) 245
MalI GATC 1 cut(s) 273
MboI GATC 1 cut(s) 271
MboII GAAGA 1 cut(s) 109
MluCI AATT 4 cut(s) 21, 33, 80, 219
MlyI GAGTC 1 cut(s) 169
MmeI TCCRAC 1 cut(s) 140
MnlI CCTC 2 cut(s) 184, 359
MseI TTAA 1 cut(s) 83
MspA1I CMGCKG 1 cut(s) 290
Mva1269I GAATGC 1 cut(s) 130
MwoI GCNNNNNNNGC 1 cut(s) 127
NdeII GATC 1 cut(s) 271
NlaIII CATG 2 cut(s) 287, 339
NlaIV GGNNCC 1 cut(s) 114
NmuCI GTSAC 1 cut(s) 245
PctI GAATGC 1 cut(s) 130
PfeI GAWTC 1 cut(s) 230
PflFI GACNNNGTC 1 cut(s) 149
PkrI GCNGC 3 cut(s) 216, 289, 292
PleI GAGTC 1 cut(s) 168
PpsI GAGTC 1 cut(s) 168
PshAI GACNNNNGTC 1 cut(s) 243
PspN4I GGNNCC 1 cut(s) 114
PsyI GACNNNGTC 1 cut(s) 149
PvuII CAGCTG 1 cut(s) 290
SaqAI TTAA 1 cut(s) 83
SatI GCNGC 3 cut(s) 215, 288, 291
Sau3AI GATC 1 cut(s) 271
SchI GAGTC 1 cut(s) 169
SetI ASST 5 cut(s) 64, 144, 282, 292, 325
Sse9I AATT 4 cut(s) 21, 33, 80, 219
SspI AATATT 1 cut(s) 55
StyI CCWWGG 1 cut(s) 256
TaaI ACNGT 1 cut(s) 242
TaqI TCGA 2 cut(s) 153, 304
TasI AATT 4 cut(s) 21, 33, 80, 219
TfiI GAWTC 1 cut(s) 230
Tru1I TTAA 1 cut(s) 83
Tru9I TTAA 1 cut(s) 83
TscAI CASTG 1 cut(s) 14
TseFI GTSAC 1 cut(s) 245
TseI GCWGC 3 cut(s) 214, 287, 290
Tsp45I GTSAC 1 cut(s) 245
TspDTI ATGAA 2 cut(s) 219, 272
TspRI CASTG 1 cut(s) 14
Tth111I GACNNNGTC 1 cut(s) 149
XapI RAATTY 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.