RLG00000035298

(-)-germacrene D synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0016832
Physical Location & Seq
Reverse (-)
64508990 .. 64509530
541 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035298

Sequence Viewer

Length: 363 bp
ATGGTGCCAGCAAAAGAGCCTTCACAAAAATTGGACTTAGTTCAAAACATCCAGCGCCTAGGCGTATCTTACCATTTTGAAAATGAGATCGATGAAATTCTGAAACAAATTTACCAGACTACTTATGGTAGTGATGTGGAATATGATGATGACCTTTACACTACTGCTCTTTGTTTTCGGTTACTTACACAACACGGTTATAATGTTTCAAGTGAGGCTCATCTATTGCGGGCATCGGCTGGTGATGCAGATATGTTCAACAAGTTCAAGGAGGATAATGACGAGAAGTTTAAGGAATCTCTTTTGAGTGATGTATTAGGACTATTAAGTTTGTACGAAGCCACCCATCTTAGGATACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

121

Amino Acids

13.82

Weight (kDa)

4.74

Isoelectric Point (pI)

33.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 5 - 120 9.8e-35 Terpene synthase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016832)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g27941
prunus_persica Prupe.4G238800_v2.0.a1
pyrus_communis pycom03g15650 pycom12g15550 pycom12g15650
rosa_chinensis RchiOBHm_Chr4g0399341
rosa_laevigata RLG00000035298
rosa_roxburghii Rroxscaffold_5G00344270
rosa_rugosa Rorug01G0225900 Rorug04G0016800
rosa_samantha Rh1AG240000 Rh5BG405500 Rh6AG030200 Rh7CG421600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 201
AccB1I GGYRCC 1 cut(s) 4
AciI CCGC 1 cut(s) 229
AcsI RAATTY 2 cut(s) 96, 108
AfaI GTAC 1 cut(s) 335
AfiI CCNNNNNNNGG 1 cut(s) 351
AgsI TTSAA 5 cut(s) 44, 80, 210, 259, 268
ApoI RAATTY 2 cut(s) 96, 108
AspA2I CCTAGG 1 cut(s) 58
AspLEI GCGC 1 cut(s) 57
AsuHPI GGTGA 1 cut(s) 254
AvrII CCTAGG 1 cut(s) 58
BanI GGYRCC 1 cut(s) 4
BccI CCATC 1 cut(s) 354
BciVI GTATCC 1 cut(s) 348
BfaI CTAG 1 cut(s) 59
BfoI RGCGCY 1 cut(s) 58
BfuI GTATCC 1 cut(s) 348
BlnI CCTAGG 1 cut(s) 58
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 2 cut(s) 235, 242
Bsa29I ATCGAT 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 58
Bsc4I CCNNNNNNNGG 1 cut(s) 351
BseCI ATCGAT 1 cut(s) 90
BseDI CCNNGG 1 cut(s) 58
BseGI GGATG 1 cut(s) 48
BseLI CCNNNNNNNGG 1 cut(s) 351
BshNI GGYRCC 1 cut(s) 4
BshVI ATCGAT 1 cut(s) 90
BslI CCNNNNNNNGG 1 cut(s) 351
Bsp143I GATC 1 cut(s) 87
BspACI CCGC 1 cut(s) 229
BspDI ATCGAT 1 cut(s) 90
BspLI GGNNCC 1 cut(s) 6
BspT107I GGYRCC 1 cut(s) 4
BssECI CCNNGG 1 cut(s) 58
BssMI GATC 1 cut(s) 87
BssT1I CCWWGG 1 cut(s) 58
Bst4CI ACNGT 1 cut(s) 197
BstC8I GCNNGC 2 cut(s) 9, 231
BstDEI CTNAG 2 cut(s) 37, 350
BstF5I GGATG 1 cut(s) 48
BstH2I RGCGCY 1 cut(s) 58
BstHHI GCGC 1 cut(s) 57
BstKTI GATC 1 cut(s) 90
BstMBI GATC 1 cut(s) 87
BstMWI GCNNNNNNNGC 1 cut(s) 245
Bsu15I ATCGAT 1 cut(s) 90
BsuI GTATCC 1 cut(s) 348
BsuTUI ATCGAT 1 cut(s) 90
BtsCI GGATG 1 cut(s) 48
BtsIMutI CAGTG 1 cut(s) 358
Cac8I GCNNGC 2 cut(s) 9, 231
CfoI GCGC 1 cut(s) 57
ClaI ATCGAT 1 cut(s) 90
Csp6I GTAC 1 cut(s) 334
CviJI RGCY 4 cut(s) 19, 218, 239, 341
CviKI_1 RGCY 4 cut(s) 19, 218, 239, 341
CviQI GTAC 1 cut(s) 334
DdeI CTNAG 2 cut(s) 37, 350
DpnI GATC 1 cut(s) 89
DpnII GATC 1 cut(s) 87
Eco130I CCWWGG 1 cut(s) 58
EcoT14I CCWWGG 1 cut(s) 58
ErhI CCWWGG 1 cut(s) 58
FaiI YATR 4 cut(s) 126, 144, 201, 254
FauI CCCGC 1 cut(s) 222
FokI GGATG 1 cut(s) 35
FspBI CTAG 1 cut(s) 59
GlaI GCGC 1 cut(s) 56
HaeII RGCGCY 1 cut(s) 58
HhaI GCGC 1 cut(s) 57
Hin6I GCGC 1 cut(s) 55
HinP1I GCGC 1 cut(s) 55
HinfI GANTC 1 cut(s) 296
HphI GGTGA 1 cut(s) 254
Hpy188I TCNGA 1 cut(s) 102
HpyAV CCTTC 1 cut(s) 30
HpyCH4III ACNGT 1 cut(s) 197
HpyCH4V TGCA 1 cut(s) 248
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
HpyF3I CTNAG 2 cut(s) 37, 350
HspAI GCGC 1 cut(s) 55
Kzo9I GATC 1 cut(s) 87
LpnPI CCDG 4 cut(s) 21, 65, 128, 225
LweI GCATC 2 cut(s) 235, 242
MaeI CTAG 1 cut(s) 59
MaeIII GTNAC 1 cut(s) 180
MalI GATC 1 cut(s) 89
MboI GATC 1 cut(s) 87
MluCI AATT 3 cut(s) 29, 96, 108
MnlI CCTC 2 cut(s) 208, 265
MseI TTAA 2 cut(s) 291, 326
MwoI GCNNNNNNNGC 1 cut(s) 245
NdeII GATC 1 cut(s) 87
NlaIV GGNNCC 1 cut(s) 6
PfeI GAWTC 1 cut(s) 296
PsiI TTATAA 1 cut(s) 201
PspN4I GGNNCC 1 cut(s) 6
RsaI GTAC 1 cut(s) 335
RsaNI GTAC 1 cut(s) 334
SaqAI TTAA 2 cut(s) 291, 326
Sau3AI GATC 1 cut(s) 87
SetI ASST 1 cut(s) 156
SfaNI GCATC 2 cut(s) 235, 242
Sse9I AATT 3 cut(s) 29, 96, 108
SsiI CCGC 1 cut(s) 229
SspMI CTAG 1 cut(s) 59
StyI CCWWGG 1 cut(s) 58
TaaI ACNGT 1 cut(s) 197
TaqI TCGA 1 cut(s) 90
TasI AATT 3 cut(s) 29, 96, 108
TfiI GAWTC 1 cut(s) 296
Tru1I TTAA 2 cut(s) 291, 326
Tru9I TTAA 2 cut(s) 291, 326
TspDTI ATGAA 1 cut(s) 108
XapI RAATTY 2 cut(s) 96, 108
XcmI CCANNNNNNNNNTGG 1 cut(s) 122
XmaJI CCTAGG 1 cut(s) 58
XspI CTAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.