Rh7CG421600

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0016832
Physical Location & Seq
Reverse (-)
54447861 .. 54453202
5342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG421600.1

Sequence Viewer

Length: 399 bp
ATGGAAGCAATGAATCTAAATCAAATCTCAAGGTGGCTAAGCCAACATGTCTCACTTTATGCCCCTGCAACAACATGGTTGAATGAGGAAACTGCAAGCAATGAAAACGGGCAACGGGTCCAAGAATTGAAGGAAGACGTGAAGCGGATGCTTATAATGTCTCCAACTTCACAAAAATTAAATTTAATCGATGACATTCAACGCTTAGGAGTGTCCTACCATTTTGAAAATGAGATTCACCAAATGCTGCAGAAAATTCACAACTCTTCCTATGATGACCAAGAAAATAATGATGATGATGAGCTTTACACAATTGCTCTACGTTTTCGATTTCTTAGACAACAAGGTTTTGAGGTTTCATGCAGTAAGTACATAGCTAGTCCTTTTCTCAATCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

132

Amino Acids

15.54

Weight (kDa)

4.98

Isoelectric Point (pI)

59.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 28 - 122 5.5e-29 Terpene synthase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016832)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g27941
prunus_persica Prupe.4G238800_v2.0.a1
pyrus_communis pycom03g15650 pycom12g15550 pycom12g15650
rosa_chinensis RchiOBHm_Chr4g0399341
rosa_laevigata RLG00000035298
rosa_roxburghii Rroxscaffold_5G00344270
rosa_rugosa Rorug01G0225900 Rorug04G0016800
rosa_samantha Rh1AG240000 Rh5BG405500 Rh6AG030200 Rh7CG421600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 155
AciI CCGC 1 cut(s) 145
AcsI RAATTY 2 cut(s) 181, 255
AfaI GTAC 1 cut(s) 371
AflIII ACRYGT 1 cut(s) 46
AgsI TTSAA 4 cut(s) 82, 130, 200, 227
AjiI CACGTC 1 cut(s) 139
AluBI AGCT 2 cut(s) 304, 377
AluI AGCT 2 cut(s) 304, 377
Alw26I GTCTC 2 cut(s) 55, 165
ApeKI GCWGC 1 cut(s) 247
ApoI RAATTY 2 cut(s) 181, 255
AspS9I GGNCC 1 cut(s) 118
AsuHPI GGTGA 1 cut(s) 230
AvaII GGWCC 1 cut(s) 118
BbsI GAAGAC 1 cut(s) 141
BbvI GCAGC 1 cut(s) 234
BcoDI GTCTC 2 cut(s) 55, 165
BfaI CTAG 1 cut(s) 378
BfmI CTRYAG 1 cut(s) 248
BisI GCNGC 1 cut(s) 248
BlpI GCTNAGC 1 cut(s) 38
BlsI GCNGC 1 cut(s) 249
Bme18I GGWCC 1 cut(s) 118
BmgBI CACGTC 1 cut(s) 139
BmgT120I GGNCC 1 cut(s) 118
BmiI GGNNCC 1 cut(s) 119
BmsI GCATC 1 cut(s) 138
BpiI GAAGAC 1 cut(s) 141
Bpu10I CCTNAGC 1 cut(s) 205
Bpu1102I GCTNAGC 1 cut(s) 38
BpuEI CTTGAG 1 cut(s) 13
Bsa29I ATCGAT 1 cut(s) 189
Bse3DI GCAATG 2 cut(s) 15, 106
BseCI ATCGAT 1 cut(s) 189
BseGI GGATG 1 cut(s) 153
BseMI GCAATG 2 cut(s) 15, 106
BseXI GCAGC 1 cut(s) 234
BshVI ATCGAT 1 cut(s) 189
BsmAI GTCTC 2 cut(s) 55, 165
Bsp1720I GCTNAGC 1 cut(s) 38
BspACI CCGC 1 cut(s) 145
BspDI ATCGAT 1 cut(s) 189
BspLI GGNNCC 1 cut(s) 119
BspMAI CTGCAG 1 cut(s) 252
BsrDI GCAATG 2 cut(s) 15, 106
Bst6I CTCTTC 1 cut(s) 271
BstC8I GCNNGC 1 cut(s) 97
BstDEI CTNAG 3 cut(s) 38, 205, 335
BstF5I GGATG 1 cut(s) 153
BstMAI GTCTC 2 cut(s) 55, 165
BstNSI RCATGY 1 cut(s) 50
BstSFI CTRYAG 1 cut(s) 248
BstV1I GCAGC 1 cut(s) 234
BstV2I GAAGAC 1 cut(s) 141
Bsu15I ATCGAT 1 cut(s) 189
BsuTUI ATCGAT 1 cut(s) 189
BtrI CACGTC 1 cut(s) 139
BtsCI GGATG 1 cut(s) 153
Cac8I GCNNGC 1 cut(s) 97
Cfr13I GGNCC 1 cut(s) 118
ClaI ATCGAT 1 cut(s) 189
Csp6I GTAC 1 cut(s) 370
CviAII CATG 3 cut(s) 47, 75, 360
CviJI RGCY 4 cut(s) 37, 42, 304, 377
CviKI_1 RGCY 4 cut(s) 37, 42, 304, 377
CviQI GTAC 1 cut(s) 370
DdeI CTNAG 3 cut(s) 38, 205, 335
Eam1104I CTCTTC 1 cut(s) 271
EarI CTCTTC 1 cut(s) 271
Eco47I GGWCC 1 cut(s) 118
FaeI CATG 3 cut(s) 50, 78, 363
FaiI YATR 7 cut(s) 48, 60, 76, 155, 273, 361, 374
FatI CATG 3 cut(s) 46, 74, 359
Fnu4HI GCNGC 1 cut(s) 248
FokI GGATG 1 cut(s) 160
Fsp4HI GCNGC 1 cut(s) 248
FspBI CTAG 1 cut(s) 378
GluI GCNGC 1 cut(s) 248
Hin1II CATG 3 cut(s) 50, 78, 363
HinfI GANTC 2 cut(s) 13, 235
HphI GGTGA 1 cut(s) 230
HpyAV CCTTC 1 cut(s) 124
HpyCH4IV ACGT 2 cut(s) 138, 322
HpyCH4V TGCA 4 cut(s) 68, 95, 250, 363
HpyF3I CTNAG 3 cut(s) 38, 205, 335
HpySE526I ACGT 2 cut(s) 138, 322
Hsp92II CATG 3 cut(s) 50, 78, 363
LpnPI CCDG 1 cut(s) 78
Lsp1109I GCAGC 1 cut(s) 234
LweI GCATC 1 cut(s) 138
MaeI CTAG 1 cut(s) 378
MaeII ACGT 2 cut(s) 138, 322
MboII GAAGA 2 cut(s) 146, 258
MfeI CAATTG 1 cut(s) 312
MluCI AATT 5 cut(s) 125, 176, 181, 255, 312
MmeI TCCRAC 1 cut(s) 188
MnlI CCTC 2 cut(s) 79, 346
MseI TTAA 2 cut(s) 179, 185
MunI CAATTG 1 cut(s) 312
NlaIII CATG 3 cut(s) 50, 78, 363
NlaIV GGNNCC 1 cut(s) 119
NspI RCATGY 1 cut(s) 50
PciI ACATGT 1 cut(s) 46
PfeI GAWTC 2 cut(s) 13, 235
PkrI GCNGC 1 cut(s) 249
PscI ACATGT 1 cut(s) 46
PsiI TTATAA 1 cut(s) 155
PspN4I GGNNCC 1 cut(s) 119
PspPI GGNCC 1 cut(s) 118
PstI CTGCAG 1 cut(s) 252
RsaI GTAC 1 cut(s) 371
RsaNI GTAC 1 cut(s) 370
SaqAI TTAA 2 cut(s) 179, 185
SatI GCNGC 1 cut(s) 248
Sau96I GGNCC 1 cut(s) 118
SetI ASST 7 cut(s) 35, 141, 306, 325, 349, 357, 379
SfaNI GCATC 1 cut(s) 138
SfcI CTRYAG 1 cut(s) 248
SinI GGWCC 1 cut(s) 118
SmlI CTYRAG 1 cut(s) 28
SmoI CTYRAG 1 cut(s) 28
Sse9I AATT 5 cut(s) 125, 176, 181, 255, 312
SsiI CCGC 1 cut(s) 145
SspMI CTAG 1 cut(s) 378
TaiI ACGT 2 cut(s) 141, 325
TaqI TCGA 2 cut(s) 189, 328
TasI AATT 5 cut(s) 125, 176, 181, 255, 312
TatI WGTACW 1 cut(s) 369
TfiI GAWTC 2 cut(s) 13, 235
Tru1I TTAA 2 cut(s) 179, 185
Tru9I TTAA 2 cut(s) 179, 185
TseI GCWGC 1 cut(s) 247
TspDTI ATGAA 3 cut(s) 26, 117, 348
VpaK11BI GGWCC 1 cut(s) 118
XapI RAATTY 2 cut(s) 181, 255
XceI RCATGY 1 cut(s) 50
XspI CTAG 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.