Rh1AG240000

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0016832
Physical Location & Seq
Forward (+)
45068297 .. 45069021
725 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG240000.1

Sequence Viewer

Length: 480 bp
ATGTCTGTCCAACTTTCTTCAGCATCTGAAGCCCAGAGCCCAAATGCCACTGCTGTTGTCAAGCGACGTTCAACTAATTTTCCGCCTAGCATGTGGGGTGAATATTTTCTGTCATATGCTTCCATGGAAGTGGATATTACTCTTGAGCATCAGGTTCAACAACTGAAGGAAGAAGTGAAGAGGATGCTTATGGATAATGTTAGAGACAGTTCCCAAAAACTAAGCTTGATTGATGACATTCAACGCCTAGGCGTGTCCTACCATTTCGACAATGAGATTTGTGAAATTTTGCAACAAATATTTGACAATGACCATGTTTCATATGATAATCTTCATCAAAATAATTCCGACCTTTATGCAGCTGCTCTTCGTTTCCGATTGCTTAGGCAACAAGGGTATAATGCTTCTTGTGACATGTACTTCAGCAATTTGAAAGACAATGATGGGCTTATCTCGAGTGTGCAACACGCCGTGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

159

Amino Acids

18.23

Weight (kDa)

4.95

Isoelectric Point (pI)

58.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 31 - 150 8.8e-32 Terpene synthase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016832)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g27941
prunus_persica Prupe.4G238800_v2.0.a1
pyrus_communis pycom03g15650 pycom12g15550 pycom12g15650
rosa_chinensis RchiOBHm_Chr4g0399341
rosa_laevigata RLG00000035298
rosa_roxburghii Rroxscaffold_5G00344270
rosa_rugosa Rorug01G0225900 Rorug04G0016800
rosa_samantha Rh1AG240000 Rh5BG405500 Rh6AG030200 Rh7CG421600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 83
AcsI RAATTY 1 cut(s) 285
AcuI CTGAAG 3 cut(s) 48, 185, 406
AdeI CACNNNGTG 1 cut(s) 472
AfaI GTAC 1 cut(s) 419
AflIII ACRYGT 1 cut(s) 414
AgsI TTSAA 4 cut(s) 72, 158, 242, 433
AluBI AGCT 2 cut(s) 225, 362
AluI AGCT 2 cut(s) 225, 362
Alw26I GTCTC 1 cut(s) 198
AlwNI CAGNNNCTG 1 cut(s) 26
Ama87I CYCGRG 1 cut(s) 454
ApeKI GCWGC 2 cut(s) 359, 362
ApoI RAATTY 1 cut(s) 285
Asp700I GAANNNNTTC 1 cut(s) 105
AspA2I CCTAGG 1 cut(s) 247
AsuHPI GGTGA 1 cut(s) 110
AvaI CYCGRG 1 cut(s) 454
AvrII CCTAGG 1 cut(s) 247
BanII GRGCYC 1 cut(s) 41
BbvI GCAGC 2 cut(s) 349, 371
BccI CCATC 1 cut(s) 437
BceAI ACGGC 1 cut(s) 455
BcgI CGANNNNNNTGC 2 cut(s) 338, 372
BcoDI GTCTC 1 cut(s) 198
BfaI CTAG 2 cut(s) 87, 248
BisI GCNGC 2 cut(s) 360, 363
BlnI CCTAGG 1 cut(s) 247
BlsI GCNGC 2 cut(s) 361, 364
BmeT110I CYCGRG 1 cut(s) 454
BmsI GCATC 3 cut(s) 32, 157, 174
Bpu10I CCTNAGC 1 cut(s) 383
BpuEI CTTGAG 1 cut(s) 164
BsaJI CCNNGG 3 cut(s) 123, 247, 471
BseDI CCNNGG 3 cut(s) 123, 247, 471
BseGI GGATG 1 cut(s) 189
BseXI GCAGC 2 cut(s) 349, 371
BsiHKCI CYCGRG 1 cut(s) 454
BsmAI GTCTC 1 cut(s) 198
BsoBI CYCGRG 1 cut(s) 454
Bsp1286I GDGCHC 1 cut(s) 41
Bsp19I CCATGG 1 cut(s) 123
BspACI CCGC 1 cut(s) 83
BspQI GCTCTTC 1 cut(s) 372
BssECI CCNNGG 3 cut(s) 123, 247, 471
BssT1I CCWWGG 2 cut(s) 123, 247
Bst4CI ACNGT 1 cut(s) 209
Bst6I CTCTTC 2 cut(s) 173, 372
BstDEI CTNAG 2 cut(s) 221, 383
BstDSI CCRYGG 2 cut(s) 123, 471
BstF5I GGATG 1 cut(s) 189
BstMAI GTCTC 1 cut(s) 198
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstNSI RCATGY 2 cut(s) 94, 418
BstV1I GCAGC 2 cut(s) 349, 371
BstXI CCANNNNNNTGG 1 cut(s) 130
BtgI CCRYGG 2 cut(s) 123, 471
BtsCI GGATG 1 cut(s) 189
BtsI GCAGTG 1 cut(s) 48
BtsIMutI CAGTG 1 cut(s) 48
CaiI CAGNNNCTG 1 cut(s) 26
Csp6I GTAC 1 cut(s) 418
CspCI CAANNNNNGTGG 2 cut(s) 37, 72
CviAII CATG 4 cut(s) 91, 124, 314, 415
CviJI RGCY 5 cut(s) 32, 39, 225, 362, 448
CviKI_1 RGCY 5 cut(s) 32, 39, 225, 362, 448
CviQI GTAC 1 cut(s) 418
DdeI CTNAG 2 cut(s) 221, 383
DraIII CACNNNGTG 1 cut(s) 472
Eam1104I CTCTTC 2 cut(s) 173, 372
EarI CTCTTC 2 cut(s) 173, 372
EciI GGCGGA 1 cut(s) 72
Eco130I CCWWGG 2 cut(s) 123, 247
Eco24I GRGCYC 1 cut(s) 41
Eco57I CTGAAG 3 cut(s) 48, 185, 406
Eco88I CYCGRG 1 cut(s) 454
EcoT14I CCWWGG 2 cut(s) 123, 247
EcoT38I GRGCYC 1 cut(s) 41
ErhI CCWWGG 2 cut(s) 123, 247
FaeI CATG 4 cut(s) 94, 127, 317, 418
FatI CATG 4 cut(s) 90, 123, 313, 414
FauNDI CATATG 2 cut(s) 115, 322
Fnu4HI GCNGC 2 cut(s) 360, 363
FokI GGATG 1 cut(s) 196
FriOI GRGCYC 1 cut(s) 41
Fsp4HI GCNGC 2 cut(s) 360, 363
FspBI CTAG 2 cut(s) 87, 248
GluI GCNGC 2 cut(s) 360, 363
Hin1II CATG 4 cut(s) 94, 127, 317, 418
HindIII AAGCTT 1 cut(s) 223
HphI GGTGA 1 cut(s) 110
Hpy188I TCNGA 3 cut(s) 28, 349, 377
Hpy188III TCNNGA 2 cut(s) 143, 454
Hpy99I CGWCG 1 cut(s) 69
HpyAV CCTTC 1 cut(s) 160
HpyCH4III ACNGT 1 cut(s) 209
HpyCH4IV ACGT 1 cut(s) 67
HpyCH4V TGCA 3 cut(s) 292, 359, 463
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpyF3I CTNAG 2 cut(s) 221, 383
HpySE526I ACGT 1 cut(s) 67
Hsp92II CATG 4 cut(s) 94, 127, 317, 418
LguI GCTCTTC 1 cut(s) 372
LpnPI CCDG 2 cut(s) 47, 137
Lsp1109I GCAGC 2 cut(s) 349, 371
LweI GCATC 3 cut(s) 32, 157, 174
MaeI CTAG 2 cut(s) 87, 248
MaeII ACGT 1 cut(s) 67
MaeIII GTNAC 1 cut(s) 410
MboII GAAGA 5 cut(s) 9, 182, 190, 323, 359
MhlI GDGCHC 1 cut(s) 41
MluCI AATT 4 cut(s) 76, 285, 343, 427
MmeI TCCRAC 2 cut(s) 34, 372
MnlI CCTC 1 cut(s) 174
MroXI GAANNNNTTC 1 cut(s) 105
MseI TTAA 1 cut(s) 478
MslI CAYNNNNRTG 1 cut(s) 128
MspA1I CMGCKG 1 cut(s) 362
MwoI GCNNNNNNNGC 1 cut(s) 29
NcoI CCATGG 1 cut(s) 123
NdeI CATATG 2 cut(s) 115, 322
NlaIII CATG 4 cut(s) 94, 127, 317, 418
NmuCI GTSAC 1 cut(s) 410
NspI RCATGY 2 cut(s) 94, 418
PaeR7I CTCGAG 1 cut(s) 454
PciI ACATGT 1 cut(s) 414
PciSI GCTCTTC 1 cut(s) 372
PdmI GAANNNNTTC 1 cut(s) 105
PkrI GCNGC 2 cut(s) 361, 364
PscI ACATGT 1 cut(s) 414
PstNI CAGNNNCTG 1 cut(s) 26
PvuII CAGCTG 1 cut(s) 362
RsaI GTAC 1 cut(s) 419
RsaNI GTAC 1 cut(s) 418
RseI CAYNNNNRTG 1 cut(s) 128
SapI GCTCTTC 1 cut(s) 372
SaqAI TTAA 1 cut(s) 478
SatI GCNGC 2 cut(s) 360, 363
SduI GDGCHC 1 cut(s) 41
SetI ASST 5 cut(s) 70, 156, 227, 354, 364
SfaNI GCATC 3 cut(s) 32, 157, 174
Sfr274I CTCGAG 1 cut(s) 454
SlaI CTCGAG 1 cut(s) 454
SmiMI CAYNNNNRTG 1 cut(s) 128
SmlI CTYRAG 2 cut(s) 143, 454
SmoI CTYRAG 2 cut(s) 143, 454
Sse9I AATT 4 cut(s) 76, 285, 343, 427
SsiI CCGC 1 cut(s) 83
SspI AATATT 2 cut(s) 104, 300
SspMI CTAG 2 cut(s) 87, 248
StyI CCWWGG 2 cut(s) 123, 247
TaaI ACNGT 1 cut(s) 209
TaiI ACGT 1 cut(s) 70
TaqI TCGA 2 cut(s) 267, 455
TasI AATT 4 cut(s) 76, 285, 343, 427
TatI WGTACW 1 cut(s) 417
Tru1I TTAA 1 cut(s) 478
Tru9I TTAA 1 cut(s) 478
TscAI CASTG 1 cut(s) 55
TseFI GTSAC 1 cut(s) 410
TseI GCWGC 2 cut(s) 359, 362
Tsp45I GTSAC 1 cut(s) 410
TspDTI ATGAA 2 cut(s) 309, 323
TspRI CASTG 1 cut(s) 55
XapI RAATTY 1 cut(s) 285
XceI RCATGY 2 cut(s) 94, 418
XhoI CTCGAG 1 cut(s) 454
XmaJI CCTAGG 1 cut(s) 247
XmnI GAANNNNTTC 1 cut(s) 105
XspI CTAG 2 cut(s) 87, 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.