Rh6AG030200

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0016832
Physical Location & Seq
Forward (+)
3684161 .. 3685203
1043 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG030200.1

Sequence Viewer

Length: 501 bp
ATGTCAGTCCAAGTTTTGGCATCTCAGGCTCAAAGGCCAGATAGTGTGGCTGATGTTAAGCGACCGTCAGCTAATTTTGCCCCAGGCATTTGGGGTGATCATTTTCTCTCCTATGCTACCACGGAAGTTGACACTAAACTTGAGCAACATGTTCGAGAACTGAAAGAAGAGGTGAAGAGGATGCTAATGGACTCCTTAAAAAACCCTTCACAACAATTGAACTTGGTTGATGACATTCAACACCTAGGCGTGTCCTATCATTTTGAGAATGAGATTGAAGAAATTTTGAAACAAATTCACCACAACTACTCTTATGATAATATGATATATAGAGGCTCATATAATGGATTCCTTGGTGATGCAGATATGTTCAACAAGTACATGGAAGGAAATGATAAAAAAATTAAGGCATCTCTCCTAAGTGATGTATCCGGACTATTAAGCTTGTATGAAGCGCGCATCTTAGGATACACGAAGAAGACATACTTGAAGAGGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

166

Amino Acids

19.11

Weight (kDa)

6.06

Isoelectric Point (pI)

37.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 30 - 164 1.5e-24 Terpene synthase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016832)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g27941
prunus_persica Prupe.4G238800_v2.0.a1
pyrus_communis pycom03g15650 pycom12g15550 pycom12g15650
rosa_chinensis RchiOBHm_Chr4g0399341
rosa_laevigata RLG00000035298
rosa_roxburghii Rroxscaffold_5G00344270
rosa_rugosa Rorug01G0225900 Rorug04G0016800
rosa_samantha Rh1AG240000 Rh5BG405500 Rh6AG030200 Rh7CG421600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 16
AccII CGCG 1 cut(s) 457
AccIII TCCGGA 1 cut(s) 431
AcsI RAATTY 2 cut(s) 282, 294
AfaI GTAC 1 cut(s) 380
AfiI CCNNNNNNNGG 1 cut(s) 16
AflIII ACRYGT 1 cut(s) 148
AgsI TTSAA 6 cut(s) 220, 239, 278, 289, 373, 490
AjnI CCWGG 1 cut(s) 82
AluBI AGCT 2 cut(s) 71, 444
AluI AGCT 2 cut(s) 71, 444
Aor13HI TCCGGA 1 cut(s) 431
AoxI GGCC 1 cut(s) 35
ApoI RAATTY 2 cut(s) 282, 294
AspA2I CCTAGG 1 cut(s) 244
AspLEI GCGC 2 cut(s) 457, 459
AsuHPI GGTGA 4 cut(s) 107, 184, 290, 368
AvrII CCTAGG 1 cut(s) 244
BarI GAAGNNNNNNTAC 2 cut(s) 467, 499
BbsI GAAGAC 1 cut(s) 485
BcgI CGANNNNNNTGC 2 cut(s) 134, 168
BciT130I CCWGG 1 cut(s) 84
BciVI GTATCC 2 cut(s) 439, 461
BclI TGATCA 1 cut(s) 97
BfaI CTAG 2 cut(s) 245, 499
BfuI GTATCC 2 cut(s) 439, 461
BlnI CCTAGG 1 cut(s) 244
Bme1390I CCNGG 1 cut(s) 84
BmrFI CCNGG 1 cut(s) 84
BmsI GCATC 5 cut(s) 29, 171, 349, 419, 468
BpiI GAAGAC 1 cut(s) 485
BpuEI CTTGAG 1 cut(s) 161
BsaJI CCNNGG 4 cut(s) 82, 120, 244, 352
BsaWI WCCGGW 1 cut(s) 431
Bsc4I CCNNNNNNNGG 1 cut(s) 16
BseAI TCCGGA 1 cut(s) 431
BseBI CCWGG 1 cut(s) 84
BseDI CCNNGG 4 cut(s) 82, 120, 244, 352
BseGI GGATG 1 cut(s) 186
BseLI CCNNNNNNNGG 1 cut(s) 16
BseMII CTCAG 1 cut(s) 38
BsePI GCGCGC 1 cut(s) 455
Bsh1236I CGCG 1 cut(s) 457
Bsh1285I CGRYCG 1 cut(s) 65
BshFI GGCC 1 cut(s) 37
BsiEI CGRYCG 1 cut(s) 65
BsiSI CCGG 1 cut(s) 432
BslI CCNNNNNNNGG 1 cut(s) 16
BsnI GGCC 1 cut(s) 37
Bsp13I TCCGGA 1 cut(s) 431
Bsp143I GATC 1 cut(s) 97
BspANI GGCC 1 cut(s) 37
BspCNI CTCAG 1 cut(s) 37
BspEI TCCGGA 1 cut(s) 431
BspFNI CGCG 1 cut(s) 457
BssECI CCNNGG 4 cut(s) 82, 120, 244, 352
BssHII GCGCGC 1 cut(s) 455
BssMI GATC 1 cut(s) 97
BssT1I CCWWGG 2 cut(s) 244, 352
Bst2UI CCWGG 1 cut(s) 84
Bst4CI ACNGT 1 cut(s) 66
Bst6I CTCTTC 3 cut(s) 162, 170, 485
BstC8I GCNNGC 1 cut(s) 457
BstDEI CTNAG 3 cut(s) 24, 419, 463
BstDSI CCRYGG 1 cut(s) 120
BstF5I GGATG 1 cut(s) 186
BstFNI CGCG 1 cut(s) 457
BstHHI GCGC 2 cut(s) 457, 459
BstKTI GATC 1 cut(s) 100
BstMBI GATC 1 cut(s) 97
BstMCI CGRYCG 1 cut(s) 65
BstMWI GCNNNNNNNGC 2 cut(s) 26, 77
BstNI CCWGG 1 cut(s) 84
BstNSI RCATGY 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 82
BstUI CGCG 1 cut(s) 457
BstV2I GAAGAC 1 cut(s) 485
BstXI CCANNNNNNTGG 1 cut(s) 90
BsuI GTATCC 2 cut(s) 439, 461
BsuRI GGCC 1 cut(s) 37
BtgI CCRYGG 1 cut(s) 120
BtsCI GGATG 1 cut(s) 186
Cac8I GCNNGC 1 cut(s) 457
CfoI GCGC 2 cut(s) 457, 459
Csp6I GTAC 1 cut(s) 379
CspCI CAANNNNNGTGG 2 cut(s) 109, 144
CviAII CATG 2 cut(s) 149, 382
CviJI RGCY 7 cut(s) 29, 37, 50, 71, 336, 444, 496
CviKI_1 RGCY 7 cut(s) 29, 37, 50, 71, 336, 444, 496
CviQI GTAC 1 cut(s) 379
DdeI CTNAG 3 cut(s) 24, 419, 463
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
Eam1104I CTCTTC 3 cut(s) 162, 170, 485
EarI CTCTTC 3 cut(s) 162, 170, 485
Eco130I CCWWGG 2 cut(s) 244, 352
EcoRII CCWGG 1 cut(s) 82
EcoT14I CCWWGG 2 cut(s) 244, 352
ErhI CCWWGG 2 cut(s) 244, 352
FaeI CATG 2 cut(s) 152, 385
FalI AAGNNNNNCTT 1 cut(s) 470
FatI CATG 2 cut(s) 148, 381
FbaI TGATCA 1 cut(s) 97
FokI GGATG 1 cut(s) 193
FspBI CTAG 2 cut(s) 245, 499
GlaI GCGC 2 cut(s) 456, 458
HaeIII GGCC 1 cut(s) 37
HapII CCGG 1 cut(s) 432
HhaI GCGC 2 cut(s) 457, 459
Hin1II CATG 2 cut(s) 152, 385
Hin6I GCGC 2 cut(s) 455, 457
HinP1I GCGC 2 cut(s) 455, 457
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HindIII AAGCTT 1 cut(s) 442
HinfI GANTC 2 cut(s) 191, 348
HpaII CCGG 1 cut(s) 432
HphI GGTGA 4 cut(s) 107, 184, 290, 368
Hpy166II GTNNAC 1 cut(s) 130
Hpy188III TCNNGA 2 cut(s) 155, 432
Hpy8I GTNNAC 1 cut(s) 130
HpyAV CCTTC 2 cut(s) 216, 380
HpyCH4III ACNGT 1 cut(s) 66
HpyCH4V TGCA 1 cut(s) 362
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 77
HpyF3I CTNAG 3 cut(s) 24, 419, 463
Hsp92II CATG 2 cut(s) 152, 385
HspAI GCGC 2 cut(s) 455, 457
Kpn2I TCCGGA 1 cut(s) 431
Ksp22I TGATCA 1 cut(s) 97
Kzo9I GATC 1 cut(s) 97
LpnPI CCDG 5 cut(s) 11, 51, 69, 96, 445
LweI GCATC 5 cut(s) 29, 171, 349, 419, 468
MaeI CTAG 2 cut(s) 245, 499
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MboII GAAGA 5 cut(s) 179, 187, 290, 487, 490
MfeI CAATTG 1 cut(s) 215
MluCI AATT 5 cut(s) 73, 215, 282, 294, 402
MlyI GAGTC 1 cut(s) 185
MnlI CCTC 4 cut(s) 163, 171, 326, 486
MroI TCCGGA 1 cut(s) 431
MseI TTAA 4 cut(s) 57, 197, 405, 440
MspI CCGG 1 cut(s) 432
MspR9I CCNGG 1 cut(s) 84
MunI CAATTG 1 cut(s) 215
MvaI CCWGG 1 cut(s) 84
MvnI CGCG 1 cut(s) 457
MwoI GCNNNNNNNGC 2 cut(s) 26, 77
NdeII GATC 1 cut(s) 97
NlaIII CATG 2 cut(s) 152, 385
NspI RCATGY 1 cut(s) 152
PauI GCGCGC 1 cut(s) 455
PciI ACATGT 1 cut(s) 148
PfeI GAWTC 1 cut(s) 348
PflMI CCANNNNNTGG 1 cut(s) 16
PleI GAGTC 1 cut(s) 185
PpsI GAGTC 1 cut(s) 185
PscI ACATGT 1 cut(s) 148
Psp6I CCWGG 1 cut(s) 82
PspGI CCWGG 1 cut(s) 82
PteI GCGCGC 1 cut(s) 455
RsaI GTAC 1 cut(s) 380
RsaNI GTAC 1 cut(s) 379
SaqAI TTAA 4 cut(s) 57, 197, 405, 440
Sau3AI GATC 1 cut(s) 97
SchI GAGTC 1 cut(s) 185
ScrFI CCNGG 1 cut(s) 84
SetI ASST 4 cut(s) 73, 174, 246, 446
SfaNI GCATC 5 cut(s) 29, 171, 349, 419, 468
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
Sse9I AATT 5 cut(s) 73, 215, 282, 294, 402
SspMI CTAG 2 cut(s) 245, 499
StyD4I CCNGG 1 cut(s) 82
StyI CCWWGG 2 cut(s) 244, 352
TaaI ACNGT 1 cut(s) 66
TaqI TCGA 1 cut(s) 154
TasI AATT 5 cut(s) 73, 215, 282, 294, 402
TatI WGTACW 1 cut(s) 378
TfiI GAWTC 1 cut(s) 348
Tru1I TTAA 4 cut(s) 57, 197, 405, 440
Tru9I TTAA 4 cut(s) 57, 197, 405, 440
TspDTI ATGAA 1 cut(s) 465
TspGWI ACGGA 1 cut(s) 137
Van91I CCANNNNNTGG 1 cut(s) 16
XapI RAATTY 2 cut(s) 282, 294
XceI RCATGY 1 cut(s) 152
XmaJI CCTAGG 1 cut(s) 244
XspI CTAG 2 cut(s) 245, 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.