pycom12g15550

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0016832
Physical Location & Seq
Reverse (-)
17953746 .. 17954629
884 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g15550.2

Sequence Viewer

Length: 402 bp
ATGTCTTCTGTGGAAGTTCCACCATCTCAATCTTCAAACCCAAATGACACTTTTGATGTCCATCGGCCTAAGCCTTCAGCCACTTTTTCTCCCAGCATTTGGGGTGACCATTTTCTGTCCTATGCTTCTTTGGACGTGGATGCTGAACTTGAACAACATGTACAAGAACTGAAGGAAGAAGTAAGAAGGATGCTAACGACATCACCTGAAAATGTTTCCCAAAAGTTGAACTTGATCGATGACATTCAGCGCTTAGGTGTGTCCTACCATTTTGGAAATGAAATTGAAGAAAGTTTACAGAAAATTCACAAGAGCTCTTATGATTTGGATGACCTGTACACAGCTGCTCTTCGTTTTCGATTGCTTAGACAACAAGGTTATAACATTTCATGCGGTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

134

Amino Acids

15.18

Weight (kDa)

5.11

Isoelectric Point (pI)

72.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016832)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g27941
prunus_persica Prupe.4G238800_v2.0.a1
pyrus_communis pycom03g15650 pycom12g15550 pycom12g15650
rosa_chinensis RchiOBHm_Chr4g0399341
rosa_laevigata RLG00000035298
rosa_roxburghii Rroxscaffold_5G00344270
rosa_rugosa Rorug01G0225900 Rorug04G0016800
rosa_samantha Rh1AG240000 Rh5BG405500 Rh6AG030200 Rh7CG421600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 381
AccB7I CCANNNNNTGG 1 cut(s) 99
AciI CCGC 1 cut(s) 393
AcsI RAATTY 1 cut(s) 303
AcuI CTGAAG 2 cut(s) 60, 191
AfaI GTAC 2 cut(s) 162, 338
AfeI AGCGCT 1 cut(s) 251
AfiI CCNNNNNNNGG 1 cut(s) 99
AflIII ACRYGT 1 cut(s) 157
AgsI TTSAA 4 cut(s) 36, 152, 229, 287
AjiI CACGTC 1 cut(s) 136
AluBI AGCT 2 cut(s) 315, 344
AluI AGCT 2 cut(s) 315, 344
Alw21I GWGCWC 1 cut(s) 317
Aor51HI AGCGCT 1 cut(s) 251
AoxI GGCC 1 cut(s) 65
ApeKI GCWGC 1 cut(s) 344
ApoI RAATTY 1 cut(s) 303
AspLEI GCGC 1 cut(s) 252
AsuHPI GGTGA 2 cut(s) 116, 195
BanII GRGCYC 1 cut(s) 317
BarI GAAGNNNNNNTAC 2 cut(s) 279, 311
Bbv12I GWGCWC 1 cut(s) 317
BbvI GCAGC 1 cut(s) 331
BccI CCATC 2 cut(s) 31, 69
BfoI RGCGCY 1 cut(s) 253
BisI GCNGC 1 cut(s) 345
BlsI GCNGC 1 cut(s) 346
BmgBI CACGTC 1 cut(s) 136
BmsI GCATC 2 cut(s) 130, 180
Bpu10I CCTNAGC 2 cut(s) 69, 253
Bsa29I ATCGAT 1 cut(s) 237
BsaBI GATNNNNATC 1 cut(s) 60
BsaXI ACNNNNNCTCC 2 cut(s) 73, 103
Bsc4I CCNNNNNNNGG 1 cut(s) 99
Bse8I GATNNNNATC 1 cut(s) 60
BseCI ATCGAT 1 cut(s) 237
BseGI GGATG 3 cut(s) 145, 195, 334
BseJI GATNNNNATC 1 cut(s) 60
BseLI CCNNNNNNNGG 1 cut(s) 99
BseXI GCAGC 1 cut(s) 331
BseYI CCCAGC 1 cut(s) 92
BshFI GGCC 1 cut(s) 67
BshVI ATCGAT 1 cut(s) 237
BsiHKAI GWGCWC 1 cut(s) 317
BslI CCNNNNNNNGG 1 cut(s) 99
BsnI GGCC 1 cut(s) 67
Bsp1286I GDGCHC 1 cut(s) 317
Bsp1407I TGTACA 2 cut(s) 160, 336
Bsp143I GATC 1 cut(s) 234
BspACI CCGC 1 cut(s) 393
BspANI GGCC 1 cut(s) 67
BspDI ATCGAT 1 cut(s) 237
BspQI GCTCTTC 1 cut(s) 354
BsrGI TGTACA 2 cut(s) 160, 336
BssMI GATC 1 cut(s) 234
Bst6I CTCTTC 1 cut(s) 354
BstAUI TGTACA 2 cut(s) 160, 336
BstDEI CTNAG 3 cut(s) 69, 253, 365
BstEII GGTNACC 1 cut(s) 104
BstF5I GGATG 3 cut(s) 145, 195, 334
BstH2I RGCGCY 1 cut(s) 253
BstHHI GCGC 1 cut(s) 252
BstKTI GATC 1 cut(s) 237
BstMBI GATC 1 cut(s) 234
BstNSI RCATGY 1 cut(s) 161
BstPI GGTNACC 1 cut(s) 104
BstV1I GCAGC 1 cut(s) 331
Bsu15I ATCGAT 1 cut(s) 237
BsuRI GGCC 1 cut(s) 67
BsuTUI ATCGAT 1 cut(s) 237
BtrI CACGTC 1 cut(s) 136
BtsCI GGATG 3 cut(s) 145, 195, 334
CfoI GCGC 1 cut(s) 252
ClaI ATCGAT 1 cut(s) 237
Csp6I GTAC 2 cut(s) 161, 337
CviAII CATG 2 cut(s) 158, 390
CviJI RGCY 5 cut(s) 67, 73, 80, 315, 344
CviKI_1 RGCY 5 cut(s) 67, 73, 80, 315, 344
CviQI GTAC 2 cut(s) 161, 337
DdeI CTNAG 3 cut(s) 69, 253, 365
DpnI GATC 1 cut(s) 236
DpnII GATC 1 cut(s) 234
Eam1104I CTCTTC 1 cut(s) 354
EarI CTCTTC 1 cut(s) 354
Ecl136II GAGCTC 1 cut(s) 315
Eco24I GRGCYC 1 cut(s) 317
Eco47III AGCGCT 1 cut(s) 251
Eco53kI GAGCTC 1 cut(s) 315
Eco57I CTGAAG 2 cut(s) 60, 191
Eco91I GGTNACC 1 cut(s) 104
EcoICRI GAGCTC 1 cut(s) 315
EcoO65I GGTNACC 1 cut(s) 104
EcoT38I GRGCYC 1 cut(s) 317
FaeI CATG 2 cut(s) 161, 393
FaiI YATR 5 cut(s) 123, 159, 321, 381, 391
FalI AAGNNNNNCTT 2 cut(s) 215, 247
FatI CATG 2 cut(s) 157, 389
Fnu4HI GCNGC 1 cut(s) 345
FokI GGATG 3 cut(s) 152, 202, 341
FriOI GRGCYC 1 cut(s) 317
Fsp4HI GCNGC 1 cut(s) 345
GlaI GCGC 1 cut(s) 251
GluI GCNGC 1 cut(s) 345
GsaI CCCAGC 1 cut(s) 96
HaeII RGCGCY 1 cut(s) 253
HaeIII GGCC 1 cut(s) 67
HhaI GCGC 1 cut(s) 252
Hin1II CATG 2 cut(s) 161, 393
Hin6I GCGC 1 cut(s) 250
HinP1I GCGC 1 cut(s) 250
HphI GGTGA 2 cut(s) 116, 195
Hpy166II GTNNAC 2 cut(s) 296, 339
Hpy8I GTNNAC 2 cut(s) 296, 339
HpyAV CCTTC 3 cut(s) 84, 166, 180
HpyCH4IV ACGT 1 cut(s) 135
HpyF3I CTNAG 3 cut(s) 69, 253, 365
HpySE526I ACGT 1 cut(s) 135
Hsp92II CATG 2 cut(s) 161, 393
HspAI GCGC 1 cut(s) 250
Kzo9I GATC 1 cut(s) 234
LguI GCTCTTC 1 cut(s) 354
LpnPI CCDG 3 cut(s) 106, 219, 347
Lsp1109I GCAGC 1 cut(s) 331
LweI GCATC 2 cut(s) 130, 180
MaeII ACGT 1 cut(s) 135
MaeIII GTNAC 1 cut(s) 104
MalI GATC 1 cut(s) 236
MboI GATC 1 cut(s) 234
MboII GAAGA 4 cut(s) 24, 188, 299, 341
MhlI GDGCHC 1 cut(s) 317
MluCI AATT 2 cut(s) 282, 303
MspA1I CMGCKG 1 cut(s) 344
NdeII GATC 1 cut(s) 234
NlaIII CATG 2 cut(s) 161, 393
NmuCI GTSAC 1 cut(s) 104
NspI RCATGY 1 cut(s) 161
PciI ACATGT 1 cut(s) 157
PciSI GCTCTTC 1 cut(s) 354
PflMI CCANNNNNTGG 1 cut(s) 99
PkrI GCNGC 1 cut(s) 346
PscI ACATGT 1 cut(s) 157
PsiI TTATAA 1 cut(s) 381
Psp124BI GAGCTC 1 cut(s) 317
PspEI GGTNACC 1 cut(s) 104
PspFI CCCAGC 1 cut(s) 92
PsrI GAACNNNNNNTAC 2 cut(s) 144, 176
PvuII CAGCTG 1 cut(s) 344
RsaI GTAC 2 cut(s) 162, 338
RsaNI GTAC 2 cut(s) 161, 337
SacI GAGCTC 1 cut(s) 317
SapI GCTCTTC 1 cut(s) 354
SatI GCNGC 1 cut(s) 345
Sau3AI GATC 1 cut(s) 234
SduI GDGCHC 1 cut(s) 317
SetI ASST 7 cut(s) 138, 208, 259, 317, 336, 346, 379
SfaNI GCATC 2 cut(s) 130, 180
Sse9I AATT 2 cut(s) 282, 303
SsiI CCGC 1 cut(s) 393
SstI GAGCTC 1 cut(s) 317
TaiI ACGT 1 cut(s) 138
TaqI TCGA 2 cut(s) 237, 358
TasI AATT 2 cut(s) 282, 303
TatI WGTACW 2 cut(s) 160, 336
TseFI GTSAC 1 cut(s) 104
TseI GCWGC 1 cut(s) 344
Tsp45I GTSAC 1 cut(s) 104
TspDTI ATGAA 2 cut(s) 294, 378
Van91I CCANNNNNTGG 1 cut(s) 99
XapI RAATTY 1 cut(s) 303
XceI RCATGY 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.