Rh5BG405500

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0016832
Physical Location & Seq
Reverse (-)
65764378 .. 65777374
12997 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG405500.1

Sequence Viewer

Length: 441 bp
ATGGAAGCGCGAACAAAAGCAAAGCAGCACTTACACCTCTCTTCAACTCACACAAGCTGTTCATACAGAAAAATGTCTCCCCAAGTTTTAGCATCTCAAGCTCAAAGGCCAGATACCGTTGCTCATATTAAGCGACCTTCAACTAATTATGCCCCAAGCATTTGGGGTGATCATTTTCTCTCTTATGCTACCATGGAAGTAAACATTGAACTTGAGCAGCACGTCCGAGAACTGAAAGAAGAGGTGAAAAGCATGCTAATGGATCCCGTTAAAAACCCTTCACAACAATTGGACTTGGTTGATGACATTCAACGCCTAGGCGTGTCCTATCATTTTGAAAATGAGATTGATGGAATTTTGAAACAAATTCACAATAACTACTCTTCTAGTAGTGATGATGACCTTTACAGTACTGCTCTCCGTTTTCGATTGTTGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

146

Amino Acids

16.86

Weight (kDa)

6.43

Isoelectric Point (pI)

58.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 54 - 146 2.4e-26 Terpene synthase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016832)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g27941
prunus_persica Prupe.4G238800_v2.0.a1
pyrus_communis pycom03g15650 pycom12g15550 pycom12g15650
rosa_chinensis RchiOBHm_Chr4g0399341
rosa_laevigata RLG00000035298
rosa_roxburghii Rroxscaffold_5G00344270
rosa_rugosa Rorug01G0225900 Rorug04G0016800
rosa_samantha Rh1AG240000 Rh5BG405500 Rh6AG030200 Rh7CG421600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 10
AclWI GGATC 2 cut(s) 257, 270
AcsI RAATTY 2 cut(s) 354, 366
AfaI GTAC 1 cut(s) 412
AgsI TTSAA 6 cut(s) 45, 141, 209, 311, 338, 361
AjiI CACGTC 1 cut(s) 223
AluBI AGCT 2 cut(s) 57, 101
AluI AGCT 2 cut(s) 57, 101
Alw26I GTCTC 1 cut(s) 81
AlwI GGATC 2 cut(s) 257, 270
AoxI GGCC 1 cut(s) 107
ApeKI GCWGC 2 cut(s) 25, 217
ApoI RAATTY 2 cut(s) 354, 366
AspA2I CCTAGG 1 cut(s) 316
AspLEI GCGC 1 cut(s) 10
AsuHPI GGTGA 2 cut(s) 179, 256
AvrII CCTAGG 1 cut(s) 316
BamHI GGATCC 1 cut(s) 262
BbvI GCAGC 2 cut(s) 37, 229
BccI CCATC 1 cut(s) 344
BclI TGATCA 1 cut(s) 169
BcoDI GTCTC 1 cut(s) 81
BfaI CTAG 2 cut(s) 317, 387
BisI GCNGC 2 cut(s) 26, 218
BlnI CCTAGG 1 cut(s) 316
BlsI GCNGC 2 cut(s) 27, 219
BmcAI AGTACT 1 cut(s) 412
BmgBI CACGTC 1 cut(s) 223
BmiI GGNNCC 1 cut(s) 264
BmsI GCATC 1 cut(s) 101
BpuEI CTTGAG 2 cut(s) 81, 233
BsaJI CCNNGG 2 cut(s) 192, 316
BseDI CCNNGG 2 cut(s) 192, 316
BseXI GCAGC 2 cut(s) 37, 229
Bsh1236I CGCG 1 cut(s) 10
BshFI GGCC 1 cut(s) 109
BsmAI GTCTC 1 cut(s) 81
BsnI GGCC 1 cut(s) 109
Bsp143I GATC 2 cut(s) 169, 262
Bsp19I CCATGG 1 cut(s) 192
BspANI GGCC 1 cut(s) 109
BspFNI CGCG 1 cut(s) 10
BspLI GGNNCC 1 cut(s) 264
BspPI GGATC 2 cut(s) 257, 270
BssECI CCNNGG 2 cut(s) 192, 316
BssMI GATC 2 cut(s) 169, 262
BssT1I CCWWGG 2 cut(s) 192, 316
Bst4CI ACNGT 2 cut(s) 118, 410
Bst6I CTCTTC 3 cut(s) 46, 234, 388
BstC8I GCNNGC 1 cut(s) 254
BstDSI CCRYGG 1 cut(s) 192
BstFNI CGCG 1 cut(s) 10
BstHHI GCGC 1 cut(s) 10
BstKTI GATC 2 cut(s) 172, 265
BstMAI GTCTC 1 cut(s) 81
BstMBI GATC 2 cut(s) 169, 262
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstNSI RCATGY 1 cut(s) 256
BstUI CGCG 1 cut(s) 10
BstV1I GCAGC 2 cut(s) 37, 229
BstX2I RGATCY 1 cut(s) 262
BstXI CCANNNNNNTGG 1 cut(s) 162
BstYI RGATCY 1 cut(s) 262
BsuRI GGCC 1 cut(s) 109
BtgI CCRYGG 1 cut(s) 192
BtrI CACGTC 1 cut(s) 223
Cac8I GCNNGC 1 cut(s) 254
CfoI GCGC 1 cut(s) 10
Csp6I GTAC 1 cut(s) 411
CviAII CATG 2 cut(s) 193, 253
CviJI RGCY 3 cut(s) 57, 101, 109
CviKI_1 RGCY 3 cut(s) 57, 101, 109
CviQI GTAC 1 cut(s) 411
DpnI GATC 2 cut(s) 171, 264
DpnII GATC 2 cut(s) 169, 262
Eam1104I CTCTTC 3 cut(s) 46, 234, 388
EarI CTCTTC 3 cut(s) 46, 234, 388
Eco130I CCWWGG 2 cut(s) 192, 316
EcoT14I CCWWGG 2 cut(s) 192, 316
ErhI CCWWGG 2 cut(s) 192, 316
FaeI CATG 2 cut(s) 196, 256
FaiI YATR 6 cut(s) 64, 126, 150, 186, 194, 254
FalI AAGNNNNNCTT 2 cut(s) 14, 46
FatI CATG 2 cut(s) 192, 252
FbaI TGATCA 1 cut(s) 169
Fnu4HI GCNGC 2 cut(s) 26, 218
Fsp4HI GCNGC 2 cut(s) 26, 218
FspBI CTAG 2 cut(s) 317, 387
GlaI GCGC 1 cut(s) 9
GluI GCNGC 2 cut(s) 26, 218
HaeIII GGCC 1 cut(s) 109
HhaI GCGC 1 cut(s) 10
Hin1II CATG 2 cut(s) 196, 256
Hin6I GCGC 1 cut(s) 8
HinP1I GCGC 1 cut(s) 8
HphI GGTGA 2 cut(s) 179, 256
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 1 cut(s) 227
Hpy8I GTNNAC 1 cut(s) 202
HpyAV CCTTC 2 cut(s) 147, 288
HpyCH4III ACNGT 2 cut(s) 118, 410
HpyCH4IV ACGT 1 cut(s) 222
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
HpySE526I ACGT 1 cut(s) 222
Hsp92II CATG 2 cut(s) 196, 256
HspAI GCGC 1 cut(s) 8
Ksp22I TGATCA 1 cut(s) 169
Kzo9I GATC 2 cut(s) 169, 262
LpnPI CCDG 1 cut(s) 123
Lsp1109I GCAGC 2 cut(s) 37, 229
LweI GCATC 1 cut(s) 101
MaeI CTAG 2 cut(s) 317, 387
MaeII ACGT 1 cut(s) 222
MalI GATC 2 cut(s) 171, 264
MboI GATC 2 cut(s) 169, 262
MboII GAAGA 3 cut(s) 33, 251, 375
MfeI CAATTG 1 cut(s) 287
MflI RGATCY 1 cut(s) 262
MluCI AATT 4 cut(s) 145, 287, 354, 366
MnlI CCTC 2 cut(s) 47, 235
MseI TTAA 2 cut(s) 129, 270
MslI CAYNNNNRTG 1 cut(s) 257
MunI CAATTG 1 cut(s) 287
MvnI CGCG 1 cut(s) 10
MwoI GCNNNNNNNGC 1 cut(s) 98
NcoI CCATGG 1 cut(s) 192
NdeII GATC 2 cut(s) 169, 262
NlaIII CATG 2 cut(s) 196, 256
NlaIV GGNNCC 1 cut(s) 264
NspI RCATGY 1 cut(s) 256
PaeI GCATGC 1 cut(s) 256
PkrI GCNGC 2 cut(s) 27, 219
PspN4I GGNNCC 1 cut(s) 264
PsuI RGATCY 1 cut(s) 262
RsaI GTAC 1 cut(s) 412
RsaNI GTAC 1 cut(s) 411
RseI CAYNNNNRTG 1 cut(s) 257
SaqAI TTAA 2 cut(s) 129, 270
SatI GCNGC 2 cut(s) 26, 218
Sau3AI GATC 2 cut(s) 169, 262
ScaI AGTACT 1 cut(s) 412
SetI ASST 7 cut(s) 39, 59, 103, 139, 225, 246, 405
SfaNI GCATC 1 cut(s) 101
SmiMI CAYNNNNRTG 1 cut(s) 257
SmlI CTYRAG 2 cut(s) 96, 212
SmoI CTYRAG 2 cut(s) 96, 212
SphI GCATGC 1 cut(s) 256
Sse9I AATT 4 cut(s) 145, 287, 354, 366
SspMI CTAG 2 cut(s) 317, 387
StyI CCWWGG 2 cut(s) 192, 316
TaaI ACNGT 2 cut(s) 118, 410
TaiI ACGT 1 cut(s) 225
TaqI TCGA 1 cut(s) 427
TasI AATT 4 cut(s) 145, 287, 354, 366
TatI WGTACW 1 cut(s) 410
Tru1I TTAA 2 cut(s) 129, 270
Tru9I TTAA 2 cut(s) 129, 270
TseI GCWGC 2 cut(s) 25, 217
TspDTI ATGAA 1 cut(s) 51
TspGWI ACGGA 1 cut(s) 410
XapI RAATTY 2 cut(s) 354, 366
XceI RCATGY 1 cut(s) 256
XmaJI CCTAGG 1 cut(s) 316
XspI CTAG 2 cut(s) 317, 387
ZrmI AGTACT 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.