Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0011796

Physical Location & Seq

Genomic Coordinates Reverse (-)

18265015 .. 18265751

Gene Structure 737 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGAGAGCACCGACTCGTCCGCGGGCTCACAACAGCAACAGCAGCAGCAGCCGCAGCCGCAGCAGCAGCAGCCGCAGCCGCAGCCGCCACCTCCGCAGCCAAACCTGCCGCCCGGGTTCCGCTTCCACCCGACGGACGAAGAGCTAGTCGTCCACTATCTCAAGAAAAAGGCCACCTCCGCTCCCCTCCCGGTTGCTATCATCGCTGAAGTCGACCTTTACAAGTTCGACCCCTGGGAGCTCCCAGCTAAGGCTACGTTTGGAGAGCAAGAGTGGTATTTTTTCAGTCCTAGGGACCGGAAGTACCCGAACGGAGCGAGACCCAATAGGGCAGCGACTTCCGGGTATTGGAAAGCGACGGGGACTGATAAGCCGGTGCTGACTTCCGGCGGTACTCAGAAAGTTGGTGTGAAAAAAGCACTTGTGTTCTATGGAGGAAAACCCCCAAAAGGAATTAAAACCAATTGGATTATGCACGAGTACAGGCTTGCTGATAACAAGCCCAACAACAAGCCACCTCGGTGTGACTTGGGCAACAAGAAGAACTCCTTGAGGGTAATGCAACACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009753 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045995 GO:0048229 GO:0048316 GO:0048317 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048466 GO:0048467 GO:0048481 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080060 GO:0080090 GO:0090567 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

190

Amino Acids

21.3

Weight (kDa)

9.68

Isoelectric Point (pI)

54.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	37 - 163	3.8e-52	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52880 AT3G15510
fragaria_vesca	FvH4_3g20700
malus_domestica	MD03G1222600.v1.1 MD11G1239900.v1.1
prunus_persica	Prupe.4G187100_v2.0.a1 Prupe.4G187100_v2.0.a1
pyrus_communis	pycom03g17130 pycom11g21170
rosa_chinensis	RchiOBHm_Chr5g0034821
rosa_laevigata	RLG00000033580
rosa_multiflora	Rmu_sc0002460.1_g000042
rosa_roxburghii	Rroxscaffold_1G00045490
rosa_rugosa	Rorug05G0148600
rosa_samantha	Rh5AG241000 Rh5BG241100 Rh5CG272100 Rh5DG249600
rosa_wichuraiana	Rw5G022030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	114
AccBSI	CCGCTC	1 cut(s)	182
AccI	GTMKAC	1 cut(s)	213
AccII	CGCG	1 cut(s)	23
AcuI	CTGAAG	1 cut(s)	228
AfaI	GTAC	3 cut(s)	305, 394, 482
AfiI	CCNNNNNNNGG	4 cut(s)	133, 250, 348, 449
AjnI	CCWGG	1 cut(s)	233
AleI	CACNNNNGTG	1 cut(s)	520
AluBI	AGCT	3 cut(s)	145, 241, 248
AluI	AGCT	3 cut(s)	145, 241, 248
Alw21I	GWGCWC	2 cut(s)	11, 243
Alw26I	GTCTC	1 cut(s)	313
Ama87I	CYCGRG	1 cut(s)	113
AoxI	GGCC	1 cut(s)	171
ArsI	GACNNNNNNTTYG	2 cut(s)	132, 164
AspA2I	CCTAGG	1 cut(s)	290
AspS9I	GGNCC	1 cut(s)	295
AsuC2I	CCSGG	4 cut(s)	114, 115, 191, 343
AvaI	CYCGRG	1 cut(s)	113
AvaII	GGWCC	1 cut(s)	295
AvrII	CCTAGG	1 cut(s)	290
BanII	GRGCYC	2 cut(s)	29, 243
BauI	CACGAG	1 cut(s)	476
Bbv12I	GWGCWC	2 cut(s)	11, 243
BciT130I	CCWGG	1 cut(s)	235
BcnI	CCSGG	4 cut(s)	114, 115, 191, 343
BcoDI	GTCTC	1 cut(s)	313
BfaI	CTAG	2 cut(s)	146, 291
BfuAI	ACCTGC	1 cut(s)	114
BlnI	CCTAGG	1 cut(s)	290
Bme1390I	CCNGG	5 cut(s)	114, 115, 191, 235, 343
Bme18I	GGWCC	1 cut(s)	295
BmeT110I	CYCGRG	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	295
BmiI	GGNNCC	2 cut(s)	119, 296
BmrFI	CCNGG	5 cut(s)	114, 115, 191, 235, 343
Bpu10I	CCTNAGC	1 cut(s)	249
BpuEI	CTTGAG	1 cut(s)	146
BpuMI	CCSGG	4 cut(s)	114, 115, 191, 343
BsaI	GGTCTC	1 cut(s)	313
BsaJI	CCNNGG	6 cut(s)	21, 113, 233, 234, 290, 518
BsaWI	WCCGGW	1 cut(s)	297
BsaXI	ACNNNNNCTCC	2 cut(s)	166, 196
Bsc4I	CCNNNNNNNGG	4 cut(s)	133, 250, 348, 449
Bse118I	RCCGGY	1 cut(s)	373
BseBI	CCWGG	1 cut(s)	235
BseDI	CCNNGG	6 cut(s)	21, 113, 233, 234, 290, 518
BseLI	CCNNNNNNNGG	4 cut(s)	133, 250, 348, 449
BseMII	CTCAG	1 cut(s)	410
BseYI	CCCAGC	1 cut(s)	244
Bsh1236I	CGCG	1 cut(s)	23
BshFI	GGCC	1 cut(s)	173
BsiHKAI	GWGCWC	2 cut(s)	11, 243
BsiHKCI	CYCGRG	1 cut(s)	113
BsiSI	CCGG	6 cut(s)	114, 191, 298, 342, 374, 387
BslFI	GGGAC	2 cut(s)	308, 376
BslI	CCNNNNNNNGG	4 cut(s)	133, 250, 348, 449
BsmAI	GTCTC	1 cut(s)	313
BsmFI	GGGAC	2 cut(s)	308, 376
BsnI	GGCC	1 cut(s)	173
Bso31I	GGTCTC	1 cut(s)	313
BsoBI	CYCGRG	1 cut(s)	113
Bsp1286I	GDGCHC	3 cut(s)	11, 29, 243
BspANI	GGCC	1 cut(s)	173
BspCNI	CTCAG	1 cut(s)	409
BspFNI	CGCG	1 cut(s)	23
BspLI	GGNNCC	2 cut(s)	119, 296
BspMI	ACCTGC	1 cut(s)	114
BspQI	GCTCTTC	1 cut(s)	135
BspTNI	GGTCTC	1 cut(s)	313
BsrBI	CCGCTC	1 cut(s)	182
BsrFI	RCCGGY	1 cut(s)	373
BssAI	RCCGGY	1 cut(s)	373
BssECI	CCNNGG	6 cut(s)	21, 113, 233, 234, 290, 518
BssSI	CACGAG	1 cut(s)	476
BssT1I	CCWWGG	1 cut(s)	290
Bst2BI	CACGAG	1 cut(s)	476
Bst2UI	CCWGG	1 cut(s)	235
Bst6I	CTCTTC	1 cut(s)	135
BstC8I	GCNNGC	2 cut(s)	25, 489
BstDEI	CTNAG	2 cut(s)	249, 396
BstDSI	CCRYGG	1 cut(s)	21
BstFNI	CGCG	1 cut(s)	23
BstMAI	GTCTC	1 cut(s)	313
BstNI	CCWGG	1 cut(s)	235
BstSCI	CCNGG	5 cut(s)	112, 113, 189, 233, 341
BstUI	CGCG	1 cut(s)	23
BsuRI	GGCC	1 cut(s)	173
BtgI	CCRYGG	1 cut(s)	21
BtgZI	GCGATG	1 cut(s)	187
BveI	ACCTGC	1 cut(s)	114
Cac8I	GCNNGC	2 cut(s)	25, 489
Cfr10I	RCCGGY	1 cut(s)	373
Cfr13I	GGNCC	1 cut(s)	295
Cfr42I	CCGCGG	1 cut(s)	24
Cfr9I	CCCGGG	1 cut(s)	113
Csp6I	GTAC	3 cut(s)	304, 393, 481
CviQI	GTAC	3 cut(s)	304, 393, 481
DdeI	CTNAG	2 cut(s)	249, 396
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
Ecl136II	GAGCTC	1 cut(s)	241
Eco130I	CCWWGG	1 cut(s)	290
Eco24I	GRGCYC	2 cut(s)	29, 243
Eco31I	GGTCTC	1 cut(s)	313
Eco47I	GGWCC	1 cut(s)	295
Eco53kI	GAGCTC	1 cut(s)	241
Eco57I	CTGAAG	1 cut(s)	228
Eco88I	CYCGRG	1 cut(s)	113
EcoICRI	GAGCTC	1 cut(s)	241
EcoRII	CCWGG	1 cut(s)	233
EcoT14I	CCWWGG	1 cut(s)	290
EcoT38I	GRGCYC	2 cut(s)	29, 243
ErhI	CCWWGG	1 cut(s)	290
FaiI	YATR	2 cut(s)	432, 473
FalI	AAGNNNNNCTT	4 cut(s)	201, 233, 533, 565
FaqI	GGGAC	2 cut(s)	308, 376
FauI	CCCGC	1 cut(s)	16
FblI	GTMKAC	1 cut(s)	213
FriOI	GRGCYC	2 cut(s)	29, 243
FspBI	CTAG	2 cut(s)	146, 291
GsaI	CCCAGC	1 cut(s)	248
HaeIII	GGCC	1 cut(s)	173
HapII	CCGG	6 cut(s)	114, 191, 298, 342, 374, 387
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HinfI	GANTC	1 cut(s)	14
HpaII	CCGG	6 cut(s)	114, 191, 298, 342, 374, 387
Hpy166II	GTNNAC	2 cut(s)	154, 214
Hpy188I	TCNGA	1 cut(s)	399
Hpy188III	TCNNGA	1 cut(s)	163
Hpy8I	GTNNAC	2 cut(s)	154, 214
Hpy99I	CGWCG	2 cut(s)	136, 361
HpyCH4IV	ACGT	1 cut(s)	257
HpyCH4V	TGCA	2 cut(s)	475, 562
HpyF3I	CTNAG	2 cut(s)	249, 396
HpySE526I	ACGT	1 cut(s)	257
KspI	CCGCGG	1 cut(s)	24
LguI	GCTCTTC	1 cut(s)	135
LmnI	GCTCC	4 cut(s)	187, 238, 246, 314
MaeI	CTAG	2 cut(s)	146, 291
MaeII	ACGT	1 cut(s)	257
MaeIII	GTNAC	1 cut(s)	524
MbiI	CCGCTC	1 cut(s)	182
MboII	GAAGA	2 cut(s)	152, 553
MfeI	CAATTG	1 cut(s)	463
MhlI	GDGCHC	3 cut(s)	11, 29, 243
MluCI	AATT	2 cut(s)	453, 463
MlyI	GAGTC	1 cut(s)	8
MnlI	CCTC	6 cut(s)	102, 187, 197, 428, 528, 546
MseI	TTAA	1 cut(s)	456
MslI	CAYNNNNRTG	1 cut(s)	520
MspA1I	CMGCKG	1 cut(s)	23
MspI	CCGG	6 cut(s)	114, 191, 298, 342, 374, 387
MspR9I	CCNGG	5 cut(s)	114, 115, 191, 235, 343
MunI	CAATTG	1 cut(s)	463
MvaI	CCWGG	1 cut(s)	235
MvnI	CGCG	1 cut(s)	23
NciI	CCSGG	4 cut(s)	114, 115, 191, 343
NlaIV	GGNNCC	2 cut(s)	119, 296
NmuCI	GTSAC	1 cut(s)	524
OliI	CACNNNNGTG	1 cut(s)	520
PasI	CCCWGGG	1 cut(s)	234
PciSI	GCTCTTC	1 cut(s)	135
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PleI	GAGTC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	8
Psp124BI	GAGCTC	1 cut(s)	243
Psp6I	CCWGG	1 cut(s)	233
PspFI	CCCAGC	1 cut(s)	244
PspGI	CCWGG	1 cut(s)	233
PspN4I	GGNNCC	2 cut(s)	119, 296
PspPI	GGNCC	1 cut(s)	295
RsaI	GTAC	3 cut(s)	305, 394, 482
RsaNI	GTAC	3 cut(s)	304, 393, 481
RseI	CAYNNNNRTG	1 cut(s)	520
SacI	GAGCTC	1 cut(s)	243
SacII	CCGCGG	1 cut(s)	24
SalI	GTCGAC	1 cut(s)	212
SapI	GCTCTTC	1 cut(s)	135
SaqAI	TTAA	1 cut(s)	456
Sau96I	GGNCC	1 cut(s)	295
SchI	GAGTC	1 cut(s)	8
ScrFI	CCNGG	5 cut(s)	114, 115, 191, 235, 343
SduI	GDGCHC	3 cut(s)	11, 29, 243
SetI	ASST	9 cut(s)	94, 108, 147, 179, 219, 243, 250, 260, 520
Sfr303I	CCGCGG	1 cut(s)	24
SgrBI	CCGCGG	1 cut(s)	24
SinI	GGWCC	1 cut(s)	295
SmaI	CCCGGG	1 cut(s)	115
SmiMI	CAYNNNNRTG	1 cut(s)	520
SmlI	CTYRAG	2 cut(s)	161, 550
SmoI	CTYRAG	2 cut(s)	161, 550
Sse9I	AATT	2 cut(s)	453, 463
SspMI	CTAG	2 cut(s)	146, 291
SstI	GAGCTC	1 cut(s)	243
StyD4I	CCNGG	5 cut(s)	112, 113, 189, 233, 341
StyI	CCWWGG	1 cut(s)	290
TaiI	ACGT	1 cut(s)	260
TaqI	TCGA	2 cut(s)	213, 228
TasI	AATT	2 cut(s)	453, 463
TatI	WGTACW	1 cut(s)	480
TauI	GCSGC	6 cut(s)	55, 61, 76, 82, 88, 112
Tru1I	TTAA	1 cut(s)	456
Tru9I	TTAA	1 cut(s)	456
TseFI	GTSAC	1 cut(s)	524
Tsp45I	GTSAC	1 cut(s)	524
TspGWI	ACGGA	2 cut(s)	149, 327
TspMI	CCCGGG	1 cut(s)	113
VpaK11BI	GGWCC	1 cut(s)	295
XmaI	CCCGGG	1 cut(s)	113
XmaJI	CCTAGG	1 cut(s)	290
XmiI	GTMKAC	1 cut(s)	213
XspI	CTAG	2 cut(s)	146, 291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.