pycom03g18790

presynapse organization

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0018133
Physical Location & Seq
Forward (+)
19655151 .. 19656154
1004 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g18790.3

Sequence Viewer

Length: 618 bp
ATGCCGCTCATTGCAACTTGCAGTAATTTCCGTCGCCAGGGAATGTGCCGACGCCTTCTGACTGCGATTGAAGAGATGCTAATATCTTTTAAGGTTGAAAAGCTTGTCGTAGCTGCCATTCCCGATTTGGTAGAGACGTGGACTCAGGGTTTTGGCTTTGTACCCATAGAAGGCGACGAGAAGCGTAGTTTGAACAAGATCAACTTGATGGTCTTTCCTGGAACAATGCTGCTCAAAAAACCCTTGTACGAAAATCAAAAAGCACATAGGCATTCAGAAGCAGAAATGGAAACCAACAGAGTTGTTCCTGATGCGGAGTTAGAAGTCGGTTCTGAAGCTGAATTCAACGATGCTATCCAGCCATCGGAGGGAACCGGTTGTCAGATCGAAGAAGGCTGGGAATCTGAACTTGGTACCAAGGAAGCAGAAGTTATGGGAAGCAAGAATGTGCAACGTGAAGCCGAAGGAAGCACTTTGCAGGGCGAATTTTCAAAGCTGTCTAGTGAAGAAGTGGCAGATCTAACATTAGGAAATAGTGACGGGCGTGAAACCGTGACTAATGTTGAATCCTTGAAAATGTATGATGAAATACAGCAGCAGCTTCCTTTGGACGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0004402 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0005911 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008080 GO:0008134 GO:0008150 GO:0008152 GO:0009506 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010385 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016070 GO:0016407 GO:0016410 GO:0016458 GO:0016569 GO:0016570 GO:0016573 GO:0016581 GO:0016740 GO:0016746 GO:0016747 GO:0017053 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0030054 GO:0031047 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0032993 GO:0034212 GO:0034641 GO:0036211 GO:0042393 GO:0042826 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043543 GO:0043966 GO:0043971 GO:0043972 GO:0044030 GO:0044154 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044728 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050808 GO:0051052 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0055044 GO:0060255 GO:0061733 GO:0065007 GO:0070013 GO:0070491 GO:0070603 GO:0071704 GO:0071840 GO:0072553 GO:0080090 GO:0080188 GO:0090304 GO:0090545 GO:0090568 GO:0097159 GO:0099172 GO:1901360 GO:1901363 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1904949 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jas PHD

Protein Analysis

206

Amino Acids

22.89

Weight (kDa)

4.54

Isoelectric Point (pI)

44.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018133)

Species Orthologous Gene IDs
pyrus_communis pycom03g18790
rosa_chinensis RchiOBHm_Chr2g0111451 RchiOBHm_Chr6g0271411
rosa_laevigata RLG00000030178
rosa_multiflora Rmu_co8021848.1_g000001 Rmu_sc0004705.1_g000022
rosa_roxburghii Rroxscaffold_2G00122740
rosa_samantha Rh5AG524400 Rh6DG515400
rosa_wichuraiana Rw1G023050 Rw4G031460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 413
AccB1I GGYRCC 1 cut(s) 413
AccBSI CCGCTC 1 cut(s) 7
AciI CCGC 2 cut(s) 5, 314
AcsI RAATTY 2 cut(s) 341, 485
AcuI CTGAAG 1 cut(s) 354
AcyI GRCGYC 1 cut(s) 52
AfaI GTAC 3 cut(s) 162, 248, 415
AfiI CCNNNNNNNGG 4 cut(s) 37, 170, 364, 368
AgeI ACCGGT 1 cut(s) 374
AgsI TTSAA 7 cut(s) 71, 98, 193, 346, 492, 566, 574
AjiI CACGTC 1 cut(s) 138
AjnI CCWGG 2 cut(s) 36, 217
AjuI GAANNNNNNNTTGG 2 cut(s) 393, 425
AluBI AGCT 5 cut(s) 103, 113, 338, 496, 601
AluI AGCT 5 cut(s) 103, 113, 338, 496, 601
Alw26I GTCTC 1 cut(s) 128
ApeKI GCWGC 4 cut(s) 113, 229, 595, 598
ApoI RAATTY 2 cut(s) 341, 485
AsiGI ACCGGT 1 cut(s) 374
Asp718I GGTACC 1 cut(s) 413
BanI GGYRCC 1 cut(s) 413
BbvI GCAGC 4 cut(s) 100, 216, 607, 610
BccI CCATC 2 cut(s) 202, 370
BciT130I CCWGG 2 cut(s) 38, 219
BcoDI GTCTC 1 cut(s) 128
BfaI CTAG 1 cut(s) 501
BglII AGATCT 1 cut(s) 517
BisI GCNGC 5 cut(s) 5, 114, 230, 596, 599
BlsI GCNGC 5 cut(s) 6, 115, 231, 597, 600
Bme1390I CCNGG 2 cut(s) 38, 219
BmgBI CACGTC 1 cut(s) 138
BmiI GGNNCC 2 cut(s) 373, 415
BmrFI CCNGG 2 cut(s) 38, 219
BmsI GCATC 3 cut(s) 66, 301, 340
BsaHI GRCGYC 1 cut(s) 52
BsaJI CCNNGG 2 cut(s) 37, 417
BsaWI WCCGGW 1 cut(s) 374
Bsc4I CCNNNNNNNGG 4 cut(s) 37, 170, 364, 368
Bse118I RCCGGY 1 cut(s) 374
Bse3DI GCAATG 1 cut(s) 9
BseBI CCWGG 2 cut(s) 38, 219
BseDI CCNNGG 2 cut(s) 37, 417
BseLI CCNNNNNNNGG 4 cut(s) 37, 170, 364, 368
BseMI GCAATG 1 cut(s) 9
BseMII CTCAG 1 cut(s) 158
BseXI GCAGC 4 cut(s) 100, 216, 607, 610
BseYI CCCAGC 1 cut(s) 396
BshNI GGYRCC 1 cut(s) 413
BshTI ACCGGT 1 cut(s) 374
BsiSI CCGG 1 cut(s) 375
BslI CCNNNNNNNGG 4 cut(s) 37, 170, 364, 368
BsmAI GTCTC 1 cut(s) 128
BsmBI CGTCTC 1 cut(s) 128
BsmI GAATGC 1 cut(s) 271
Bsp143I GATC 3 cut(s) 198, 384, 517
BspACI CCGC 2 cut(s) 5, 314
BspCNI CTCAG 1 cut(s) 157
BspLI GGNNCC 2 cut(s) 373, 415
BspT107I GGYRCC 1 cut(s) 413
BsrBI CCGCTC 1 cut(s) 7
BsrDI GCAATG 1 cut(s) 9
BsrFI RCCGGY 1 cut(s) 374
BssAI RCCGGY 1 cut(s) 374
BssECI CCNNGG 2 cut(s) 37, 417
BssMI GATC 3 cut(s) 198, 384, 517
BssNI GRCGYC 1 cut(s) 52
BssT1I CCWWGG 1 cut(s) 417
Bst2UI CCWGG 2 cut(s) 38, 219
Bst4CI ACNGT 1 cut(s) 553
Bst6I CTCTTC 1 cut(s) 66
BstACI GRCGYC 1 cut(s) 52
BstDEI CTNAG 1 cut(s) 144
BstKTI GATC 3 cut(s) 201, 387, 520
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 3 cut(s) 198, 384, 517
BstNI CCWGG 2 cut(s) 38, 219
BstSCI CCNGG 2 cut(s) 36, 217
BstV1I GCAGC 4 cut(s) 100, 216, 607, 610
BstX2I RGATCY 1 cut(s) 517
BstYI RGATCY 1 cut(s) 517
BtrI CACGTC 1 cut(s) 138
Cfr10I RCCGGY 1 cut(s) 374
CseI GACGC 1 cut(s) 60
Csp6I GTAC 3 cut(s) 161, 247, 414
CspAI ACCGGT 1 cut(s) 374
CviJI RGCY 9 cut(s) 103, 113, 156, 338, 361, 396, 461, 496, 601
CviKI_1 RGCY 9 cut(s) 103, 113, 156, 338, 361, 396, 461, 496, 601
CviQI GTAC 3 cut(s) 161, 247, 414
DdeI CTNAG 1 cut(s) 144
DpnI GATC 3 cut(s) 200, 386, 519
DpnII GATC 3 cut(s) 198, 384, 517
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Eco130I CCWWGG 1 cut(s) 417
Eco57I CTGAAG 1 cut(s) 354
EcoRI GAATTC 1 cut(s) 341
EcoRII CCWGG 2 cut(s) 36, 217
EcoT14I CCWWGG 1 cut(s) 417
ErhI CCWWGG 1 cut(s) 417
Esp3I CGTCTC 1 cut(s) 128
FaiI YATR 4 cut(s) 167, 267, 434, 582
FalI AAGNNNNNCTT 2 cut(s) 188, 220
Fnu4HI GCNGC 5 cut(s) 5, 114, 230, 596, 599
Fsp4HI GCNGC 5 cut(s) 5, 114, 230, 596, 599
FspBI CTAG 1 cut(s) 501
GluI GCNGC 5 cut(s) 5, 114, 230, 596, 599
GsaI CCCAGC 1 cut(s) 400
HapII CCGG 1 cut(s) 375
HgaI GACGC 1 cut(s) 60
Hin1I GRCGYC 1 cut(s) 52
HindIII AAGCTT 1 cut(s) 101
HinfI GANTC 3 cut(s) 142, 401, 566
HpaII CCGG 1 cut(s) 375
Hpy166II GTNNAC 1 cut(s) 141
Hpy188I TCNGA 6 cut(s) 60, 277, 334, 367, 384, 406
Hpy188III TCNNGA 2 cut(s) 122, 308
Hpy8I GTNNAC 1 cut(s) 141
Hpy99I CGWCG 3 cut(s) 36, 54, 179
HpyAV CCTTC 4 cut(s) 65, 164, 386, 458
HpyCH4III ACNGT 1 cut(s) 553
HpyCH4IV ACGT 2 cut(s) 137, 454
HpyCH4V TGCA 4 cut(s) 14, 21, 451, 478
HpyF3I CTNAG 1 cut(s) 144
HpySE526I ACGT 2 cut(s) 137, 454
Hsp92I GRCGYC 1 cut(s) 52
KpnI GGTACC 1 cut(s) 417
Kzo9I GATC 3 cut(s) 198, 384, 517
Lsp1109I GCAGC 4 cut(s) 100, 216, 607, 610
LweI GCATC 3 cut(s) 66, 301, 340
MaeI CTAG 1 cut(s) 501
MaeII ACGT 2 cut(s) 137, 454
MaeIII GTNAC 2 cut(s) 536, 553
MalI GATC 3 cut(s) 200, 386, 519
MbiI CCGCTC 1 cut(s) 7
MboI GATC 3 cut(s) 198, 384, 517
MboII GAAGA 3 cut(s) 83, 401, 518
MflI RGATCY 1 cut(s) 517
MluCI AATT 3 cut(s) 25, 341, 485
MlyI GAGTC 1 cut(s) 136
MnlI CCTC 1 cut(s) 361
MseI TTAA 1 cut(s) 90
MspI CCGG 1 cut(s) 375
MspR9I CCNGG 2 cut(s) 38, 219
Mva1269I GAATGC 1 cut(s) 271
MvaI CCWGG 2 cut(s) 38, 219
NdeII GATC 3 cut(s) 198, 384, 517
NlaIV GGNNCC 2 cut(s) 373, 415
NmuCI GTSAC 2 cut(s) 536, 553
PctI GAATGC 1 cut(s) 271
PfeI GAWTC 2 cut(s) 401, 566
PfoI TCCNGGA 1 cut(s) 217
PinAI ACCGGT 1 cut(s) 374
PkrI GCNGC 5 cut(s) 6, 115, 231, 597, 600
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
Psp6I CCWGG 2 cut(s) 36, 217
PspFI CCCAGC 1 cut(s) 396
PspGI CCWGG 2 cut(s) 36, 217
PspN4I GGNNCC 2 cut(s) 373, 415
PsuI RGATCY 1 cut(s) 517
RsaI GTAC 3 cut(s) 162, 248, 415
RsaNI GTAC 3 cut(s) 161, 247, 414
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 5 cut(s) 5, 114, 230, 596, 599
Sau3AI GATC 3 cut(s) 198, 384, 517
SchI GAGTC 1 cut(s) 136
ScrFI CCNGG 2 cut(s) 38, 219
SetI ASST 8 cut(s) 96, 105, 115, 140, 340, 457, 498, 603
SfaNI GCATC 3 cut(s) 66, 301, 340
Sse9I AATT 3 cut(s) 25, 341, 485
SsiI CCGC 2 cut(s) 5, 314
SspMI CTAG 1 cut(s) 501
StyD4I CCNGG 2 cut(s) 36, 217
StyI CCWWGG 1 cut(s) 417
TaaI ACNGT 1 cut(s) 553
TaiI ACGT 2 cut(s) 140, 457
TaqI TCGA 1 cut(s) 387
TasI AATT 3 cut(s) 25, 341, 485
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 2 cut(s) 401, 566
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TseFI GTSAC 2 cut(s) 536, 553
TseI GCWGC 4 cut(s) 113, 229, 595, 598
Tsp45I GTSAC 2 cut(s) 536, 553
TspDTI ATGAA 1 cut(s) 600
TspGWI ACGGA 1 cut(s) 20
XapI RAATTY 2 cut(s) 341, 485
XcmI CCANNNNNNNNNTGG 1 cut(s) 124
XspI CTAG 1 cut(s) 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.