Rroxscaffold_2G00122740

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
56157893 .. 56161711
3819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00122740.1

Sequence Viewer

Length: 276 bp
ATGCTAACCGATACCTATTTCTCTTGGATCTTGATCTCTTCGAGTCTCTCCTCCACTCTCCGAGTTCTTCACTTCTTCTTCGCTCTCTCAAATCATTCACGGACGAGGCTATACCAAGTCCGGCGTTGTCGGCATCACTCGGCCTTGCCGTGTCGCCACCGTCTCCATCGCCGAGACCATTGTGAGGTCGAAGATGGCTTGGATTTACGACCAGCGAGAGGAATGTCTCGGCTCGATTGCTGCGTCTCTTTTTCCATGACTGCTTCATTGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.72

Weight (kDa)

10.13

Isoelectric Point (pI)

52.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018133)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 35
AfiI CCNNNNNNNGG 2 cut(s) 184, 218
Alw26I GTCTC 5 cut(s) 50, 167, 168, 231, 250
AlwI GGATC 1 cut(s) 35
AoxI GGCC 1 cut(s) 141
ApeKI GCWGC 1 cut(s) 240
BbvI GCAGC 1 cut(s) 227
BccI CCATC 2 cut(s) 174, 188
BceAI ACGGC 1 cut(s) 133
BcoDI GTCTC 5 cut(s) 50, 167, 168, 231, 250
BisI GCNGC 1 cut(s) 241
BlsI GCNGC 1 cut(s) 242
BmsI GCATC 1 cut(s) 142
BsaBI GATNNNNATC 1 cut(s) 32
BsaI GGTCTC 1 cut(s) 168
Bsc4I CCNNNNNNNGG 2 cut(s) 184, 218
Bse8I GATNNNNATC 1 cut(s) 32
BseJI GATNNNNATC 1 cut(s) 32
BseLI CCNNNNNNNGG 2 cut(s) 184, 218
BseRI GAGGAG 1 cut(s) 40
BseXI GCAGC 1 cut(s) 227
BshFI GGCC 1 cut(s) 143
BsiSI CCGG 1 cut(s) 121
BslI CCNNNNNNNGG 2 cut(s) 184, 218
BsmAI GTCTC 5 cut(s) 50, 167, 168, 231, 250
BsmBI CGTCTC 2 cut(s) 167, 250
BsnI GGCC 1 cut(s) 143
Bso31I GGTCTC 1 cut(s) 168
Bsp143I GATC 2 cut(s) 27, 33
BspANI GGCC 1 cut(s) 143
BspPI GGATC 1 cut(s) 35
BspTNI GGTCTC 1 cut(s) 168
BssMI GATC 2 cut(s) 27, 33
Bst4CI ACNGT 1 cut(s) 161
Bst6I CTCTTC 1 cut(s) 43
BstKTI GATC 2 cut(s) 30, 36
BstMAI GTCTC 5 cut(s) 50, 167, 168, 231, 250
BstMBI GATC 2 cut(s) 27, 33
BstMWI GCNNNNNNNGC 1 cut(s) 130
BstV1I GCAGC 1 cut(s) 227
BstX2I RGATCY 1 cut(s) 27
BstYI RGATCY 1 cut(s) 27
BsuRI GGCC 1 cut(s) 143
BtgZI GCGATG 1 cut(s) 152
CseI GACGC 1 cut(s) 232
CviAII CATG 1 cut(s) 256
CviJI RGCY 4 cut(s) 109, 143, 198, 232
CviKI_1 RGCY 4 cut(s) 109, 143, 198, 232
DpnI GATC 2 cut(s) 29, 35
DpnII GATC 2 cut(s) 27, 33
Eam1104I CTCTTC 1 cut(s) 43
EarI CTCTTC 1 cut(s) 43
Eco31I GGTCTC 1 cut(s) 168
Esp3I CGTCTC 2 cut(s) 167, 250
FaeI CATG 1 cut(s) 259
FaiI YATR 2 cut(s) 112, 257
FatI CATG 1 cut(s) 255
Fnu4HI GCNGC 1 cut(s) 241
Fsp4HI GCNGC 1 cut(s) 241
GluI GCNGC 1 cut(s) 241
HaeIII GGCC 1 cut(s) 143
HapII CCGG 1 cut(s) 121
HgaI GACGC 1 cut(s) 232
Hin1II CATG 1 cut(s) 259
HinfI GANTC 1 cut(s) 43
HpaII CCGG 1 cut(s) 121
Hpy188I TCNGA 1 cut(s) 62
Hpy188III TCNNGA 1 cut(s) 31
HpyCH4III ACNGT 1 cut(s) 161
HpyF10VI GCNNNNNNNGC 1 cut(s) 130
Hsp92II CATG 1 cut(s) 259
Kzo9I GATC 2 cut(s) 27, 33
LpnPI CCDG 2 cut(s) 134, 225
Lsp1109I GCAGC 1 cut(s) 227
LweI GCATC 1 cut(s) 142
MalI GATC 2 cut(s) 29, 35
MboI GATC 2 cut(s) 27, 33
MboII GAAGA 5 cut(s) 30, 59, 67, 70, 203
MflI RGATCY 1 cut(s) 27
MlyI GAGTC 1 cut(s) 52
MnlI CCTC 5 cut(s) 61, 99, 178, 212, 264
MspI CCGG 1 cut(s) 121
MwoI GCNNNNNNNGC 1 cut(s) 130
NdeII GATC 2 cut(s) 27, 33
NlaIII CATG 1 cut(s) 259
NmeAIII GCCGAG 3 cut(s) 119, 197, 208
PcsI WCGNNNNNNNCGW 2 cut(s) 146, 240
PkrI GCNGC 1 cut(s) 242
PleI GAGTC 1 cut(s) 51
PpsI GAGTC 1 cut(s) 51
PsuI RGATCY 1 cut(s) 27
SatI GCNGC 1 cut(s) 241
Sau3AI GATC 2 cut(s) 27, 33
SchI GAGTC 1 cut(s) 52
SetI ASST 3 cut(s) 17, 189, 275
SfaNI GCATC 1 cut(s) 142
TaaI ACNGT 1 cut(s) 161
TaqI TCGA 3 cut(s) 41, 189, 234
TseI GCWGC 1 cut(s) 240
TspDTI ATGAA 1 cut(s) 255
TspGWI ACGGA 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.