Rh5AG524400

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
89911064 .. 89968707
57644 bp
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UTR
Exon/CDS
Intron
Rh5AG524400.1

Sequence Viewer

Length: 201 bp
ATGCTAACTGATACCTATTTCTCTTGGATCTTGATCTCTTCTGAGTCTCTCCTCCACTCTCCAGTTCTTCACTTCTTCTGCTCTCTCAAACCATTCACAAACGAGGCTATACCAAGTCTGGCGTCGTCGGCATCACTCAGCCTTGCCGTGTCGCTGCCGTCTCCATCGCCGGAAATTGAACAAAAGTCAAACCAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

66

Amino Acids

7.22

Weight (kDa)

5.41

Isoelectric Point (pI)

66.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018133)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 35
AcyI GRCGYC 1 cut(s) 122
AgsI TTSAA 1 cut(s) 179
Alw26I GTCTC 2 cut(s) 51, 165
AlwI GGATC 1 cut(s) 35
ApeKI GCWGC 1 cut(s) 154
BbvI GCAGC 1 cut(s) 141
BccI CCATC 1 cut(s) 172
BceAI ACGGC 2 cut(s) 131, 142
BcoDI GTCTC 2 cut(s) 51, 165
BisI GCNGC 1 cut(s) 155
BlsI GCNGC 1 cut(s) 156
BmsI GCATC 1 cut(s) 140
BpmI CTGGAG 1 cut(s) 45
BsaBI GATNNNNATC 1 cut(s) 32
BsaHI GRCGYC 1 cut(s) 122
Bse1I ACTGG 1 cut(s) 62
Bse8I GATNNNNATC 1 cut(s) 32
BseJI GATNNNNATC 1 cut(s) 32
BseMII CTCAG 2 cut(s) 33, 151
BseNI ACTGG 1 cut(s) 62
BseRI GAGGAG 1 cut(s) 41
BseXI GCAGC 1 cut(s) 141
BsiSI CCGG 1 cut(s) 170
BsmAI GTCTC 2 cut(s) 51, 165
BsmBI CGTCTC 1 cut(s) 165
Bsp143I GATC 2 cut(s) 27, 33
BspCNI CTCAG 2 cut(s) 34, 150
BspPI GGATC 1 cut(s) 35
BsrI ACTGG 1 cut(s) 62
BssMI GATC 2 cut(s) 27, 33
BssNI GRCGYC 1 cut(s) 122
Bst6I CTCTTC 1 cut(s) 43
BstACI GRCGYC 1 cut(s) 122
BstDEI CTNAG 2 cut(s) 42, 137
BstKTI GATC 2 cut(s) 30, 36
BstMAI GTCTC 2 cut(s) 51, 165
BstMBI GATC 2 cut(s) 27, 33
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstV1I GCAGC 1 cut(s) 141
BstX2I RGATCY 1 cut(s) 27
BstYI RGATCY 1 cut(s) 27
BtgZI GCGATG 1 cut(s) 150
CseI GACGC 1 cut(s) 111
CviJI RGCY 2 cut(s) 107, 141
CviKI_1 RGCY 2 cut(s) 107, 141
DdeI CTNAG 2 cut(s) 42, 137
DpnI GATC 2 cut(s) 29, 35
DpnII GATC 2 cut(s) 27, 33
Eam1104I CTCTTC 1 cut(s) 43
EarI CTCTTC 1 cut(s) 43
Esp3I CGTCTC 1 cut(s) 165
FaiI YATR 1 cut(s) 110
Fnu4HI GCNGC 1 cut(s) 155
Fsp4HI GCNGC 1 cut(s) 155
GluI GCNGC 1 cut(s) 155
GsuI CTGGAG 1 cut(s) 45
HapII CCGG 1 cut(s) 170
HgaI GACGC 1 cut(s) 111
Hin1I GRCGYC 1 cut(s) 122
HinfI GANTC 1 cut(s) 44
HpaII CCGG 1 cut(s) 170
Hpy188I TCNGA 1 cut(s) 43
Hpy188III TCNNGA 1 cut(s) 31
Hpy99I CGWCG 2 cut(s) 127, 130
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpyF3I CTNAG 2 cut(s) 42, 137
Hsp92I GRCGYC 1 cut(s) 122
Kzo9I GATC 2 cut(s) 27, 33
LpnPI CCDG 3 cut(s) 75, 104, 183
Lsp1109I GCAGC 1 cut(s) 141
LweI GCATC 1 cut(s) 140
MalI GATC 2 cut(s) 29, 35
MboI GATC 2 cut(s) 27, 33
MboII GAAGA 3 cut(s) 30, 59, 67
MflI RGATCY 1 cut(s) 27
MluCI AATT 1 cut(s) 174
MlyI GAGTC 1 cut(s) 53
MnlI CCTC 2 cut(s) 62, 97
MspI CCGG 1 cut(s) 170
MwoI GCNNNNNNNGC 1 cut(s) 128
NdeII GATC 2 cut(s) 27, 33
PkrI GCNGC 1 cut(s) 156
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
PsuI RGATCY 1 cut(s) 27
SatI GCNGC 1 cut(s) 155
Sau3AI GATC 2 cut(s) 27, 33
SchI GAGTC 1 cut(s) 53
SetI ASST 1 cut(s) 17
SfaNI GCATC 1 cut(s) 140
SgeI CNNG 9 cut(s) 36, 43, 74, 115, 126, 131, 155, 160, 182
Sse9I AATT 1 cut(s) 174
TasI AATT 1 cut(s) 174
TseI GCWGC 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.