Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0018133

Physical Location & Seq

Genomic Coordinates Reverse (-)

66735859 .. 66739575

Gene Structure 3717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG515400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGCCGTTTATTGGAACCCGCTATATGTATAGGCGTCAAGGAATGTGCCGCCGGCTTCTAAGTGCGATTGAATCTGCTCTCTGCTCTCTGAAAGTTGAAAGATTGGTCATACCTGCAATCTCAGAACTGACAGAAACGTGGACTTCTGTTTTTGGTTTTAAGTCCCTTGAAGAATCAAGCAAGCAGAAGATGAAGAACATGAATATCTTGGTTTTCCCTGGTGTAGATATCTTACAGAAACCATTGTTGAACCAGTTAACAGAAAAAAACGAGAGTCCTGTGAAAGGTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016567 GO:0016740 GO:0017015 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0023051 GO:0023057 GO:0030510 GO:0030514 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0046332 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0070410 GO:0070412 GO:0070647 GO:0071704 GO:0080090 GO:0090092 GO:0090101 GO:0090287 GO:0090288 GO:0140096 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:1903844 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook Jas PHD

Protein Analysis

97

Amino Acids

11.07

Weight (kDa)

9.51

Isoelectric Point (pI)

71.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IDM1_C	PF23209	1 - 81	2e-32	Increased DNA methylation 1, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018133)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g18790
rosa_chinensis	RchiOBHm_Chr2g0111451 RchiOBHm_Chr6g0271411
rosa_laevigata	RLG00000030178
rosa_multiflora	Rmu_co8021848.1_g000001 Rmu_sc0004705.1_g000022
rosa_roxburghii	Rroxscaffold_2G00122740
rosa_samantha	Rh5AG524400 Rh6DG515400
rosa_wichuraiana	Rw1G023050 Rw4G031460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	121
AciI	CCGC	2 cut(s)	19, 49
AcyI	GRCGYC	1 cut(s)	34
AfaI	GTAC	1 cut(s)	289
AfiI	CCNNNNNNNGG	2 cut(s)	11, 284
AgsI	TTSAA	4 cut(s)	71, 98, 170, 250
AjnI	CCWGG	1 cut(s)	217
BciT130I	CCWGG	1 cut(s)	219
BfuAI	ACCTGC	1 cut(s)	121
BisI	GCNGC	1 cut(s)	49
BlsI	GCNGC	1 cut(s)	50
Bme1390I	CCNGG	1 cut(s)	219
BmiI	GGNNCC	1 cut(s)	16
BmrFI	CCNGG	1 cut(s)	219
BsaHI	GRCGYC	1 cut(s)	34
BsaJI	CCNNGG	1 cut(s)	217
Bsc4I	CCNNNNNNNGG	2 cut(s)	11, 284
Bse118I	RCCGGY	1 cut(s)	51
Bse1I	ACTGG	1 cut(s)	253
BseBI	CCWGG	1 cut(s)	219
BseDI	CCNNGG	1 cut(s)	217
BseLI	CCNNNNNNNGG	2 cut(s)	11, 284
BseMII	CTCAG	1 cut(s)	135
BseNI	ACTGG	1 cut(s)	253
BsiSI	CCGG	1 cut(s)	52
BslFI	GGGAC	1 cut(s)	148
BslI	CCNNNNNNNGG	2 cut(s)	11, 284
BsmFI	GGGAC	1 cut(s)	148
BspACI	CCGC	2 cut(s)	19, 49
BspCNI	CTCAG	1 cut(s)	134
BspLI	GGNNCC	1 cut(s)	16
BspMI	ACCTGC	1 cut(s)	121
BsrFI	RCCGGY	1 cut(s)	51
BsrI	ACTGG	1 cut(s)	253
BssAI	RCCGGY	1 cut(s)	51
BssECI	CCNNGG	1 cut(s)	217
BssNI	GRCGYC	1 cut(s)	34
Bst2UI	CCWGG	1 cut(s)	219
BstACI	GRCGYC	1 cut(s)	34
BstC8I	GCNNGC	2 cut(s)	53, 182
BstDEI	CTNAG	3 cut(s)	59, 121, 291
BstENI	CCTNNNNNAGG	1 cut(s)	282
BstNI	CCWGG	1 cut(s)	219
BstSCI	CCNGG	1 cut(s)	217
BveI	ACCTGC	1 cut(s)	121
Cac8I	GCNNGC	2 cut(s)	53, 182
Cfr10I	RCCGGY	1 cut(s)	51
CseI	GACGC	1 cut(s)	23
Csp6I	GTAC	1 cut(s)	288
CviAII	CATG	1 cut(s)	199
CviJI	RGCY	1 cut(s)	55
CviKI_1	RGCY	1 cut(s)	55
CviQI	GTAC	1 cut(s)	288
DdeI	CTNAG	3 cut(s)	59, 121, 291
Eco32I	GATATC	1 cut(s)	229
EcoNI	CCTNNNNNAGG	1 cut(s)	282
EcoRII	CCWGG	1 cut(s)	217
EcoRV	GATATC	1 cut(s)	229
FaeI	CATG	1 cut(s)	202
FaiI	YATR	5 cut(s)	24, 26, 30, 110, 200
FaqI	GGGAC	1 cut(s)	148
FatI	CATG	1 cut(s)	198
FauI	CCCGC	1 cut(s)	26
Fnu4HI	GCNGC	1 cut(s)	49
Fsp4HI	GCNGC	1 cut(s)	49
GluI	GCNGC	1 cut(s)	49
HapII	CCGG	1 cut(s)	52
HgaI	GACGC	1 cut(s)	23
Hin1I	GRCGYC	1 cut(s)	34
Hin1II	CATG	1 cut(s)	202
HincII	GTYRAC	1 cut(s)	258
HindII	GTYRAC	1 cut(s)	258
HinfI	GANTC	3 cut(s)	71, 173, 274
HpaI	GTTAAC	1 cut(s)	258
HpaII	CCGG	1 cut(s)	52
Hpy166II	GTNNAC	2 cut(s)	141, 258
Hpy188I	TCNGA	2 cut(s)	90, 124
Hpy8I	GTNNAC	2 cut(s)	141, 258
HpyCH4IV	ACGT	1 cut(s)	137
HpyCH4V	TGCA	1 cut(s)	116
HpyF3I	CTNAG	3 cut(s)	59, 121, 291
HpySE526I	ACGT	1 cut(s)	137
Hsp92I	GRCGYC	1 cut(s)	34
Hsp92II	CATG	1 cut(s)	202
KroI	GCCGGC	1 cut(s)	51
KroNI	GCCGGC	1 cut(s)	53
KspAI	GTTAAC	1 cut(s)	258
LpnPI	CCDG	5 cut(s)	65, 126, 204, 231, 266
MaeII	ACGT	1 cut(s)	137
MboII	GAAGA	3 cut(s)	182, 199, 205
MlyI	GAGTC	1 cut(s)	283
MroNI	GCCGGC	1 cut(s)	51
MseI	TTAA	2 cut(s)	159, 257
MspI	CCGG	1 cut(s)	52
MspR9I	CCNGG	1 cut(s)	219
MvaI	CCWGG	1 cut(s)	219
NaeI	GCCGGC	1 cut(s)	53
NgoMIV	GCCGGC	1 cut(s)	51
NlaIII	CATG	1 cut(s)	202
NlaIV	GGNNCC	1 cut(s)	16
PdiI	GCCGGC	1 cut(s)	53
PfeI	GAWTC	2 cut(s)	71, 173
PkrI	GCNGC	1 cut(s)	50
PleI	GAGTC	1 cut(s)	282
PpsI	GAGTC	1 cut(s)	282
Psp6I	CCWGG	1 cut(s)	217
PspGI	CCWGG	1 cut(s)	217
PspN4I	GGNNCC	1 cut(s)	16
RsaI	GTAC	1 cut(s)	289
RsaNI	GTAC	1 cut(s)	288
SaqAI	TTAA	2 cut(s)	159, 257
SatI	GCNGC	1 cut(s)	49
SchI	GAGTC	1 cut(s)	283
ScrFI	CCNGG	1 cut(s)	219
SetI	ASST	3 cut(s)	115, 140, 289
SsiI	CCGC	2 cut(s)	19, 49
StyD4I	CCNGG	1 cut(s)	217
TaiI	ACGT	1 cut(s)	140
TauI	GCSGC	1 cut(s)	51
TfiI	GAWTC	2 cut(s)	71, 173
Tru1I	TTAA	2 cut(s)	159, 257
Tru9I	TTAA	2 cut(s)	159, 257
TspDTI	ATGAA	2 cut(s)	206, 215
XagI	CCTNNNNNAGG	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.