Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0018133

Physical Location & Seq

Genomic Coordinates Reverse (-)

58608377 .. 58611993

Gene Structure 3617 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G031460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGTCGGCCAAGGAGGAGGACGGCGAGGAATTTGATGAGGAATTGCAGGAGTCTGATGATGATCAGGTGGCGGAAAATGAAGAAGATGAAGATGAGGAGGAGAAGGAGGAAGAAGAAGAAAATGTAGAAGAAGAAGAAGGTGGAGGCAAGAACGAAATCGAGGATGGTTTCTTTAATAGAAAGGCTACGGAAGCAGAGGAATATGGGAATGACAAGGAGGATGAAGAAGAAGATGGTGAAGATGAGGAGGAAGAGGATGATGCCCAGGAGCTCATGAATGTAGGGGAAGGTGAGGACGACGGGGATGGCATGGATGCAAGAATCCATGGAATCTATCTAGCAGAGATGCCGTTTATTGGAACCCGCTATATGTATAGGCGTCAAGGAATGTGCCGCCGGCTTCTAAGTGCTATTGAATCTATAATGTTCATCTCAAATCTATTGCATCTTGCTTGTCTTTACATGTGCTTTAACCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016567 GO:0016740 GO:0017015 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0023051 GO:0023057 GO:0030510 GO:0030514 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0046332 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0070410 GO:0070412 GO:0070647 GO:0071704 GO:0080090 GO:0090092 GO:0090101 GO:0090287 GO:0090288 GO:0140096 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:1903844 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook Jas PHD

Protein Analysis

159

Amino Acids

18.4

Weight (kDa)

4.05

Isoelectric Point (pI)

95.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IDM1_C	PF23209	107 - 143	1.2e-12	Increased DNA methylation 1, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018133)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g18790
rosa_chinensis	RchiOBHm_Chr2g0111451 RchiOBHm_Chr6g0271411
rosa_laevigata	RLG00000030178
rosa_multiflora	Rmu_co8021848.1_g000001 Rmu_sc0004705.1_g000022
rosa_roxburghii	Rroxscaffold_2G00122740
rosa_samantha	Rh5AG524400 Rh6DG515400
rosa_wichuraiana	Rw1G023050 Rw4G031460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	71, 364, 394
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	1 cut(s)	29
AcyI	GRCGYC	1 cut(s)	379
AfiI	CCNNNNNNNGG	1 cut(s)	356
AflIII	ACRYGT	1 cut(s)	462
AgsI	TTSAA	1 cut(s)	416
AjnI	CCWGG	1 cut(s)	264
AluBI	AGCT	1 cut(s)	271
AluI	AGCT	1 cut(s)	271
Alw21I	GWGCWC	1 cut(s)	273
AoxI	GGCC	1 cut(s)	6
ApoI	RAATTY	1 cut(s)	29
AsuHPI	GGTGA	2 cut(s)	248, 302
BanII	GRGCYC	1 cut(s)	273
Bbv12I	GWGCWC	1 cut(s)	273
BccI	CCATC	3 cut(s)	158, 227, 299
BceAI	ACGGC	2 cut(s)	37, 334
BciT130I	CCWGG	1 cut(s)	266
BclI	TGATCA	1 cut(s)	61
BfaI	CTAG	1 cut(s)	338
BisI	GCNGC	1 cut(s)	394
BlsI	GCNGC	1 cut(s)	395
Bme1390I	CCNGG	1 cut(s)	266
BmiI	GGNNCC	1 cut(s)	361
BmrFI	CCNGG	1 cut(s)	266
BmsI	GCATC	4 cut(s)	250, 304, 336, 454
BsaBI	GATNNNNATC	1 cut(s)	60
BsaHI	GRCGYC	1 cut(s)	379
BsaJI	CCNNGG	3 cut(s)	9, 264, 325
Bsc4I	CCNNNNNNNGG	1 cut(s)	356
Bse118I	RCCGGY	1 cut(s)	396
Bse8I	GATNNNNATC	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	266
BseDI	CCNNGG	3 cut(s)	9, 264, 325
BseGI	GGATG	5 cut(s)	169, 226, 262, 310, 319
BseJI	GATNNNNATC	1 cut(s)	60
BseLI	CCNNNNNNNGG	1 cut(s)	356
BseRI	GAGGAG	4 cut(s)	29, 110, 113, 260
BshFI	GGCC	1 cut(s)	8
BsiHKAI	GWGCWC	1 cut(s)	273
BsiSI	CCGG	1 cut(s)	397
BslI	CCNNNNNNNGG	1 cut(s)	356
BsnI	GGCC	1 cut(s)	8
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp143I	GATC	1 cut(s)	61
Bsp19I	CCATGG	1 cut(s)	325
BspACI	CCGC	3 cut(s)	71, 364, 394
BspANI	GGCC	1 cut(s)	8
BspHI	TCATGA	1 cut(s)	273
BspLI	GGNNCC	1 cut(s)	361
BsrFI	RCCGGY	1 cut(s)	396
BssAI	RCCGGY	1 cut(s)	396
BssECI	CCNNGG	3 cut(s)	9, 264, 325
BssMI	GATC	1 cut(s)	61
BssNI	GRCGYC	1 cut(s)	379
BssT1I	CCWWGG	2 cut(s)	9, 325
Bst2UI	CCWGG	1 cut(s)	266
Bst6I	CTCTTC	1 cut(s)	246
BstACI	GRCGYC	1 cut(s)	379
BstC8I	GCNNGC	1 cut(s)	398
BstDEI	CTNAG	1 cut(s)	404
BstDSI	CCRYGG	1 cut(s)	325
BstF5I	GGATG	5 cut(s)	169, 226, 262, 310, 319
BstKTI	GATC	1 cut(s)	64
BstMBI	GATC	1 cut(s)	61
BstMWI	GCNNNNNNNGC	1 cut(s)	191
BstNI	CCWGG	1 cut(s)	266
BstNSI	RCATGY	1 cut(s)	466
BstSCI	CCNGG	1 cut(s)	264
BsuRI	GGCC	1 cut(s)	8
BtgI	CCRYGG	1 cut(s)	325
BtsCI	GGATG	5 cut(s)	169, 226, 262, 310, 319
Cac8I	GCNNGC	1 cut(s)	398
CciI	TCATGA	1 cut(s)	273
Cfr10I	RCCGGY	1 cut(s)	396
CseI	GACGC	1 cut(s)	368
CviAII	CATG	4 cut(s)	274, 310, 326, 463
CviJI	RGCY	4 cut(s)	8, 185, 271, 400
CviKI_1	RGCY	4 cut(s)	8, 185, 271, 400
DdeI	CTNAG	1 cut(s)	404
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
EaeI	YGGCCR	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
EciI	GGCGGA	1 cut(s)	86
Ecl136II	GAGCTC	1 cut(s)	271
Eco130I	CCWWGG	2 cut(s)	9, 325
Eco24I	GRGCYC	1 cut(s)	273
Eco53kI	GAGCTC	1 cut(s)	271
EcoICRI	GAGCTC	1 cut(s)	271
EcoRII	CCWGG	1 cut(s)	264
EcoT14I	CCWWGG	2 cut(s)	9, 325
EcoT38I	GRGCYC	1 cut(s)	273
ErhI	CCWWGG	2 cut(s)	9, 325
FaeI	CATG	4 cut(s)	277, 313, 329, 466
FatI	CATG	4 cut(s)	273, 309, 325, 462
FauI	CCCGC	1 cut(s)	371
FbaI	TGATCA	1 cut(s)	61
Fnu4HI	GCNGC	1 cut(s)	394
FokI	GGATG	5 cut(s)	176, 233, 269, 317, 326
FriOI	GRGCYC	1 cut(s)	273
Fsp4HI	GCNGC	1 cut(s)	394
FspBI	CTAG	1 cut(s)	338
GluI	GCNGC	1 cut(s)	394
HaeIII	GGCC	1 cut(s)	8
HapII	CCGG	1 cut(s)	397
HgaI	GACGC	1 cut(s)	368
Hin1I	GRCGYC	1 cut(s)	379
Hin1II	CATG	4 cut(s)	277, 313, 329, 466
HinfI	GANTC	4 cut(s)	50, 321, 330, 416
HpaII	CCGG	1 cut(s)	397
HphI	GGTGA	2 cut(s)	248, 302
Hpy188I	TCNGA	1 cut(s)	55
Hpy188III	TCNNGA	1 cut(s)	274
Hpy99I	CGWCG	1 cut(s)	302
HpyAV	CCTTC	3 cut(s)	97, 131, 281
HpyCH4V	TGCA	3 cut(s)	46, 317, 445
HpyF10VI	GCNNNNNNNGC	1 cut(s)	191
HpyF3I	CTNAG	1 cut(s)	404
Hsp92I	GRCGYC	1 cut(s)	379
Hsp92II	CATG	4 cut(s)	277, 313, 329, 466
KroI	GCCGGC	1 cut(s)	396
KroNI	GCCGGC	1 cut(s)	398
Ksp22I	TGATCA	1 cut(s)	61
Kzo9I	GATC	1 cut(s)	61
LmnI	GCTCC	1 cut(s)	268
LpnPI	CCDG	5 cut(s)	32, 50, 251, 278, 410
LweI	GCATC	4 cut(s)	250, 304, 336, 454
MaeI	CTAG	1 cut(s)	338
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MhlI	GDGCHC	1 cut(s)	273
MluCI	AATT	2 cut(s)	29, 41
MlyI	GAGTC	1 cut(s)	59
MroNI	GCCGGC	1 cut(s)	396
MseI	TTAA	2 cut(s)	174, 471
MspI	CCGG	1 cut(s)	397
MspR9I	CCNGG	1 cut(s)	266
MvaI	CCWGG	1 cut(s)	266
MwoI	GCNNNNNNNGC	1 cut(s)	191
NaeI	GCCGGC	1 cut(s)	398
NcoI	CCATGG	1 cut(s)	325
NdeII	GATC	1 cut(s)	61
NgoMIV	GCCGGC	1 cut(s)	396
NlaIII	CATG	4 cut(s)	277, 313, 329, 466
NlaIV	GGNNCC	1 cut(s)	361
NspI	RCATGY	1 cut(s)	466
PagI	TCATGA	1 cut(s)	273
PciI	ACATGT	1 cut(s)	462
PdiI	GCCGGC	1 cut(s)	398
PfeI	GAWTC	3 cut(s)	321, 330, 416
PkrI	GCNGC	1 cut(s)	395
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
PscI	ACATGT	1 cut(s)	462
Psp124BI	GAGCTC	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	264
PspGI	CCWGG	1 cut(s)	264
PspN4I	GGNNCC	1 cut(s)	361
SacI	GAGCTC	1 cut(s)	273
SaqAI	TTAA	2 cut(s)	174, 471
SatI	GCNGC	1 cut(s)	394
Sau3AI	GATC	1 cut(s)	61
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	1 cut(s)	266
SduI	GDGCHC	1 cut(s)	273
SetI	ASST	5 cut(s)	69, 142, 273, 292, 477
SfaNI	GCATC	4 cut(s)	250, 304, 336, 454
Sse9I	AATT	2 cut(s)	29, 41
SsiI	CCGC	3 cut(s)	71, 364, 394
SspMI	CTAG	1 cut(s)	338
SstI	GAGCTC	1 cut(s)	273
StyD4I	CCNGG	1 cut(s)	264
StyI	CCWWGG	2 cut(s)	9, 325
TaqI	TCGA	1 cut(s)	159
TasI	AATT	2 cut(s)	29, 41
TauI	GCSGC	1 cut(s)	396
TfiI	GAWTC	3 cut(s)	321, 330, 416
Tru1I	TTAA	2 cut(s)	174, 471
Tru9I	TTAA	2 cut(s)	174, 471
TspDTI	ATGAA	5 cut(s)	93, 102, 237, 290, 418
TspGWI	ACGGA	1 cut(s)	203
XapI	RAATTY	1 cut(s)	29
XceI	RCATGY	1 cut(s)	466
XspI	CTAG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.