Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018133

Physical Location & Seq

Genomic Coordinates Forward (+)

31039529 .. 31042731

Gene Structure 3203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24346

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGAATGTAGGGGAAGGTGAGGACGACGGGGATGGCATGGATGCAAGAATCCATGGAAACTATCTAGCAGAGATGCCGTTTATTGGAACCCGCTATATGTATAGGCGTCAAGGAATGTGCTGCCGGCTTCTAAGTGCGATTGAATCTGTAATGTTCATCTCAAATATAGCATCTTGCTTGTCTTTACATGTGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016567 GO:0016740 GO:0017015 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0023051 GO:0023057 GO:0030510 GO:0030514 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0046332 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0070410 GO:0070412 GO:0070647 GO:0071704 GO:0080090 GO:0090092 GO:0090101 GO:0090287 GO:0090288 GO:0140096 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:1903844 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook Jas PHD

Protein Analysis

65

Amino Acids

7.26

Weight (kDa)

5.04

Isoelectric Point (pI)

59.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IDM1_C	PF23209	16 - 53	4.1e-13	Increased DNA methylation 1, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0018133)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g18790
rosa_chinensis	RchiOBHm_Chr2g0111451 RchiOBHm_Chr6g0271411
rosa_laevigata	RLG00000030178
rosa_multiflora	Rmu_co8021848.1_g000001 Rmu_sc0004705.1_g000022
rosa_roxburghii	Rroxscaffold_2G00122740
rosa_samantha	Rh5AG524400 Rh6DG515400
rosa_wichuraiana	Rw1G023050 Rw4G031460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	91
AcyI	GRCGYC	1 cut(s)	106
AfiI	CCNNNNNNNGG	1 cut(s)	83
AflIII	ACRYGT	1 cut(s)	187
AgsI	TTSAA	1 cut(s)	143
ApeKI	GCWGC	1 cut(s)	120
AsuHPI	GGTGA	1 cut(s)	29
BbvI	GCAGC	1 cut(s)	107
BccI	CCATC	1 cut(s)	26
BceAI	ACGGC	1 cut(s)	61
BfaI	CTAG	1 cut(s)	65
BisI	GCNGC	1 cut(s)	121
BlsI	GCNGC	1 cut(s)	122
BmiI	GGNNCC	1 cut(s)	88
BmsI	GCATC	3 cut(s)	31, 63, 179
BsaHI	GRCGYC	1 cut(s)	106
BsaJI	CCNNGG	1 cut(s)	52
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse118I	RCCGGY	1 cut(s)	123
BseDI	CCNNGG	1 cut(s)	52
BseGI	GGATG	2 cut(s)	37, 46
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseXI	GCAGC	1 cut(s)	107
BsiSI	CCGG	1 cut(s)	124
BslI	CCNNNNNNNGG	1 cut(s)	83
Bsp19I	CCATGG	1 cut(s)	52
BspACI	CCGC	1 cut(s)	91
BspLI	GGNNCC	1 cut(s)	88
BsrFI	RCCGGY	1 cut(s)	123
BssAI	RCCGGY	1 cut(s)	123
BssECI	CCNNGG	1 cut(s)	52
BssNI	GRCGYC	1 cut(s)	106
BssT1I	CCWWGG	1 cut(s)	52
BstACI	GRCGYC	1 cut(s)	106
BstC8I	GCNNGC	1 cut(s)	125
BstDEI	CTNAG	1 cut(s)	131
BstDSI	CCRYGG	1 cut(s)	52
BstF5I	GGATG	2 cut(s)	37, 46
BstNSI	RCATGY	1 cut(s)	191
BstV1I	GCAGC	1 cut(s)	107
BtgI	CCRYGG	1 cut(s)	52
BtsCI	GGATG	2 cut(s)	37, 46
Cac8I	GCNNGC	1 cut(s)	125
Cfr10I	RCCGGY	1 cut(s)	123
CseI	GACGC	1 cut(s)	95
CviAII	CATG	3 cut(s)	37, 53, 188
CviJI	RGCY	1 cut(s)	127
CviKI_1	RGCY	1 cut(s)	127
DdeI	CTNAG	1 cut(s)	131
Eco130I	CCWWGG	1 cut(s)	52
EcoT14I	CCWWGG	1 cut(s)	52
ErhI	CCWWGG	1 cut(s)	52
FaeI	CATG	3 cut(s)	40, 56, 191
FaiI	YATR	7 cut(s)	38, 54, 96, 98, 102, 167, 189
FatI	CATG	3 cut(s)	36, 52, 187
FauI	CCCGC	1 cut(s)	98
Fnu4HI	GCNGC	1 cut(s)	121
FokI	GGATG	2 cut(s)	44, 53
Fsp4HI	GCNGC	1 cut(s)	121
FspBI	CTAG	1 cut(s)	65
GluI	GCNGC	1 cut(s)	121
HapII	CCGG	1 cut(s)	124
HgaI	GACGC	1 cut(s)	95
Hin1I	GRCGYC	1 cut(s)	106
Hin1II	CATG	3 cut(s)	40, 56, 191
HinfI	GANTC	2 cut(s)	48, 143
HpaII	CCGG	1 cut(s)	124
HphI	GGTGA	1 cut(s)	29
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	1 cut(s)	8
HpyCH4V	TGCA	1 cut(s)	44
HpyF3I	CTNAG	1 cut(s)	131
Hsp92I	GRCGYC	1 cut(s)	106
Hsp92II	CATG	3 cut(s)	40, 56, 191
KroI	GCCGGC	1 cut(s)	123
KroNI	GCCGGC	1 cut(s)	125
LpnPI	CCDG	1 cut(s)	137
Lsp1109I	GCAGC	1 cut(s)	107
LweI	GCATC	3 cut(s)	31, 63, 179
MaeI	CTAG	1 cut(s)	65
MnlI	CCTC	1 cut(s)	13
MroNI	GCCGGC	1 cut(s)	123
MseI	TTAA	1 cut(s)	196
MspI	CCGG	1 cut(s)	124
NaeI	GCCGGC	1 cut(s)	125
NcoI	CCATGG	1 cut(s)	52
NgoMIV	GCCGGC	1 cut(s)	123
NlaIII	CATG	3 cut(s)	40, 56, 191
NlaIV	GGNNCC	1 cut(s)	88
NspI	RCATGY	1 cut(s)	191
PciI	ACATGT	1 cut(s)	187
PdiI	GCCGGC	1 cut(s)	125
PfeI	GAWTC	2 cut(s)	48, 143
PkrI	GCNGC	1 cut(s)	122
PscI	ACATGT	1 cut(s)	187
PspN4I	GGNNCC	1 cut(s)	88
SaqAI	TTAA	1 cut(s)	196
SatI	GCNGC	1 cut(s)	121
SetI	ASST	1 cut(s)	19
SfaNI	GCATC	3 cut(s)	31, 63, 179
SsiI	CCGC	1 cut(s)	91
SspMI	CTAG	1 cut(s)	65
StyI	CCWWGG	1 cut(s)	52
TfiI	GAWTC	2 cut(s)	48, 143
Tru1I	TTAA	1 cut(s)	196
Tru9I	TTAA	1 cut(s)	196
TseI	GCWGC	1 cut(s)	120
TspDTI	ATGAA	2 cut(s)	17, 145
XceI	RCATGY	1 cut(s)	191
XspI	CTAG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.