Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0015860

Physical Location & Seq

Genomic Coordinates Reverse (-)

19702064 .. 19705667

Gene Structure 3604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCGAACAGTAATCTTCCCCGACGAATCATCAAGGAAACTCAACGTCTCCTCAGTGAACCTGCACCGGGGATTAGTGCTTCACCGTCAGAAGAGAATATGCGATACTTCAATGTGATGATCCTTGGCCCAACACAATCTCCTTATGAAGGAGTTTTCAAGTTGGAACTCTTTTTGCCTGAAGAATACCCAATGGCTGCTCCAAAGGTTCGATTTCTCACCAAAATTTATCATCCTAACATTGACAAGCTGGGAAGGATATGTCTTGATATATTGAAAGACAAGTGGAGTCCTGCTCTCCAGATCCGAACTGTACTTTTGAGTATTCAGGCACTGTTGAGTGCCCCAAACCCCGACGACCCGCTCTCAGAGAACATTGCAAAGCATTGGAAATCAAATGAGGCTGAAGCTGTTGAAACAGCCAAGGAATGGACCCGTTTATATGCAAGCGGTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061630 GO:0061659 GO:0070534 GO:0070647 GO:0071704 GO:0090304 GO:0140096 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 ko04624 map04120 map04624

Pfam Domains

Protein Families

UQ_con

Protein Analysis

153

Amino Acids

17.19

Weight (kDa)

6.74

Isoelectric Point (pI)

49.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	9 - 144	4.5e-48	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015860)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78870
fragaria_vesca	FvH4_3g18500
malus_domestica	MD03G1241600.v1.1 MD11G1260900.v1.1
prunus_persica	Prupe.4G167300_v2.0.a1 Prupe.4G167300_v2.0.a1 Prupe.4G167300_v2.0.a1
pyrus_communis	pycom03g18840 pycom11g23030
rosa_chinensis	RchiOBHm_Chr5g0031261
rosa_laevigata	RLG00000033295
rosa_roxburghii	Rroxscaffold_1G00049030
rosa_rugosa	Rorug05G0123300
rosa_samantha	Rh5CG240000
rosa_wichuraiana	Rw5G019830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	70
AccB7I	CCANNNNNTGG	1 cut(s)	429
AccBSI	CCGCTC	1 cut(s)	364
AciI	CCGC	2 cut(s)	362, 450
AclWI	GGATC	2 cut(s)	115, 298
AcsI	RAATTY	1 cut(s)	225
AcuI	CTGAAG	2 cut(s)	201, 426
AfaI	GTAC	1 cut(s)	315
AfiI	CCNNNNNNNGG	3 cut(s)	68, 149, 429
AgsI	TTSAA	4 cut(s)	112, 160, 277, 416
AluBI	AGCT	2 cut(s)	250, 410
AluI	AGCT	2 cut(s)	250, 410
Alw26I	GTCTC	1 cut(s)	53
AlwI	GGATC	2 cut(s)	115, 298
AlwNI	CAGNNNCTG	1 cut(s)	334
AoxI	GGCC	1 cut(s)	127
ApeKI	GCWGC	1 cut(s)	197
ApoI	RAATTY	1 cut(s)	225
AspS9I	GGNCC	2 cut(s)	128, 432
AsuC2I	CCSGG	1 cut(s)	69
AsuHPI	GGTGA	2 cut(s)	75, 211
AvaII	GGWCC	1 cut(s)	432
BaeGI	GKGCMC	1 cut(s)	346
BbvI	GCAGC	1 cut(s)	184
BcnI	CCSGG	1 cut(s)	69
BcoDI	GTCTC	1 cut(s)	53
BfuAI	ACCTGC	1 cut(s)	70
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
Bme1390I	CCNGG	1 cut(s)	69
Bme18I	GGWCC	1 cut(s)	432
BmgT120I	GGNCC	2 cut(s)	128, 432
BmiI	GGNNCC	1 cut(s)	434
BmrFI	CCNGG	1 cut(s)	69
BplI	GAGNNNNNCTC	2 cut(s)	280, 312
BpmI	CTGGAG	1 cut(s)	284
BpuMI	CCSGG	1 cut(s)	69
BsaJI	CCNNGG	3 cut(s)	68, 124, 423
BsaXI	ACNNNNNCTCC	2 cut(s)	124, 154
Bsc4I	CCNNNNNNNGG	3 cut(s)	68, 149, 429
Bse3DI	GCAATG	1 cut(s)	375
BseDI	CCNNGG	3 cut(s)	68, 124, 423
BseGI	GGATG	1 cut(s)	232
BseLI	CCNNNNNNNGG	3 cut(s)	68, 149, 429
BseMI	GCAATG	1 cut(s)	375
BseMII	CTCAG	2 cut(s)	67, 381
BseRI	GAGGAG	1 cut(s)	41
BseSI	GKGCMC	1 cut(s)	346
BseXI	GCAGC	1 cut(s)	184
BseYI	CCCAGC	1 cut(s)	250
BsgI	GTGCAG	1 cut(s)	48
BshFI	GGCC	1 cut(s)	129
BsiSI	CCGG	1 cut(s)	68
BslI	CCNNNNNNNGG	3 cut(s)	68, 149, 429
BsmAI	GTCTC	1 cut(s)	53
BsmBI	CGTCTC	1 cut(s)	53
BsnI	GGCC	1 cut(s)	129
Bsp1286I	GDGCHC	1 cut(s)	346
Bsp143I	GATC	2 cut(s)	120, 303
BspACI	CCGC	2 cut(s)	362, 450
BspANI	GGCC	1 cut(s)	129
BspCNI	CTCAG	2 cut(s)	66, 380
BspLI	GGNNCC	1 cut(s)	434
BspMI	ACCTGC	1 cut(s)	70
BspPI	GGATC	2 cut(s)	115, 298
BsrBI	CCGCTC	1 cut(s)	364
BsrDI	GCAATG	1 cut(s)	375
BssECI	CCNNGG	3 cut(s)	68, 124, 423
BssMI	GATC	2 cut(s)	120, 303
BssT1I	CCWWGG	2 cut(s)	124, 423
Bst4CI	ACNGT	4 cut(s)	11, 87, 313, 336
Bst6I	CTCTTC	1 cut(s)	87
BstC8I	GCNNGC	1 cut(s)	448
BstDEI	CTNAG	2 cut(s)	53, 367
BstENI	CCTNNNNNAGG	1 cut(s)	147
BstF5I	GGATG	1 cut(s)	232
BstKTI	GATC	2 cut(s)	123, 306
BstMAI	GTCTC	1 cut(s)	53
BstMBI	GATC	2 cut(s)	120, 303
BstSCI	CCNGG	1 cut(s)	67
BstSLI	GKGCMC	1 cut(s)	346
BstV1I	GCAGC	1 cut(s)	184
BstX2I	RGATCY	1 cut(s)	303
BstYI	RGATCY	1 cut(s)	303
BsuRI	GGCC	1 cut(s)	129
BtsCI	GGATG	1 cut(s)	232
BtsIMutI	CAGTG	2 cut(s)	61, 332
BveI	ACCTGC	1 cut(s)	70
Cac8I	GCNNGC	1 cut(s)	448
CaiI	CAGNNNCTG	1 cut(s)	334
Cfr13I	GGNCC	2 cut(s)	128, 432
Csp6I	GTAC	1 cut(s)	314
CviJI	RGCY	6 cut(s)	129, 197, 250, 404, 410, 422
CviKI_1	RGCY	6 cut(s)	129, 197, 250, 404, 410, 422
CviQI	GTAC	1 cut(s)	314
DdeI	CTNAG	2 cut(s)	53, 367
DpnI	GATC	2 cut(s)	122, 305
DpnII	GATC	2 cut(s)	120, 303
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
Eco130I	CCWWGG	2 cut(s)	124, 423
Eco47I	GGWCC	1 cut(s)	432
Eco57I	CTGAAG	2 cut(s)	201, 426
EcoNI	CCTNNNNNAGG	1 cut(s)	147
EcoT14I	CCWWGG	2 cut(s)	124, 423
ErhI	CCWWGG	2 cut(s)	124, 423
Esp3I	CGTCTC	1 cut(s)	53
FaiI	YATR	6 cut(s)	101, 147, 262, 272, 442, 444
FauI	CCCGC	1 cut(s)	369
Fnu4HI	GCNGC	1 cut(s)	198
FokI	GGATG	1 cut(s)	219
Fsp4HI	GCNGC	1 cut(s)	198
GluI	GCNGC	1 cut(s)	198
GsaI	CCCAGC	1 cut(s)	254
GsuI	CTGGAG	1 cut(s)	284
HaeIII	GGCC	1 cut(s)	129
HapII	CCGG	1 cut(s)	68
HinfI	GANTC	2 cut(s)	27, 289
HpaII	CCGG	1 cut(s)	68
HphI	GGTGA	2 cut(s)	75, 211
Hpy166II	GTNNAC	1 cut(s)	59
Hpy188I	TCNGA	3 cut(s)	91, 308, 370
Hpy188III	TCNNGA	2 cut(s)	266, 301
Hpy8I	GTNNAC	1 cut(s)	59
Hpy99I	CGWCG	2 cut(s)	27, 359
HpyAV	CCTTC	2 cut(s)	143, 249
HpyCH4III	ACNGT	4 cut(s)	11, 87, 313, 336
HpyCH4IV	ACGT	1 cut(s)	46
HpyCH4V	TGCA	3 cut(s)	65, 380, 446
HpyF3I	CTNAG	2 cut(s)	53, 367
HpySE526I	ACGT	1 cut(s)	46
Kzo9I	GATC	2 cut(s)	120, 303
LmnI	GCTCC	1 cut(s)	205
LpnPI	CCDG	7 cut(s)	75, 81, 192, 236, 306, 314, 314
Lsp1109I	GCAGC	1 cut(s)	184
MaeII	ACGT	1 cut(s)	46
MalI	GATC	2 cut(s)	122, 305
MbiI	CCGCTC	1 cut(s)	364
MboI	GATC	2 cut(s)	120, 303
MboII	GAAGA	3 cut(s)	8, 104, 194
MflI	RGATCY	1 cut(s)	303
MhlI	GDGCHC	1 cut(s)	346
MluCI	AATT	1 cut(s)	225
MlyI	GAGTC	1 cut(s)	298
MmeI	TCCRAC	1 cut(s)	144
MnlI	CCTC	2 cut(s)	62, 394
MspI	CCGG	1 cut(s)	68
MspR9I	CCNGG	1 cut(s)	69
NciI	CCSGG	1 cut(s)	69
NdeII	GATC	2 cut(s)	120, 303
NlaIV	GGNNCC	1 cut(s)	434
PfeI	GAWTC	1 cut(s)	27
PflMI	CCANNNNNTGG	1 cut(s)	429
PkrI	GCNGC	1 cut(s)	199
PleI	GAGTC	1 cut(s)	297
PpsI	GAGTC	1 cut(s)	297
PspFI	CCCAGC	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	434
PspPI	GGNCC	2 cut(s)	128, 432
PstNI	CAGNNNCTG	1 cut(s)	334
PsuI	RGATCY	1 cut(s)	303
RsaI	GTAC	1 cut(s)	315
RsaNI	GTAC	1 cut(s)	314
SatI	GCNGC	1 cut(s)	198
Sau3AI	GATC	2 cut(s)	120, 303
Sau96I	GGNCC	2 cut(s)	128, 432
SchI	GAGTC	1 cut(s)	298
ScrFI	CCNGG	1 cut(s)	69
SduI	GDGCHC	1 cut(s)	346
SetI	ASST	5 cut(s)	49, 64, 210, 252, 412
SinI	GGWCC	1 cut(s)	432
Sse9I	AATT	1 cut(s)	225
SsiI	CCGC	2 cut(s)	362, 450
StyD4I	CCNGG	1 cut(s)	67
StyI	CCWWGG	2 cut(s)	124, 423
TaaI	ACNGT	4 cut(s)	11, 87, 313, 336
TaiI	ACGT	1 cut(s)	49
TaqI	TCGA	1 cut(s)	211
TasI	AATT	1 cut(s)	225
TatI	WGTACW	1 cut(s)	313
TfiI	GAWTC	1 cut(s)	27
TscAI	CASTG	2 cut(s)	61, 339
TseI	GCWGC	1 cut(s)	197
TspDTI	ATGAA	1 cut(s)	162
TspRI	CASTG	2 cut(s)	61, 339
Van91I	CCANNNNNTGG	1 cut(s)	429
VpaK11BI	GGWCC	1 cut(s)	432
XagI	CCTNNNNNAGG	1 cut(s)	147
XapI	RAATTY	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.