Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0014110

Physical Location & Seq

Genomic Coordinates Forward (+)

20553154 .. 20560595

Gene Structure 7442 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGAGGTGCTGTCACCCATAAAGGATGGAGTTGTTGTTGACTGGGATGCTGTGGAGGGTATATGGGACCATGCTTTTAGGGAATGCCTATTGGTTGATCCTAAAGAGCATCCAATGCTACTTGCAGAGCCATCTTTGAACACTCAACAACAAAGAGAAAGGACAACAGAACTTATGTTTGAAAAGTACAAAGTTCCTGCCTTATTTTTGGCCAAGAATGCTGTTCTCACATCATTTGCATCAGGCCGTGCTACCTCATTAGTAGTTGATGGTGGTGGAGGATCGACTACAGTTGCTCCAGTTCATGATGGCTATGTTCTTCAAAAGGCTGTGTTATCTTCTCCTATTGGAGGAGAATTTCTTACTGATTGTTTGACAAAAAGTTTGGAAAGTAAAGGAATGACGATTAAACCCAGATATTCTTTCAAGAGAAAAGAAACGCGACCTGGAGAGTTTCAGGTAGTCGATGTTGATTTTCCAAATACCACGGAAAGCTACAGACTCTATTCCCAGAGGATAATTGCTAGTGACATTAAAGAATGTGTGTGTAGAGCCCCGGACACTCCATATGATGAAATCGCGTATTCAAACATTCCAATGACCTCATATGAGCTCCCTGATGGCCAGACAATTGAAATCGGTGCTGATAGATTCAAGATTCCTGACATTCTATTTAACCCATCATTGGCTCAGACAATTCCTGGTATGGAGCATTTTGCAGATATTGCTCCCGCTGTTCGTGGTCTTCCACAAATGGTTATCGAGAGCATTAACAAGTGTGACGTGGACATCCGTCGTGAATTATTTAGTAGCATACTGCTTGCCGGTGGCACAGCATCAATGCAACAGCTAAAGGAACGCCTTGAGAAAGATATGCTGGAGGAGTCTCCTCAAGCTGCTAGAGTCAAAGTATTGGTGGCCGGCAATTCAACAGAAAGGCGATTCAGTGTTTGGATAGGCGGAAGTATATTGGCATCTCTTGGTTCATTCCAGCAAATGTGGTTCTCCAAGGCTGAGTACGAGGAGCATGGGGCTTCTTACATACAACGAAAGTGCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006325 GO:0006996 GO:0007010 GO:0007275 GO:0007276 GO:0008150 GO:0009314 GO:0009416 GO:0009555 GO:0009628 GO:0009648 GO:0009791 GO:0009987 GO:0010228 GO:0016043 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048571 GO:0048573 GO:0048574 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051276 GO:0051704 GO:0055046 GO:0061458 GO:0070013 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Actin

Protein Analysis

354

Amino Acids

39.27

Weight (kDa)

5.19

Isoelectric Point (pI)

36.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Actin	PF00022	1 - 352	2.7e-137	Actin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18450
fragaria_vesca	FvH4_3g17390 FvH4_6g50670
malus_domestica	MD03G1252000.v1.1 MD11G1273400.v1.1
prunus_persica	Prupe.4G154200_v2.0.a1
pyrus_communis	pycom03g19950
rosa_chinensis	RchiOBHm_Chr5g0028921
rosa_laevigata	RLG00000033127
rosa_multiflora	Rmu_sc0005178.1_g000021
rosa_roxburghii	Rroxscaffold_1G00050990
rosa_rugosa	Rorug05G0111500
rosa_samantha	Rh5AG203800 Rh5BG202100 Rh5CG222800 Rh5DG205400
rosa_wichuraiana	Rw5G018450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	442, 581
AciI	CCGC	2 cut(s)	732, 960
AclWI	GGATC	2 cut(s)	92, 289
AcoI	YGGCCR	3 cut(s)	210, 622, 918
AcsI	RAATTY	1 cut(s)	356
AfaI	GTAC	2 cut(s)	188, 1019
AfiI	CCNNNNNNNGG	2 cut(s)	350, 685
AgsI	TTSAA	8 cut(s)	139, 182, 323, 427, 588, 635, 655, 930
AjiI	CACGTC	1 cut(s)	784
AjnI	CCWGG	2 cut(s)	445, 700
AluBI	AGCT	4 cut(s)	495, 613, 850, 896
AluI	AGCT	4 cut(s)	495, 613, 850, 896
Alw21I	GWGCWC	1 cut(s)	615
Alw26I	GTCTC	1 cut(s)	891
AlwI	GGATC	2 cut(s)	92, 289
AoxI	GGCC	4 cut(s)	210, 244, 622, 918
ApeKI	GCWGC	1 cut(s)	896
ApoI	RAATTY	1 cut(s)	356
ArsI	GACNNNNNNTTYG	2 cut(s)	367, 399
AspS9I	GGNCC	1 cut(s)	67
AsuC2I	CCSGG	1 cut(s)	557
AsuHPI	GGTGA	1 cut(s)	6
AvaII	GGWCC	1 cut(s)	67
BaeGI	GKGCMC	1 cut(s)	1058
BalI	TGGCCA	2 cut(s)	212, 624
BanII	GRGCYC	2 cut(s)	556, 615
BbsI	GAAGAC	1 cut(s)	737
Bbv12I	GWGCWC	1 cut(s)	615
BbvI	GCAGC	1 cut(s)	883
BccI	CCATC	6 cut(s)	20, 139, 263, 302, 614, 688
BceAI	ACGGC	1 cut(s)	231
BciT130I	CCWGG	2 cut(s)	447, 702
BcnI	CCSGG	1 cut(s)	557
BcoDI	GTCTC	1 cut(s)	891
BfaI	CTAG	2 cut(s)	525, 900
BfmI	CTRYAG	2 cut(s)	288, 496
BisI	GCNGC	1 cut(s)	897
BlsI	GCNGC	1 cut(s)	898
Bme1390I	CCNGG	3 cut(s)	447, 557, 702
Bme18I	GGWCC	1 cut(s)	67
BmgBI	CACGTC	1 cut(s)	784
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	1 cut(s)	68
BmrFI	CCNGG	3 cut(s)	447, 557, 702
BmrI	ACTGGG	1 cut(s)	52
BmsI	GCATC	5 cut(s)	37, 118, 248, 845, 983
BmuI	ACTGGG	1 cut(s)	52
BoxI	GACNNNNGTC	1 cut(s)	792
BpiI	GAAGAC	1 cut(s)	737
BpmI	CTGGAG	3 cut(s)	282, 468, 899
BpuEI	CTTGAG	2 cut(s)	876, 884
BpuMI	CCSGG	1 cut(s)	557
BsaJI	CCNNGG	3 cut(s)	486, 555, 1008
BsaXI	ACNNNNNCTCC	5 cut(s)	21, 26, 51, 280, 310
Bsc4I	CCNNNNNNNGG	2 cut(s)	350, 685
Bse118I	RCCGGY	2 cut(s)	824, 920
Bse1I	ACTGG	2 cut(s)	47, 299
BseBI	CCWGG	2 cut(s)	447, 702
BseDI	CCNNGG	3 cut(s)	486, 555, 1008
BseGI	GGATG	4 cut(s)	31, 52, 109, 789
BseLI	CCNNNNNNNGG	2 cut(s)	350, 685
BseMII	CTCAG	2 cut(s)	704, 1005
BseNI	ACTGG	2 cut(s)	47, 299
BseRI	GAGGAG	4 cut(s)	366, 879, 896, 1037
BseSI	GKGCMC	1 cut(s)	1058
BseXI	GCAGC	1 cut(s)	883
Bsh1236I	CGCG	2 cut(s)	442, 581
BshFI	GGCC	4 cut(s)	212, 246, 624, 920
BsiHKAI	GWGCWC	1 cut(s)	615
BsiSI	CCGG	3 cut(s)	557, 825, 921
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	2 cut(s)	350, 685
BsmAI	GTCTC	1 cut(s)	891
BsmFI	GGGAC	1 cut(s)	80
BsmI	GAATGC	2 cut(s)	89, 223
BsnI	GGCC	4 cut(s)	212, 246, 624, 920
Bsp1286I	GDGCHC	3 cut(s)	556, 615, 1058
Bsp143I	GATC	2 cut(s)	97, 281
BspACI	CCGC	2 cut(s)	732, 960
BspANI	GGCC	4 cut(s)	212, 246, 624, 920
BspCNI	CTCAG	2 cut(s)	703, 1006
BspFNI	CGCG	2 cut(s)	442, 581
BspHI	TCATGA	1 cut(s)	304
BspLI	GGNNCC	1 cut(s)	68
BspPI	GGATC	2 cut(s)	92, 289
BsrFI	RCCGGY	2 cut(s)	824, 920
BsrI	ACTGG	2 cut(s)	47, 299
BssAI	RCCGGY	2 cut(s)	824, 920
BssECI	CCNNGG	3 cut(s)	486, 555, 1008
BssMI	GATC	2 cut(s)	97, 281
BssT1I	CCWWGG	1 cut(s)	1008
Bst2UI	CCWGG	2 cut(s)	447, 702
Bst4CI	ACNGT	1 cut(s)	292
BstAPI	GCANNNNNTGC	2 cut(s)	115, 725
BstC8I	GCNNGC	2 cut(s)	822, 922
BstDEI	CTNAG	2 cut(s)	690, 1014
BstDSI	CCRYGG	1 cut(s)	486
BstENI	CCTNNNNNAGG	1 cut(s)	348
BstF5I	GGATG	4 cut(s)	31, 52, 109, 789
BstFNI	CGCG	2 cut(s)	442, 581
BstKTI	GATC	2 cut(s)	100, 284
BstMAI	GTCTC	1 cut(s)	891
BstMBI	GATC	2 cut(s)	97, 281
BstMWI	GCNNNNNNNGC	3 cut(s)	115, 218, 725
BstNI	CCWGG	2 cut(s)	447, 702
BstPAI	GACNNNNGTC	1 cut(s)	792
BstSCI	CCNGG	3 cut(s)	445, 555, 700
BstSFI	CTRYAG	2 cut(s)	288, 496
BstSLI	GKGCMC	1 cut(s)	1058
BstUI	CGCG	2 cut(s)	442, 581
BstV1I	GCAGC	1 cut(s)	883
BstV2I	GAAGAC	1 cut(s)	737
BsuRI	GGCC	4 cut(s)	212, 246, 624, 920
BtgI	CCRYGG	1 cut(s)	486
BtrI	CACGTC	1 cut(s)	784
BtsCI	GGATG	4 cut(s)	31, 52, 109, 789
BtsIMutI	CAGTG	1 cut(s)	952
Cac8I	GCNNGC	2 cut(s)	822, 922
CciI	TCATGA	1 cut(s)	304
Cfr10I	RCCGGY	2 cut(s)	824, 920
Cfr13I	GGNCC	1 cut(s)	67
Csp6I	GTAC	2 cut(s)	187, 1018
CviAII	CATG	3 cut(s)	71, 305, 1028
CviQI	GTAC	2 cut(s)	187, 1018
DdeI	CTNAG	2 cut(s)	690, 1014
DpnI	GATC	2 cut(s)	99, 283
DpnII	GATC	2 cut(s)	97, 281
EaeI	YGGCCR	3 cut(s)	210, 622, 918
EciI	GGCGGA	1 cut(s)	975
Ecl136II	GAGCTC	1 cut(s)	613
Eco130I	CCWWGG	1 cut(s)	1008
Eco24I	GRGCYC	2 cut(s)	556, 615
Eco47I	GGWCC	1 cut(s)	67
Eco53kI	GAGCTC	1 cut(s)	613
EcoICRI	GAGCTC	1 cut(s)	613
EcoNI	CCTNNNNNAGG	1 cut(s)	348
EcoRII	CCWGG	2 cut(s)	445, 700
EcoT14I	CCWWGG	1 cut(s)	1008
EcoT38I	GRGCYC	2 cut(s)	556, 615
ErhI	CCWWGG	1 cut(s)	1008
FaeI	CATG	3 cut(s)	74, 308, 1031
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	3 cut(s)	70, 304, 1027
FauI	CCCGC	1 cut(s)	739
FauNDI	CATATG	2 cut(s)	568, 607
Fnu4HI	GCNGC	1 cut(s)	897
FokI	GGATG	4 cut(s)	38, 59, 96, 776
FriOI	GRGCYC	2 cut(s)	556, 615
Fsp4HI	GCNGC	1 cut(s)	897
FspBI	CTAG	2 cut(s)	525, 900
GluI	GCNGC	1 cut(s)	897
GsuI	CTGGAG	3 cut(s)	282, 468, 899
HaeIII	GGCC	4 cut(s)	212, 246, 624, 920
HapII	CCGG	3 cut(s)	557, 825, 921
Hin1II	CATG	3 cut(s)	74, 308, 1031
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HinfI	GANTC	6 cut(s)	501, 651, 658, 884, 903, 942
HpaII	CCGG	3 cut(s)	557, 825, 921
HphI	GGTGA	1 cut(s)	6
Hpy166II	GTNNAC	2 cut(s)	40, 787
Hpy188I	TCNGA	1 cut(s)	693
Hpy188III	TCNNGA	6 cut(s)	305, 427, 655, 662, 763, 797
Hpy8I	GTNNAC	2 cut(s)	40, 787
Hpy99I	CGWCG	1 cut(s)	798
HpyCH4III	ACNGT	1 cut(s)	292
HpyCH4IV	ACGT	1 cut(s)	783
HpyCH4V	TGCA	4 cut(s)	125, 239, 719, 844
HpyF10VI	GCNNNNNNNGC	3 cut(s)	115, 218, 725
HpyF3I	CTNAG	2 cut(s)	690, 1014
HpySE526I	ACGT	1 cut(s)	783
Hsp92II	CATG	3 cut(s)	74, 308, 1031
KroI	GCCGGC	1 cut(s)	920
KroNI	GCCGGC	1 cut(s)	922
Kzo9I	GATC	2 cut(s)	97, 281
LmnI	GCTCC	5 cut(s)	301, 618, 709, 733, 1024
Lsp1109I	GCAGC	1 cut(s)	883
LweI	GCATC	5 cut(s)	37, 118, 248, 845, 983
MaeI	CTAG	2 cut(s)	525, 900
MaeII	ACGT	1 cut(s)	783
MaeIII	GTNAC	3 cut(s)	12, 527, 779
MalI	GATC	2 cut(s)	99, 283
MboI	GATC	2 cut(s)	97, 281
MboII	GAAGA	3 cut(s)	311, 330, 737
MfeI	CAATTG	1 cut(s)	630
MhlI	GDGCHC	3 cut(s)	556, 615, 1058
MlsI	TGGCCA	2 cut(s)	212, 624
MluCI	AATT	6 cut(s)	356, 519, 630, 696, 800, 925
MluNI	TGGCCA	2 cut(s)	212, 624
MlyI	GAGTC	3 cut(s)	495, 893, 912
MnlI	CCTC	9 cut(s)	49, 265, 272, 344, 507, 613, 874, 900, 1015
Mox20I	TGGCCA	2 cut(s)	212, 624
MroNI	GCCGGC	1 cut(s)	920
MscI	TGGCCA	2 cut(s)	212, 624
MseI	TTAA	4 cut(s)	408, 534, 675, 771
MslI	CAYNNNNRTG	1 cut(s)	596
Msp20I	TGGCCA	2 cut(s)	212, 624
MspA1I	CMGCKG	1 cut(s)	734
MspI	CCGG	3 cut(s)	557, 825, 921
MspR9I	CCNGG	3 cut(s)	447, 557, 702
MunI	CAATTG	1 cut(s)	630
Mva1269I	GAATGC	2 cut(s)	89, 223
MvaI	CCWGG	2 cut(s)	447, 702
MvnI	CGCG	2 cut(s)	442, 581
MwoI	GCNNNNNNNGC	3 cut(s)	115, 218, 725
NaeI	GCCGGC	1 cut(s)	922
NciI	CCSGG	1 cut(s)	557
NdeI	CATATG	2 cut(s)	568, 607
NdeII	GATC	2 cut(s)	97, 281
NgoMIV	GCCGGC	1 cut(s)	920
NlaIII	CATG	3 cut(s)	74, 308, 1031
NlaIV	GGNNCC	1 cut(s)	68
NmuCI	GTSAC	3 cut(s)	12, 527, 779
PagI	TCATGA	1 cut(s)	304
PctI	GAATGC	2 cut(s)	89, 223
PdiI	GCCGGC	1 cut(s)	922
PfeI	GAWTC	3 cut(s)	651, 658, 942
PkrI	GCNGC	1 cut(s)	898
PleI	GAGTC	3 cut(s)	495, 892, 911
PpsI	GAGTC	3 cut(s)	495, 892, 911
PshAI	GACNNNNGTC	1 cut(s)	792
Psp124BI	GAGCTC	1 cut(s)	615
Psp6I	CCWGG	2 cut(s)	445, 700
PspGI	CCWGG	2 cut(s)	445, 700
PspN4I	GGNNCC	1 cut(s)	68
PspPI	GGNCC	1 cut(s)	67
RsaI	GTAC	2 cut(s)	188, 1019
RsaNI	GTAC	2 cut(s)	187, 1018
RseI	CAYNNNNRTG	1 cut(s)	596
SacI	GAGCTC	1 cut(s)	615
SaqAI	TTAA	4 cut(s)	408, 534, 675, 771
SatI	GCNGC	1 cut(s)	897
Sau3AI	GATC	2 cut(s)	97, 281
Sau96I	GGNCC	1 cut(s)	67
SchI	GAGTC	3 cut(s)	495, 893, 912
ScrFI	CCNGG	3 cut(s)	447, 557, 702
SduI	GDGCHC	3 cut(s)	556, 615, 1058
SfaNI	GCATC	5 cut(s)	37, 118, 248, 845, 983
SfcI	CTRYAG	2 cut(s)	288, 496
SinI	GGWCC	1 cut(s)	67
SmiMI	CAYNNNNRTG	1 cut(s)	596
SmlI	CTYRAG	2 cut(s)	863, 891
SmoI	CTYRAG	2 cut(s)	863, 891
Sse9I	AATT	6 cut(s)	356, 519, 630, 696, 800, 925
SsiI	CCGC	2 cut(s)	732, 960
SspMI	CTAG	2 cut(s)	525, 900
SstI	GAGCTC	1 cut(s)	615
StyD4I	CCNGG	3 cut(s)	445, 555, 700
StyI	CCWWGG	1 cut(s)	1008
TaaI	ACNGT	1 cut(s)	292
TaiI	ACGT	1 cut(s)	786
TaqI	TCGA	3 cut(s)	284, 465, 762
TasI	AATT	6 cut(s)	356, 519, 630, 696, 800, 925
TatI	WGTACW	1 cut(s)	186
TfiI	GAWTC	3 cut(s)	651, 658, 942
Tru1I	TTAA	4 cut(s)	408, 534, 675, 771
Tru9I	TTAA	4 cut(s)	408, 534, 675, 771
TscAI	CASTG	1 cut(s)	952
TseFI	GTSAC	3 cut(s)	12, 527, 779
TseI	GCWGC	1 cut(s)	896
Tsp45I	GTSAC	3 cut(s)	12, 527, 779
TspDTI	ATGAA	3 cut(s)	293, 588, 975
TspGWI	ACGGA	2 cut(s)	503, 782
TspRI	CASTG	1 cut(s)	952
VpaK11BI	GGWCC	1 cut(s)	67
XagI	CCTNNNNNAGG	1 cut(s)	348
XapI	RAATTY	1 cut(s)	356
XspI	CTAG	2 cut(s)	525, 900

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.