Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0003867

Physical Location & Seq

Genomic Coordinates Reverse (-)

20910525 .. 20920701

Gene Structure 10177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 8244 bp

ATGCTGTTAATAGGACAAAATTGCACACAGTTATATCATCCCAAACTTTCGATCGATCTTCTGTCTGAGTCAGGCTTGCTTAGTGTGGACTGTGAAAAGCAAGTCATACAATTATTGTTTGAACTAGCTCTTGAAATTGTGCTTCCACCCTTCTTAACATCAGAAAGTGTTACATCCTCGGATGTGCTTGATAATGAGTCATCAAATTTTTCAATAATGACCACATCAGGTTCATTTCATCCTGATAAGGAACGGGTGTTTAACGCTGGTGCTGTCAGAGTTCTTATTCGGTCGTTACTGCTCTTTACTCCAAAGATGCAGCTTGAAGTTCTTAACCTTATTGAAAGGCTTGCTCGTGCTGGTCCCTTCAATCAGGAAAACCTCACCTCTATAGGTTGCATTGAACTTCTGCTGGAAACCATTCACCCCTTCCTTTTGGGGTCATCTCCATTACTTAAGTATGCTCTGGAGATTGTTGAAGTACTTGGGGCATACAGGCTATCTGCATCAGAACTTCGAGTGCTTATTAGATATGTGTTGCAAATGAGGTCAATGAAGTCAGGTCGTATACTTGTGCACATGATGGAAAGGTTAATTCTCATGGAGGATTCAGAAAATATTTCCCTTGCGCCATTTGTAGAGATGGACATGAGCAAGATTGGTCATGCTTCCATTCAGGTTTCTCTGGGAGAAAGATCATGGCCTCCAGCAGCTGGTTATTCATTTGTCTGTTGGTTTCAGTTTCAAAATCTCTTGAAGTTGCAAGCAAAAGAAACAGAGTCCAAAGCTGGTCCTTCTAAGAAGTGGAGCAGTTCTGCCGGGAAACATCATGAAAGGCATATTCTCCGGATATTTTCTGTTGGTGCAGCAAATAATGAAAATGCATTCTATGCAGAATTATATCTTGACGAGGATGGTGTTCTTACCCTTGCAACTAGCAATTCTTGCTCCTTATCGTTTTCAGGATTGGAACTTGAGGAAGGCAGGTGGCATCACCTTGCAGTTGTACATAGCAAGCCAAATGCTCTCGCTGGATTGTTCCAAGCCAGTGTTGCTTATGTGTATCTTGATGGAAAGCTTAGACACACAGGGAAACTAGGATATTCTCCATCTCCGATTGGAAAACCTTTGCAGGTAACCGTTGGGACTCCAGTTACTTGTGCAAGAGTTAGTGACTTGACCTGGAAGGTCCGTTCTTGCTACCTTTTTGAGGAGGTGCTCACCTCAGGTTGTATTTGTTTCATGTACATTCTTGGTAGAGGATATAGAGGGCTCTTCCAGGACACAGATCTTCTTCGTTTTGTCCCTAACCAGGCATGTGGTGGCGGTAGCATGGCTATCTTAGATACATTAGATGCTGACTTGACCTTGGCTTCTAGTACACAGAAGCTTGACATATCTAATAAGCAAGGAGACTCCAAGGCAGATGGCAGTGGAATTGTTTGGGATTTGGAGAGACTAGGTTCTCTCTCTTTACAGCTCTCTGGGAAGAAGCTTATATTTGCATTTGATGGAACCTGTGCAGAAGCTATTCGAGCATCAGGGGAGGTCTCCATGCTCAATCTAGTTGATCCATTGTCAGCGGCTGCTTCTCCTATTGGGGGTATACCACGATTTGGGCGTCTTCATGGGGATATTTACGTATGTAGGCAATGTGTAATTGGTGATACTGTCTGCCCGGTCGGTGGGATGACTGTTATCCTGGCTTTAGTTGAGGCTGCTGAGACTAGGGACATGCTACACATGGCCCTTACCTTACTGGCCTCTGCTCTTCATCAGAATCCTCAGAATGTGAGAGACATGCCGAAATGCCGGGGATACCATTTGCTGGCTGTCTTTTTGCGTCGTCGAATGTCATTGTTCGACATGCAATGTCTTGAGATATTTTTCCAGATTGCTGCCTGTGAAGCTTCATTTTCAGAACCAAGGAAGTTGAAATATAATCGAACTAATTTGTCACCAGCTACAACTATGCAAGAAACCAGTTTTGAGGAACTTAACTTGTCAAGGTTTCGTGATGAATTTTCTTCAGTCGGATCTCAAGGAGACATGGATGATTTTTCTGCCCAAAAAGATTCATTTAGTCATATTTCAGAGCTTGAAAGTGCTGATATTCCGGCTGAAACCTCAAATTGCATTGTCTTGTCAAATGAAGACATGGTTGAACATGTCTTGTTGGATTGGACATTGTGGGTAACTGCTCCAGTTGCAATTCAAATTGCACTTCTTGGTTTTCTAGAGCATCTAGTGTCCATGCACTGGTACAGAAACCATAACCTTACTGTTCTGCGCCGAATAAACCTTGTTCAACATTTGTTAGTTACGCTTCAGAGGGGTGATGTTGAAGTTCCCGTTTTGGAGAAATTGGTTGTATTGCTTGGTGTCATTTTGGAAGATGGGTTTCTCTCTTCTGAACTGGAACATGTGGTTAGGTTTGTGATTATGACATTTGATCCACCTGACTTGACACCCCGACATCCAATAATGCGTGAGGCCATGGGAAAGCATGTAATCGTGAGAAACATGCTGCTGGAGATGCTTATTGATCTACAAGTAACCATTAAATCCGAAGAGGTGCTTGAGCAGTGGCATAAGATTGTGTCTTCTAAATTGATTACATATTTTCTAGATGAATCTGTTCACCCAACAAGTATGAGATGGATCATGACTCTTCTTGGAGTTTGTCTTACTTCATCCCCTACATTTGCACTAAAATTTCGCACCAGTGGAGGTTATCAAGGCTTGACCCGGGTGCTTCCAAGCTTCTATGATTCCCCAGACATATATTACATTTTGTTCTGTCTGATATTTGGAAAGTCTGCTTATCCTAGATTGCCGGAAGTTCGTATGCTAGACTTTCATGCGCTTATGCCAAATGATGGAAGTTTTGTGGAACTGAAATTCGTAGAATTGTTGGAAGCTGTTATTGCCATGGCAAAATCTACATTTGATAGGCTGAGCGTTCAGTCAGTGCTTGCTTACCAATCTGGTAATCTTTCCCAGGTTGGTGCTGGCCTTGTGGCAGAACTTGTGAATGGAAATGCAGATATGGCTGGGGAGCTGCAAGGTGAAGCATTGATGCATAAAACATATGCGGCACGCTTAATGGGTGGGGAGGCATCGGCCCCTTTTGCTGCTACTTCGGTCTTGAGATTTATGGTTGATTTGGCAAAAATGTGTTCCCCTTTCACTGGTGTCTGCAAAAGAGCAGAGTTTCTTGAAAGCTGCATTGACCTATATTTTTCTTGTGTCAGAGCGGCCCATGCTGTGAAGATGGCAAAGGAGCTATCTGTAAAGGCAGAAGAGAAGAGCTTGAATGATTGTGACGATTCCTGTAGTTCCCAGAACACATTTTCTAGCCTACCTCATGAACAGGATCAGTCTGCCAAAACCTCCATTAGTGTTGGAAGCTTCCCTCCGGGTCAGGTGAGTTCAAGTTCTGAATACACGGCTGTTCCCCCAAATTCGGGGACTGATGATAAAGCAGAGGCCAAGGCTACTACAGCCCAGCAGGAATTACACAAATCAGTGCAAGACGATGTACAAGCTGTTCAGAGCTTAGAAAGTGTTAATGTTGACCAGGTTTCTGCCACCTCCAGCACAAATGATTATAATTTCCATAAGAAGGTCACCCTGGAGCCCATTAAACCAGTGGATTCTCAAAGTTCCACATCGTTTACCATGCTTGATTCTCCCAATTTATCAGAGAAGTCTAATTCTAGACTCCCACTTACACTCTCTCCTTCTCCTGTTTTAGCATTGACATCTTGGCTGGGAAGTACAGGCTATAATGAATCCAAATCTCCCTCAGTTGCCACTCCTTCCATTGATTCTTCTGTGACTACAACTGAATTTGATCCATCCTCAGACCTGAAGTCTCCTGAGCCTTCTACTGCAAGTACCTTTTTTTCAGCTAGTCCAAAGCTACTTCTTGAAATGGATGAATGTGGCTATGGAGGTGGTCCTTGTTCTGCTGGAGCCACTGCTGTTTTAGATTTTATTGCAGAAGTTCTGTCTGAGTTTGTGACTGAGCAAATTAAAGTATCACAAATTATAGAGGGAATCTTAGAAAGTGTTCCATTATATGTTGATGCAGATTCCATGTTGGTATTCCAGGGATTGTGCCTTAGTAGACTGATGAACTTTCTGGAAAGGCGTCTCTTGCGCGATGATGAAGAAAATGAGAAAAAGCTAGATAAATATCGTTGGTCCTCAAATTTAGATTCATTATGCTGGATGATAGTGGATCGTGCATATATGGGCGCTTTTCCTCAACCCTCTGGAATACTAAAGACACTCGAGTTCTTATTATCTATGCTACAATTGGCAAATAAAGATGGTCAAATTGAAGAAGCTACTCCTAGTGGGAAGAGCCTATTATCTATTGGAAGAGGGAGCAGACAACTTGATGCTTATATACATTCAATTCTTAAAAATACAAATCGTATGATACTGTATTGTTTTCTGCCATCATTCTTGTCTTCAGTAGGAGAAGATGATCTGCTTTTGTGCTTAGGTTTGCTAGTTGAATCAAAGAAGAGAGTTTCCTCCAACTCTTCACTTGATAATTCAGGAATTGATATCTGCACAGTCTTACAGTTATTAGTTGCTCACAGGCAAATTATATTCTGTCCCAGCAATATGGATACAGATATAAATTGTTGTCTTTGTGTCAATTTAATCTCTCTCCTCCGTGACCAACGACAGAATGTGCAGAACTTGGCTGTTGATATTGTCAAGTATCTCCTGGTGCATCGTCGGGTGGCTCTAGAAGATCTGCTGGTCTCAAAGCCAAACCAAGGACAGCAACTGGATGTGCTTCATGGGGGATTTGACAAGTTATTGACTGAAAATTTATCTGCTTTCTTTGAATGGCTTCAAAGTTCTGAAGTGATGGTGAATAAAGTACTAGAGCAGTGTGCTTCCATTATGTGGGTACAGTATATTACTGGATCAGCAAAATTCCCAGGAGTGAGAATTAAAGGTATGGAGGGTCGTCGCAAGAGAGAAATGGGGAGAAAATCAAGGGATACATCAAAGTTAGATCTAAAGCACTGGGAGCAGGTGAATGAACGGAGATATGCACTAGAATTGGTGCGCGATGCAATGTCCACTGAGCTAAGAGTTGTGCGTCAAGACAAGTATGGATGGGTTCTTCATGCTGAGAGCAAGTGGCAAACCCATCTTCAACAACTTGTCCATGAGCGGGGAATATTCCCAATGCGAAAATCCTCTGTTAAACAGGATCGATCTGATTGGCAGCTTTGTCCAATTGAAGGTCCATACAGGATGCGCAAAAAACTTGAGCGCTGCAGATTGAAACTTGATACCATCCAAAATGTTCTTGATGGACAATTTGAAGTAGGGAAAGCAGAGCTGTCCAAAGAGAAAAATGAGAATGATCTGAATGCTTCTGATAACGATTCTGAACCATTCTTTCAACTTTTGACTGATAGTGCCAAACAGAATGGCCTTGATGGTGAGCTGTATGATGGATCATTTTTTAAAAAACCAGATAATGCCAAAGATGTTGCTTCTGTTAGGACTGAATGGAATGATGATAGAGCTAGTAGTCTCAATGAAGCAAGTTTGCACTCTGCACTCGAGTTTGGTGGCAAATCTAGTTCAGCATCTATCCCCATAGATGACAGTGTACAAGAAAGATCTGATCTAGGGTCTCCATGGCAATCTTCTTCTGCAAGAATTGATGACATCAAAGTCACAGATGATAAATCAGATAAGGAACTTCATGATAATGGTGAATACCTGATCAGACCTTATCTGGAACCTTTTGAAAAGATACGATTTCGGTACAATTGTGAACGAGTTATGGGTCTGGACAAGCATGATGGTATATTTTTAATCGGCGAGCTTTCTCTGTATGTGATTGAAAATTTCTATATCGATGACTCTGGGTGTATTTGTGAAAAGGAATGCGAAGATGAACTCTCTATGATCGATCAGGCTCTTGGTGTAAAGAAGGATGTTAATTTGGATTTCCAGTCAAAGTCAACTTCATCGTGGGGAGCAACAGAAAAGTCAGGAGTTGGGGGAAGAGCGTGGGCCTATAATGGTGGTGCATGGGGAAAGGAGAAAGTCTGTACTAGTGGTAGTCTACCTCACCCTTGGAACATGTGGAAACTTAACAGTGTTCATGAGCTTTTGAAGCGTGATTACCAGCTGCGTCCTGTTGCTGTTGAAATTTTTAGCATGGATGGATGTAATGATCTCCTGGTGTTCCACAAAAAAGAAAGGGAAGAAGTTTTCAGAAATCTAGTAGCCATGAATCTTCCTAGAAATAGCATGTTGGACACAACCATATCAGGATCAGCAAAACAAGAAGTCAATGAGGGTAGCCGACTATTTAAGTCAATGGCCAAGTCCTTTTCAAAGAGATGGCAAAATGGAGAAATAAGCAATTTCCAGTACCTCATGCATCTCAACACGTTGGCAGGACGGGGGTACAGTGATCTTACCCAATATCCAGTTTTTCCATGGGTTCTTGCAGATTACGAGAGTGAAAACCTGGACTTGTTAGATCCAAAAACATTTCGTGGACTTGACAAGCCGATGGGTTGTCAAATGTTAGAGGGCGAAGAAGAATTCAGGAAAAGGTACGAGAGCTGGGATGATCCGGAGGTCCCAAAATTCCATTATGGTTCTCATTATTCCAGTGCTGGGATTGTCCTCTTCTATCTTCTACGCCTACCACCTTTCAGTGCAGAGAATCAAAAGCTACAAGGAGGGCAATTTGACCATGATGATCGTCTTTTTAATAGTATTAGAGATACTTGGTTCAGTGCAGCTGGAAAGGGCAACACATCAGATGTGAAGGAGTTGATTCCCGAATTTTTCTACATGCCAGAATTCCTGGAAAATCGTTGGAATCTTGATTTGGGTGAGAAACAATCAGGAGAGAAGGTTGGTGATGTTGGCTTACCTCCATGGGCTAAAGGCAGTGCTAGAGAATTCATCAGGAAGCACAGGGAGGCCCTGGAATCTGATTACGTTTCAAAAAATTTGCATCATTGGATAGATCTCGTTTTTGGATATAAACAGAGAGGAAAGGCAGCTGAGGAAGCTGTGAATGTTTTCTATCACTACACGTACGAGGGGAGTGTAGACATAGACTCAGTGACAGATCCTGCAATGAAAGCCTCAATTCTAGCACAAATTAATCATTTTGGGCAGACACCCAAACAGTTATTTCTCAAACCCCATGTGGAAAGGCAGGTCAACAGAAGGGTTCCTCATCCACTCAAGTACTCAAACCATCTTGTTCAGCATGAGATACGCAAGACATCGTCTTCTATAACTCAGATTGTTACTGTCAACGAGAAAATCCTAGTGGCAGGAACAAATTGTTTGCTTAAGCCAAGAACGTATGCCAAGTATGTTGCATGGGGTTTTCCAGATCGTAGCTTAAGATTTATGAACTATGATCAAGATCGACTCCTATCCACACACGAGAATCTTCATGGGGGCAACCAGATTCAGTGTACTGGCGTTAGCCATGATGGTCAGATTCTGGTCACTGGGGCTGATGATGGCTTAGTTTCTGTTTGGAGAATCAGTAATTACAGTCCTCGTGTTTTGAGACGCTTGCAGTTGGAGAAGGCACTTTGTGCCCACACATCCAAAATTACATGTCTTCATGTAAGCCAGCCTTACATGCTGATTGTGAGTGGATCAGATGACTGCACTGTTGTTGTATGGGATCTCAGCTCCTTGGTTTTTGTTAGGCAGCTCTCTGAGTTTCCAGCGCCAATTTCTGCAATTTATGTGAATGACTTGACAGGGGAAATTGTGACGGCAGCTGGAATTTTACTTGCAGTTTGGAGCGTTAATGGGGACTGTCTTGCAATGGTTAACACGTCTCAACTGCCTTCTGATTCAATTCTTTCTGTGACAAGTAGTTCATTTTCTGATTGGCTGGATACAAACTGGTTTGTAACCGGTCATCAGAGTGGGGCTGTTAAGGTTTGGCAAATGGTTCACCACACCAACCTCGAGAGTTCCCAACAGAAGTCAACGAGCAATGGATTGGGGGGTTTAAATCTCAATGATAAAGCACCAGAGTACAGGTTGGTCCTTCACAAGGTGCTCAAGTTTCATAAGCATCCCGTTACTGCCCTTCTCCTTACAAATGACCTCAAGCAGTTACTAAGCGGGGATTCTGGCGGGCATTTGCTGTCATGGACAGTGCCAGATGAGAGCTTGAGAGCTTCAATGAATCAGGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0000932 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0006996 GO:0007033 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009825 GO:0009845 GO:0009888 GO:0009987 GO:0010026 GO:0010033 GO:0010090 GO:0010154 GO:0016043 GO:0016049 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0032501 GO:0032502 GO:0032504 GO:0032879 GO:0032989 GO:0032991 GO:0033554 GO:0033962 GO:0033993 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048468 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050896 GO:0051049 GO:0051716 GO:0060341 GO:0061458 GO:0065003 GO:0065007 GO:0070925 GO:0071214 GO:0071470 GO:0071472 GO:0071826 GO:0071840 GO:0080001 GO:0090351 GO:0090558 GO:0090626 GO:0097305 GO:0104004 GO:1901700 GO:1903335 GO:1904580 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Beach Laminin_G_3 PH_BEACH WD40

Protein Analysis

2748

Amino Acids

306.93

Weight (kDa)

5.6

Isoelectric Point (pI)

41.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PH_BEACH	PF14844	2043 - 2092	6.7e-07	PH domain associated with Beige/BEACH
Beach	PF02138	2131 - 2410	1.4e-118	Beige/BEACH domain
WD40_CDC20-Fz	PF24807	2456 - 2616	2.1e-08	CDC20/Fizzy WD40 domain
Beta-prop_THOC3	PF25174	2461 - 2596	1.2e-12	THOC3 beta-propeller domain
WD40_Prp19	PF24814	2463 - 2615	3.2e-11	Prp19 WD40 domain
Beta-prop_WDR5	PF25175	2466 - 2668	5.3e-15	WDR5 beta-propeller domain
NBCH_WD40	PF20426	2466 - 2625	1.7e-10	Neurobeachin beta propeller domain
Beta-prop_TEP1_2nd	PF25047	2486 - 2662	6.9e-08	TEP-1 second beta-propeller
WDR55	PF24796	2488 - 2665	6.1e-07	WDR55
Beta-prop_WDR3_1st	PF25173	2495 - 2663	2.3e-13	WDR3 first beta-propeller domain
WD40	PF00400	2539 - 2573	4.5e-06	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003867)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03060 AT1G03060 AT1G03060 AT1G03060 AT4G02660 AT4G02660 AT4G02660
fragaria_vesca	FvH4_2g22920 FvH4_2g22920 FvH4_2g22920 FvH4_2g22920 FvH4_2g22920 FvH4_2g22920 FvH4_2g22920
malus_domestica	MD03G1257800.v1.1 MD11G1278500.v1.1
prunus_persica	Prupe.8G234500_v2.0.a1 Prupe.8G234500_v2.0.a1
pyrus_communis	pycom03g20420 pycom11g24600
rosa_chinensis	RchiOBHm_Chr6g0289881
rosa_laevigata	RLG00000012262
rosa_multiflora	Rmu_ssc0000314.1_g000005
rosa_roxburghii	Rroxscaffold_7G00177500
rosa_rugosa	Rorug06G0207500 Rorug06G0207600 Rorug06G0207700 Rorug06G0207800 Rorug06G0207900
rosa_samantha	Rh6AG319100 Rh6BG326100 Rh6CG332000 Rh6DG317600
rosa_wichuraiana	Rw6G027520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3612
AarI	CACCTGC	2 cut(s)	975, 5053
AasI	GACNNNNNNGTC	1 cut(s)	5717
Acc16I	TGCGCA	1 cut(s)	5294
Acc36I	ACCTGC	4 cut(s)	975, 1123, 5053, 7222
AccB7I	CCANNNNNTGG	6 cut(s)	713, 1616, 1828, 2259, 2879, 4932
AccBSI	CCGCTC	2 cut(s)	3257, 5206
AccI	GTMKAC	5 cut(s)	568, 1606, 4132, 6115, 7122
AccII	CGCG	2 cut(s)	4167, 5100
AccIII	TCCGGA	2 cut(s)	846, 6634
AciI	CCGC	7 cut(s)	1326, 1583, 3095, 3257, 5206, 8169, 8181
AcoI	YGGCCR	1 cut(s)	6375
AcuI	CTGAAG	5 cut(s)	2013, 2312, 3893, 4467, 4908
AcyI	GRCGYC	2 cut(s)	1621, 4156
AdeI	CACNNNGTG	2 cut(s)	7625, 8101
AfeI	AGCGCT	1 cut(s)	5309
AflII	CTTAAG	3 cut(s)	455, 7370, 7423
AflIII	ACRYGT	7 cut(s)	2167, 2422, 6132, 6444, 7104, 7646, 7872
AgeI	ACCGGT	1 cut(s)	7955
AhdI	GACNNNNNGTC	1 cut(s)	3874
AhlI	ACTAGT	1 cut(s)	6104
AjiI	CACGTC	1 cut(s)	7875
AjuI	GAANNNNNNNTTGG	2 cut(s)	6878, 6910
AloI	GAACNNNNNNTCC	2 cut(s)	1177, 1209
Alw21I	GWGCWC	3 cut(s)	579, 1221, 8106
Alw44I	GTGCAC	1 cut(s)	575
AlwNI	CAGNNNCTG	5 cut(s)	713, 1586, 4810, 7145, 7528
Ama87I	CYCGRG	4 cut(s)	2748, 4298, 5603, 8009
Aor13HI	TCCGGA	2 cut(s)	846, 6634
Aor51HI	AGCGCT	1 cut(s)	5309
ApaLI	GTGCAC	1 cut(s)	575
AseI	ATTAAT	1 cut(s)	7176
AsiGI	ACCGGT	1 cut(s)	7955
Asp700I	GAANNNNTTC	6 cut(s)	420, 1530, 2637, 4074, 4875, 7091
AspLEI	GCGC	9 cut(s)	631, 2292, 2866, 4167, 4265, 5100, 5295, 5310, 7765
AsuC2I	CCSGG	6 cut(s)	820, 1679, 1814, 2749, 2750, 3420
AvaI	CYCGRG	4 cut(s)	2748, 4298, 5603, 8009
AvaII	GGWCC	8 cut(s)	362, 791, 1189, 3962, 4209, 5279, 6640, 8089
AxyI	CCTNAGG	1 cut(s)	1225
BaeGI	GKGCMC	2 cut(s)	579, 7630
BaeI	ACNNNNGTAYC	2 cut(s)	5803, 5836
BalI	TGGCCA	1 cut(s)	6377
BanII	GRGCYC	2 cut(s)	1275, 3642
BarI	GAAGNNNNNNTAC	2 cut(s)	6158, 6190
BauI	CACGAG	3 cut(s)	354, 7466, 7587
BbsI	GAAGAC	6 cut(s)	1616, 2160, 2595, 4473, 7299, 7643
Bbv12I	GWGCWC	3 cut(s)	579, 1221, 8106
BbvCI	CCTCAGC	1 cut(s)	7074
BceAI	ACGGC	2 cut(s)	3465, 7827
BciVI	GTATCC	4 cut(s)	1811, 4639, 5023, 7930
BclI	TGATCA	2 cut(s)	5769, 7441
BcnI	CCSGG	6 cut(s)	820, 1679, 1814, 2749, 2750, 3420
BcuI	ACTAGT	1 cut(s)	6104
BfmI	CTRYAG	4 cut(s)	390, 3334, 3501, 5311
BfoI	RGCGCY	3 cut(s)	4266, 5311, 7766
BfrI	CTTAAG	3 cut(s)	455, 7370, 7423
BfuAI	ACCTGC	4 cut(s)	975, 1123, 5053, 7222
BfuI	GTATCC	4 cut(s)	1811, 4639, 5023, 7930
BglII	AGATCT	5 cut(s)	1288, 4774, 5044, 5663, 7036
BlpI	GCTNAGC	1 cut(s)	2957
BmcAI	AGTACT	3 cut(s)	483, 4908, 7265
Bme18I	GGWCC	8 cut(s)	362, 791, 1189, 3962, 4209, 5279, 6640, 8089
BmeRI	GACNNNNNGTC	1 cut(s)	3874
BmeT110I	CYCGRG	4 cut(s)	2748, 4298, 5603, 8009
BmgBI	CACGTC	1 cut(s)	7875
BmiI	GGNNCC	8 cut(s)	364, 1516, 3126, 3639, 3979, 5787, 6642, 7248
BmrI	ACTGGG	2 cut(s)	5065, 7545
BmuI	ACTGGG	2 cut(s)	5065, 7545
BpiI	GAAGAC	6 cut(s)	1616, 2160, 2595, 4473, 7299, 7643
BpmI	CTGGAG	8 cut(s)	488, 690, 1134, 2187, 2552, 3580, 3656, 3996
Bpu10I	CCTNAGC	3 cut(s)	3882, 4513, 7074
Bpu1102I	GCTNAGC	1 cut(s)	2957
BpuMI	CCSGG	6 cut(s)	820, 1679, 1814, 2749, 2750, 3420
Bsa29I	ATCGAT	4 cut(s)	54, 5248, 5904, 5958
BsaAI	YACGTR	2 cut(s)	1642, 7107
BsaBI	GATNNNNATC	2 cut(s)	4200, 7446
BsaHI	GRCGYC	2 cut(s)	1621, 4156
BsaI	GGTCTC	3 cut(s)	1555, 4789, 5682
BsaWI	WCCGGW	3 cut(s)	846, 6634, 7955
BsaXI	ACNNNNNCTCC	6 cut(s)	3724, 3754, 6906, 6936, 7558, 7588
Bse118I	RCCGGY	1 cut(s)	7955
Bse21I	CCTNAGG	1 cut(s)	1225
Bse3DI	GCAATG	6 cut(s)	1658, 1877, 5112, 7155, 7869, 8044
Bse8I	GATNNNNATC	2 cut(s)	4200, 7446
BseAI	TCCGGA	2 cut(s)	846, 6634
BseCI	ATCGAT	4 cut(s)	54, 5248, 5904, 5958
BseJI	GATNNNNATC	2 cut(s)	4200, 7446
BseMI	GCAATG	6 cut(s)	1658, 1877, 5112, 7155, 7869, 8044
BseRI	GAGGAG	2 cut(s)	1226, 4679
BseSI	GKGCMC	2 cut(s)	579, 7630
BseYI	CCCAGC	6 cut(s)	3053, 3507, 3772, 4634, 6624, 6677
BsgI	GTGCAG	8 cut(s)	885, 1542, 4570, 4733, 5583, 6741, 6822, 7684
Bsh1236I	CGCG	2 cut(s)	4167, 5100
Bsh1285I	CGRYCG	3 cut(s)	54, 293, 1683
BshTI	ACCGGT	1 cut(s)	7955
BshVI	ATCGAT	4 cut(s)	54, 5248, 5904, 5958
BsiEI	CGRYCG	3 cut(s)	54, 293, 1683
BsiHKAI	GWGCWC	3 cut(s)	579, 1221, 8106
BsiHKCI	CYCGRG	4 cut(s)	2748, 4298, 5603, 8009
BsiWI	CGTACG	1 cut(s)	7107
BslFI	GGGAC	8 cut(s)	348, 1159, 1289, 1745, 3484, 4617, 6626, 7865
BsmBI	CGTCTC	3 cut(s)	4163, 7591, 7881
BsmFI	GGGAC	8 cut(s)	348, 1159, 1289, 1745, 3484, 4617, 6626, 7865
BsmI	GAATGC	3 cut(s)	884, 5413, 5939
Bso31I	GGTCTC	3 cut(s)	1555, 4789, 5682
BsoBI	CYCGRG	4 cut(s)	2748, 4298, 5603, 8009
Bsp1286I	GDGCHC	6 cut(s)	579, 1221, 1275, 3642, 7630, 8106
Bsp13I	TCCGGA	2 cut(s)	846, 6634
Bsp1407I	TGTACA	4 cut(s)	1006, 1245, 3541, 5653
Bsp1720I	GCTNAGC	1 cut(s)	2957
Bsp19I	CCATGG	5 cut(s)	2496, 2931, 5681, 6494, 6944
BspACI	CCGC	7 cut(s)	1326, 1583, 3095, 3257, 5206, 8169, 8181
BspDI	ATCGAT	4 cut(s)	54, 5248, 5904, 5958
BspEI	TCCGGA	2 cut(s)	846, 6634
BspFNI	CGCG	2 cut(s)	4167, 5100
BspHI	TCATGA	5 cut(s)	829, 2664, 3367, 5749, 6154
BspLI	GGNNCC	8 cut(s)	364, 1516, 3126, 3639, 3979, 5787, 6642, 7248
BspMAI	CTGCAG	1 cut(s)	5315
BspMI	ACCTGC	4 cut(s)	975, 1123, 5053, 7222
BspQI	GCTCTTC	5 cut(s)	1280, 1776, 3302, 4364, 6049
BspTI	CTTAAG	3 cut(s)	455, 7370, 7423
BspTNI	GGTCTC	3 cut(s)	1555, 4789, 5682
BsrBI	CCGCTC	2 cut(s)	3257, 5206
BsrDI	GCAATG	6 cut(s)	1658, 1877, 5112, 7155, 7869, 8044
BsrFI	RCCGGY	1 cut(s)	7955
BsrGI	TGTACA	4 cut(s)	1006, 1245, 3541, 5653
BssAI	RCCGGY	1 cut(s)	7955
BssNAI	GTATAC	2 cut(s)	569, 1607
BssNI	GRCGYC	2 cut(s)	1621, 4156
BssSI	CACGAG	3 cut(s)	354, 7466, 7587
Bst1107I	GTATAC	2 cut(s)	569, 1607
Bst2BI	CACGAG	3 cut(s)	354, 7466, 7587
BstACI	GRCGYC	2 cut(s)	1621, 4156
BstAFI	CTTAAG	3 cut(s)	455, 7370, 7423
BstAPI	GCANNNNNTGC	3 cut(s)	890, 945, 7625
BstAUI	TGTACA	4 cut(s)	1006, 1245, 3541, 5653
BstBAI	YACGTR	2 cut(s)	1642, 7107
BstDSI	CCRYGG	5 cut(s)	2496, 2931, 5681, 6494, 6944
BstEII	GGTNACC	2 cut(s)	1135, 3628
BstENI	CCTNNNNNAGG	2 cut(s)	1208, 8096
BstFNI	CGCG	2 cut(s)	4167, 5100
BstH2I	RGCGCY	3 cut(s)	4266, 5311, 7766
BstHHI	GCGC	9 cut(s)	631, 2292, 2866, 4167, 4265, 5100, 5295, 5310, 7765
BstMCI	CGRYCG	3 cut(s)	54, 293, 1683
BstPI	GGTNACC	2 cut(s)	1135, 3628
BstSFI	CTRYAG	4 cut(s)	390, 3334, 3501, 5311
BstSLI	GKGCMC	2 cut(s)	579, 7630
BstSNI	TACGTA	1 cut(s)	1642
BstUI	CGCG	2 cut(s)	4167, 5100
BstV2I	GAAGAC	6 cut(s)	1616, 2160, 2595, 4473, 7299, 7643
BstX2I	RGATCY	9 cut(s)	1288, 2036, 4774, 5044, 5663, 6538, 7036, 7141, 7717
BstXI	CCANNNNNNTGG	2 cut(s)	1319, 4642
BstYI	RGATCY	9 cut(s)	1288, 2036, 4774, 5044, 5663, 6538, 7036, 7141, 7717
BstZ17I	GTATAC	2 cut(s)	569, 1607
Bsu15I	ATCGAT	4 cut(s)	54, 5248, 5904, 5958
Bsu36I	CCTNAGG	1 cut(s)	1225
BsuI	GTATCC	4 cut(s)	1811, 4639, 5023, 7930
BsuTUI	ATCGAT	4 cut(s)	54, 5248, 5904, 5958
BtgI	CCRYGG	5 cut(s)	2496, 2931, 5681, 6494, 6944
BtgZI	GCGATG	2 cut(s)	4182, 5115
BtrI	CACGTC	1 cut(s)	7875
BtsI	GCAGTG	5 cut(s)	1438, 2591, 3981, 4922, 6964
BveI	ACCTGC	4 cut(s)	975, 1123, 5053, 7222
CaiI	CAGNNNCTG	5 cut(s)	713, 1586, 4810, 7145, 7528
CciI	TCATGA	5 cut(s)	829, 2664, 3367, 5749, 6154
CfoI	GCGC	9 cut(s)	631, 2292, 2866, 4167, 4265, 5100, 5295, 5310, 7765
Cfr10I	RCCGGY	1 cut(s)	7955
Cfr9I	CCCGGG	1 cut(s)	2748
ClaI	ATCGAT	4 cut(s)	54, 5248, 5904, 5958
CseI	GACGC	6 cut(s)	1610, 1832, 4145, 5120, 6173, 7608
CsiI	ACCWGGT	1 cut(s)	3579
CspAI	ACCGGT	1 cut(s)	7955
CspCI	CAANNNNNGTGG	2 cut(s)	2445, 2480
DraI	TTTAAA	2 cut(s)	5506, 8055
DraIII	CACNNNGTG	2 cut(s)	7625, 8101
DrdI	GACNNNNNNGTC	1 cut(s)	5717
DriI	GACNNNNNGTC	1 cut(s)	3874
DseDI	GACNNNNNNGTC	1 cut(s)	5717
EaeI	YGGCCR	1 cut(s)	6375
Eam1105I	GACNNNNNGTC	1 cut(s)	3874
Eco105I	TACGTA	1 cut(s)	1642
Eco24I	GRGCYC	2 cut(s)	1275, 3642
Eco31I	GGTCTC	3 cut(s)	1555, 4789, 5682
Eco32I	GATATC	1 cut(s)	4582
Eco47I	GGWCC	8 cut(s)	362, 791, 1189, 3962, 4209, 5279, 6640, 8089
Eco47III	AGCGCT	1 cut(s)	5309
Eco57I	CTGAAG	5 cut(s)	2013, 2312, 3893, 4467, 4908
Eco81I	CCTNAGG	1 cut(s)	1225
Eco88I	CYCGRG	4 cut(s)	2748, 4298, 5603, 8009
Eco91I	GGTNACC	2 cut(s)	1135, 3628
EcoNI	CCTNNNNNAGG	2 cut(s)	1208, 8096
EcoO109I	RGGNCCY	2 cut(s)	6640, 6991
EcoO65I	GGTNACC	2 cut(s)	1135, 3628
EcoRI	GAATTC	3 cut(s)	6602, 6866, 6968
EcoRV	GATATC	1 cut(s)	4582
EcoT22I	ATGCAT	3 cut(s)	886, 3084, 6438
EcoT38I	GRGCYC	2 cut(s)	1275, 3642
Esp3I	CGTCTC	3 cut(s)	4163, 7591, 7881
FalI	AAGNNNNNCTT	4 cut(s)	2562, 2594, 7651, 7683
FaqI	GGGAC	8 cut(s)	348, 1159, 1289, 1745, 3484, 4617, 6626, 7865
FauI	CCCGC	3 cut(s)	5199, 8162, 8174
FauNDI	CATATG	1 cut(s)	3091
FbaI	TGATCA	2 cut(s)	5769, 7441
FblI	GTMKAC	5 cut(s)	568, 1606, 4132, 6115, 7122
FriOI	GRGCYC	2 cut(s)	1275, 3642
FspI	TGCGCA	1 cut(s)	5294
GlaI	GCGC	9 cut(s)	630, 2291, 2865, 4166, 4264, 5099, 5294, 5309, 7764
GsaI	CCCAGC	6 cut(s)	3057, 3511, 3776, 4638, 6628, 6681
GsuI	CTGGAG	8 cut(s)	488, 690, 1134, 2187, 2552, 3580, 3656, 3996
HaeII	RGCGCY	3 cut(s)	4266, 5311, 7766
HgaI	GACGC	6 cut(s)	1610, 1832, 4145, 5120, 6173, 7608
HhaI	GCGC	9 cut(s)	631, 2292, 2866, 4167, 4265, 5100, 5295, 5310, 7765
Hin1I	GRCGYC	2 cut(s)	1621, 4156
Hin6I	GCGC	9 cut(s)	629, 2290, 2864, 4165, 4263, 5098, 5293, 5308, 7763
HinP1I	GCGC	9 cut(s)	629, 2290, 2864, 4165, 4263, 5098, 5293, 5308, 7763
HincII	GTYRAC	6 cut(s)	3577, 6012, 7237, 7333, 7870, 8031
HindII	GTYRAC	6 cut(s)	3577, 6012, 7237, 7333, 7870, 8031
HindIII	AAGCTT	6 cut(s)	1076, 1388, 1493, 1908, 2761, 3409
HpaI	GTTAAC	1 cut(s)	7870
Hpy99I	CGWCG	4 cut(s)	1848, 1851, 4761, 5001
HpyCH4IV	ACGT	6 cut(s)	1641, 6446, 7008, 7106, 7382, 7874
HpySE526I	ACGT	6 cut(s)	1641, 6446, 7008, 7106, 7382, 7874
Hsp92I	GRCGYC	2 cut(s)	1621, 4156
HspAI	GCGC	9 cut(s)	629, 2290, 2864, 4165, 4263, 5098, 5293, 5308, 7763
Kpn2I	TCCGGA	2 cut(s)	846, 6634
Ksp22I	TGATCA	2 cut(s)	5769, 7441
KspAI	GTTAAC	1 cut(s)	7870
LguI	GCTCTTC	5 cut(s)	1280, 1776, 3302, 4364, 6049
MabI	ACCWGGT	1 cut(s)	3579
MaeII	ACGT	6 cut(s)	1641, 6446, 7008, 7106, 7382, 7874
MbiI	CCGCTC	2 cut(s)	3257, 5206
MfeI	CAATTG	3 cut(s)	4322, 5271, 5815
MflI	RGATCY	9 cut(s)	1288, 2036, 4774, 5044, 5663, 6538, 7036, 7141, 7717
MhlI	GDGCHC	6 cut(s)	579, 1221, 1275, 3642, 7630, 8106
MlsI	TGGCCA	1 cut(s)	6377
MluNI	TGGCCA	1 cut(s)	6377
MmeI	TCCRAC	8 cut(s)	2014, 2157, 2895, 3385, 4575, 6288, 6863, 7590
Mox20I	TGGCCA	1 cut(s)	6377
Mph1103I	ATGCAT	3 cut(s)	886, 3084, 6438
MroI	TCCGGA	2 cut(s)	846, 6634
MroXI	GAANNNNTTC	6 cut(s)	420, 1530, 2637, 4074, 4875, 7091
MscI	TGGCCA	1 cut(s)	6377
MslI	CAYNNNNRTG	2 cut(s)	5754, 7965
Msp20I	TGGCCA	1 cut(s)	6377
MspA1I	CMGCKG	6 cut(s)	713, 1583, 6181, 6806, 7073, 7817
MspCI	CTTAAG	3 cut(s)	455, 7370, 7423
MunI	CAATTG	3 cut(s)	4322, 5271, 5815
Mva1269I	GAATGC	3 cut(s)	884, 5413, 5939
MvnI	CGCG	2 cut(s)	4167, 5100
NciI	CCSGG	6 cut(s)	820, 1679, 1814, 2749, 2750, 3420
NcoI	CCATGG	5 cut(s)	2496, 2931, 5681, 6494, 6944
NdeI	CATATG	1 cut(s)	3091
NlaIV	GGNNCC	8 cut(s)	364, 1516, 3126, 3639, 3979, 5787, 6642, 7248
NsbI	TGCGCA	1 cut(s)	5294
NsiI	ATGCAT	3 cut(s)	886, 3084, 6438
PaeR7I	CTCGAG	3 cut(s)	4298, 5603, 8009
PagI	TCATGA	5 cut(s)	829, 2664, 3367, 5749, 6154
PaqCI	CACCTGC	2 cut(s)	975, 5053
PciI	ACATGT	4 cut(s)	2167, 2422, 6132, 7646
PciSI	GCTCTTC	5 cut(s)	1280, 1776, 3302, 4364, 6049
PcsI	WCGNNNNNNNCGW	1 cut(s)	1618
PctI	GAATGC	3 cut(s)	884, 5413, 5939
PdmI	GAANNNNTTC	6 cut(s)	420, 1530, 2637, 4074, 4875, 7091
Pfl23II	CGTACG	1 cut(s)	7107
PflFI	GACNNNGTC	1 cut(s)	7303
PflMI	CCANNNNNTGG	6 cut(s)	713, 1616, 1828, 2259, 2879, 4932
PfoI	TCCNGGA	2 cut(s)	1278, 6870
PinAI	ACCGGT	1 cut(s)	7955
Ple19I	CGATCG	1 cut(s)	54
Ppu21I	YACGTR	2 cut(s)	1642, 7107
PpuMI	RGGWCCY	1 cut(s)	6640
PscI	ACATGT	4 cut(s)	2167, 2422, 6132, 7646
PshBI	ATTAAT	1 cut(s)	7176
PsiI	TTATAA	1 cut(s)	3612
Psp5II	RGGWCCY	1 cut(s)	6640
PspEI	GGTNACC	2 cut(s)	1135, 3628
PspFI	CCCAGC	6 cut(s)	3053, 3507, 3772, 4634, 6624, 6677
PspLI	CGTACG	1 cut(s)	7107
PspN4I	GGNNCC	8 cut(s)	364, 1516, 3126, 3639, 3979, 5787, 6642, 7248
PspPPI	RGGWCCY	1 cut(s)	6640
PspXI	VCTCGAGB	2 cut(s)	4298, 5603
PsrI	GAACNNNNNNTAC	2 cut(s)	3534, 3566
PstI	CTGCAG	1 cut(s)	5315
PstNI	CAGNNNCTG	5 cut(s)	713, 1586, 4810, 7145, 7528
PsuI	RGATCY	9 cut(s)	1288, 2036, 4774, 5044, 5663, 6538, 7036, 7141, 7717
PsyI	GACNNNGTC	1 cut(s)	7303
PvuI	CGATCG	1 cut(s)	54
PvuII	CAGCTG	5 cut(s)	713, 6181, 6806, 7073, 7817
RseI	CAYNNNNRTG	2 cut(s)	5754, 7965
SapI	GCTCTTC	5 cut(s)	1280, 1776, 3302, 4364, 6049
ScaI	AGTACT	3 cut(s)	483, 4908, 7265
SduI	GDGCHC	6 cut(s)	579, 1221, 1275, 3642, 7630, 8106
SexAI	ACCWGGT	1 cut(s)	3579
SfcI	CTRYAG	4 cut(s)	390, 3334, 3501, 5311
Sfr274I	CTCGAG	3 cut(s)	4298, 5603, 8009
SinI	GGWCC	8 cut(s)	362, 791, 1189, 3962, 4209, 5279, 6640, 8089
SlaI	CTCGAG	3 cut(s)	4298, 5603, 8009
SmaI	CCCGGG	1 cut(s)	2750
SmiMI	CAYNNNNRTG	2 cut(s)	5754, 7965
SnaBI	TACGTA	1 cut(s)	1642
SpeI	ACTAGT	1 cut(s)	6104
SsiI	CCGC	7 cut(s)	1326, 1583, 3095, 3257, 5206, 8169, 8181
SspI	AATATT	2 cut(s)	619, 5214
TaiI	ACGT	6 cut(s)	1644, 6449, 7011, 7109, 7385, 7877
TaqII	GACCGA	2 cut(s)	279, 3133
TauI	GCSGC	3 cut(s)	1586, 3098, 3260
TspGWI	ACGGA	3 cut(s)	1181, 4682, 5089
TspMI	CCCGGG	1 cut(s)	2748
Tth111I	GACNNNGTC	1 cut(s)	7303
Van91I	CCANNNNNTGG	6 cut(s)	713, 1616, 1828, 2259, 2879, 4932
Vha464I	CTTAAG	3 cut(s)	455, 7370, 7423
VneI	GTGCAC	1 cut(s)	575
VpaK11BI	GGWCC	8 cut(s)	362, 791, 1189, 3962, 4209, 5279, 6640, 8089
VspI	ATTAAT	1 cut(s)	7176
XagI	CCTNNNNNAGG	2 cut(s)	1208, 8096
XbaI	TCTAGA	4 cut(s)	2236, 2626, 3719, 4768
XcmI	CCANNNNNNNNNTGG	4 cut(s)	1319, 3008, 3649, 6492
XhoI	CTCGAG	3 cut(s)	4298, 5603, 8009
XmaI	CCCGGG	1 cut(s)	2748
XmiI	GTMKAC	5 cut(s)	568, 1606, 4132, 6115, 7122
XmnI	GAANNNNTTC	6 cut(s)	420, 1530, 2637, 4074, 4875, 7091
ZrmI	AGTACT	3 cut(s)	483, 4908, 7265
Zsp2I	ATGCAT	3 cut(s)	886, 3084, 6438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.