Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0017402

Physical Location & Seq

Genomic Coordinates Reverse (-)

3007735 .. 3008226

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g03300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGCTAAATGAATTATATGTACCGTGCAGGCTTTGCCTTGGTTCATGGGCGGAGCATGGTGAAAGGACGGGTGGTTTCTATGCATGTAACCGCTACGAGGCAGCTAAGCAAGAGGGAGCTTATGATGAAGCTGAGAGAAGAAGAGAAATGGCAAAAAATTCTCTGGAGAAATACACTCATTATTATGAACGTTGGGTAAGCAATCAGCAGGTATTCACAATTTTCTTTTTCAAAATTCCGCTGTTTCTTGTGCTATACCATGAATTCATGCAAGAGATCTTCATCGTGCCAATTTTTAACAAATTCAGTTATGTTAGTAGCCTGGCTGTGTATTTTGTCAGTGGCCTTTTTCTCAATGATCAGAGAAGATATTGCTTCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR

Protein Analysis

128

Amino Acids

15.27

Weight (kDa)

6.82

Isoelectric Point (pI)

46.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017402)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g03300 pycom04g03380
rosa_chinensis	RchiOBHm_Chr2g0127701 RchiOBHm_Chr2g0166791 RchiOBHm_Chr6g0267371
rosa_samantha	Rh2AG323700 Rh2AG398600 Rh2AG592500 Rh2BG332900 Rh2BG604000 Rh2CG385400 Rh2CG574900
rosa_wichuraiana	Rw2G026270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	199
AciI	CCGC	3 cut(s)	50, 91, 239
AclI	AACGTT	1 cut(s)	190
AcsI	RAATTY	4 cut(s)	157, 234, 263, 302
AfaI	GTAC	1 cut(s)	21
AfiI	CCNNNNNNNGG	1 cut(s)	97
AgsI	TTSAA	1 cut(s)	232
AjnI	CCWGG	1 cut(s)	321
AluBI	AGCT	3 cut(s)	104, 119, 131
AluI	AGCT	3 cut(s)	104, 119, 131
AoxI	GGCC	1 cut(s)	343
ApeKI	GCWGC	1 cut(s)	101
ApoI	RAATTY	4 cut(s)	157, 234, 263, 302
AsuHPI	GGTGA	1 cut(s)	71
BbvI	GCAGC	1 cut(s)	113
BciT130I	CCWGG	1 cut(s)	323
BclI	TGATCA	1 cut(s)	358
BfuAI	ACCTGC	1 cut(s)	199
BglII	AGATCT	1 cut(s)	276
BisI	GCNGC	1 cut(s)	102
BlpI	GCTNAGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	103
Bme1390I	CCNGG	1 cut(s)	323
BmrFI	CCNGG	1 cut(s)	323
BpmI	CTGGAG	1 cut(s)	185
Bpu1102I	GCTNAGC	1 cut(s)	105
BsaBI	GATNNNNATC	1 cut(s)	281
BsaJI	CCNNGG	1 cut(s)	37
Bsc4I	CCNNNNNNNGG	1 cut(s)	97
Bse8I	GATNNNNATC	1 cut(s)	281
BseBI	CCWGG	1 cut(s)	323
BseDI	CCNNGG	1 cut(s)	37
BseJI	GATNNNNATC	1 cut(s)	281
BseLI	CCNNNNNNNGG	1 cut(s)	97
BseMII	CTCAG	1 cut(s)	123
BseXI	GCAGC	1 cut(s)	113
BsgI	GTGCAG	1 cut(s)	46
BshFI	GGCC	1 cut(s)	345
BslI	CCNNNNNNNGG	1 cut(s)	97
BsnI	GGCC	1 cut(s)	345
Bsp143I	GATC	2 cut(s)	276, 358
Bsp1720I	GCTNAGC	1 cut(s)	105
BspACI	CCGC	3 cut(s)	50, 91, 239
BspANI	GGCC	1 cut(s)	345
BspCNI	CTCAG	1 cut(s)	124
BspMI	ACCTGC	1 cut(s)	199
BssECI	CCNNGG	1 cut(s)	37
BssMI	GATC	2 cut(s)	276, 358
BssT1I	CCWWGG	1 cut(s)	37
Bst2UI	CCWGG	1 cut(s)	323
Bst4CI	ACNGT	1 cut(s)	24
Bst6I	CTCTTC	1 cut(s)	136
BstAPI	GCANNNNNTGC	1 cut(s)	33
BstC8I	GCNNGC	1 cut(s)	29
BstDEI	CTNAG	2 cut(s)	105, 132
BstKTI	GATC	2 cut(s)	279, 361
BstMBI	GATC	2 cut(s)	276, 358
BstMWI	GCNNNNNNNGC	1 cut(s)	33
BstNI	CCWGG	1 cut(s)	323
BstNSI	RCATGY	1 cut(s)	87
BstSCI	CCNGG	1 cut(s)	321
BstV1I	GCAGC	1 cut(s)	113
BstX2I	RGATCY	1 cut(s)	276
BstYI	RGATCY	1 cut(s)	276
BsuRI	GGCC	1 cut(s)	345
BtsIMutI	CAGTG	1 cut(s)	346
BveI	ACCTGC	1 cut(s)	199
Cac8I	GCNNGC	1 cut(s)	29
Csp6I	GTAC	1 cut(s)	20
CviAII	CATG	5 cut(s)	45, 56, 84, 260, 268
CviJI	RGCY	7 cut(s)	31, 104, 119, 131, 321, 326, 345
CviKI_1	RGCY	7 cut(s)	31, 104, 119, 131, 321, 326, 345
CviQI	GTAC	1 cut(s)	20
DdeI	CTNAG	2 cut(s)	105, 132
DpnI	GATC	2 cut(s)	278, 360
DpnII	GATC	2 cut(s)	276, 358
Eam1104I	CTCTTC	1 cut(s)	136
EarI	CTCTTC	1 cut(s)	136
EciI	GGCGGA	1 cut(s)	65
Eco130I	CCWWGG	1 cut(s)	37
EcoRI	GAATTC	1 cut(s)	263
EcoRII	CCWGG	1 cut(s)	321
EcoT14I	CCWWGG	1 cut(s)	37
EcoT22I	ATGCAT	1 cut(s)	85
ErhI	CCWWGG	1 cut(s)	37
FaeI	CATG	5 cut(s)	48, 59, 87, 263, 271
FatI	CATG	5 cut(s)	44, 55, 83, 259, 267
FbaI	TGATCA	1 cut(s)	358
Fnu4HI	GCNGC	1 cut(s)	102
Fsp4HI	GCNGC	1 cut(s)	102
GluI	GCNGC	1 cut(s)	102
GsuI	CTGGAG	1 cut(s)	185
HaeIII	GGCC	1 cut(s)	345
Hin1II	CATG	5 cut(s)	48, 59, 87, 263, 271
HphI	GGTGA	1 cut(s)	71
Hpy188I	TCNGA	1 cut(s)	363
Hpy188III	TCNNGA	2 cut(s)	164, 381
HpyCH4III	ACNGT	1 cut(s)	24
HpyCH4IV	ACGT	1 cut(s)	190
HpyCH4V	TGCA	3 cut(s)	27, 83, 271
HpyF10VI	GCNNNNNNNGC	1 cut(s)	33
HpyF3I	CTNAG	2 cut(s)	105, 132
HpySE526I	ACGT	1 cut(s)	190
Hsp92II	CATG	5 cut(s)	48, 59, 87, 263, 271
Ksp22I	TGATCA	1 cut(s)	358
Kzo9I	GATC	2 cut(s)	276, 358
LmnI	GCTCC	2 cut(s)	52, 116
LpnPI	CCDG	5 cut(s)	13, 149, 194, 308, 335
Lsp1109I	GCAGC	1 cut(s)	113
MaeII	ACGT	1 cut(s)	190
MaeIII	GTNAC	1 cut(s)	86
MalI	GATC	2 cut(s)	278, 360
MboI	GATC	2 cut(s)	276, 358
MboII	GAAGA	4 cut(s)	150, 153, 271, 378
MflI	RGATCY	1 cut(s)	276
MluCI	AATT	7 cut(s)	11, 157, 219, 234, 263, 291, 302
MnlI	CCTC	2 cut(s)	91, 106
Mph1103I	ATGCAT	1 cut(s)	85
MseI	TTAA	1 cut(s)	297
MslI	CAYNNNNRTG	1 cut(s)	183
MspA1I	CMGCKG	1 cut(s)	241
MspR9I	CCNGG	1 cut(s)	323
MvaI	CCWGG	1 cut(s)	323
MwoI	GCNNNNNNNGC	1 cut(s)	33
NdeII	GATC	2 cut(s)	276, 358
NlaIII	CATG	5 cut(s)	48, 59, 87, 263, 271
NsiI	ATGCAT	1 cut(s)	85
NspI	RCATGY	1 cut(s)	87
PkrI	GCNGC	1 cut(s)	103
Psp1406I	AACGTT	1 cut(s)	190
Psp6I	CCWGG	1 cut(s)	321
PspGI	CCWGG	1 cut(s)	321
PsuI	RGATCY	1 cut(s)	276
RsaI	GTAC	1 cut(s)	21
RsaNI	GTAC	1 cut(s)	20
RseI	CAYNNNNRTG	1 cut(s)	183
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	1 cut(s)	102
Sau3AI	GATC	2 cut(s)	276, 358
ScrFI	CCNGG	1 cut(s)	323
SetI	ASST	5 cut(s)	106, 121, 133, 193, 213
SmiMI	CAYNNNNRTG	1 cut(s)	183
Sse9I	AATT	7 cut(s)	11, 157, 219, 234, 263, 291, 302
SsiI	CCGC	3 cut(s)	50, 91, 239
StyD4I	CCNGG	1 cut(s)	321
StyI	CCWWGG	1 cut(s)	37
TaaI	ACNGT	1 cut(s)	24
TaiI	ACGT	1 cut(s)	193
TasI	AATT	7 cut(s)	11, 157, 219, 234, 263, 291, 302
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TscAI	CASTG	1 cut(s)	346
TseI	GCWGC	1 cut(s)	101
TspDTI	ATGAA	7 cut(s)	24, 33, 141, 201, 256, 271, 276
TspRI	CASTG	1 cut(s)	346
XapI	RAATTY	4 cut(s)	157, 234, 263, 302
XceI	RCATGY	1 cut(s)	87
Zsp2I	ATGCAT	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.