E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom04g03300 pycom04g03380 |
| rosa_chinensis | RchiOBHm_Chr2g0127701 RchiOBHm_Chr2g0166791 RchiOBHm_Chr6g0267371 |
| rosa_samantha | Rh2AG323700 Rh2AG398600 Rh2AG592500 Rh2BG332900 Rh2BG604000 Rh2CG385400 Rh2CG574900 |
| rosa_wichuraiana | Rw2G026270 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 1 cut(s) | 165 |
| AcsI | RAATTY | 1 cut(s) | 29 |
| AfaI | GTAC | 1 cut(s) | 188 |
| AjnI | CCWGG | 1 cut(s) | 366 |
| AluBI | AGCT | 3 cut(s) | 229, 289, 307 |
| AluI | AGCT | 3 cut(s) | 229, 289, 307 |
| Alw21I | GWGCWC | 1 cut(s) | 317 |
| Alw26I | GTCTC | 1 cut(s) | 107 |
| AoxI | GGCC | 1 cut(s) | 165 |
| ApeKI | GCWGC | 3 cut(s) | 226, 229, 256 |
| ApoI | RAATTY | 1 cut(s) | 29 |
| AsuHPI | GGTGA | 1 cut(s) | 86 |
| BalI | TGGCCA | 1 cut(s) | 167 |
| Bbv12I | GWGCWC | 1 cut(s) | 317 |
| BbvI | GCAGC | 3 cut(s) | 216, 238, 268 |
| BccI | CCATC | 2 cut(s) | 157, 201 |
| BciT130I | CCWGG | 1 cut(s) | 368 |
| BcoDI | GTCTC | 1 cut(s) | 107 |
| BfaI | CTAG | 1 cut(s) | 179 |
| BisI | GCNGC | 3 cut(s) | 227, 230, 257 |
| BlsI | GCNGC | 3 cut(s) | 228, 231, 258 |
| Bme1390I | CCNGG | 1 cut(s) | 368 |
| BmrFI | CCNGG | 1 cut(s) | 368 |
| BpmI | CTGGAG | 2 cut(s) | 344, 350 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 119, 149, 348, 378 |
| Bse3DI | GCAATG | 1 cut(s) | 266 |
| BseBI | CCWGG | 1 cut(s) | 368 |
| BseGI | GGATG | 1 cut(s) | 332 |
| BseMI | GCAATG | 1 cut(s) | 266 |
| BseMII | CTCAG | 1 cut(s) | 284 |
| BseXI | GCAGC | 3 cut(s) | 216, 238, 268 |
| BseYI | CCCAGC | 1 cut(s) | 285 |
| BshFI | GGCC | 1 cut(s) | 167 |
| BsiHKAI | GWGCWC | 1 cut(s) | 317 |
| BsmAI | GTCTC | 1 cut(s) | 107 |
| BsnI | GGCC | 1 cut(s) | 167 |
| Bsp1286I | GDGCHC | 1 cut(s) | 317 |
| BspANI | GGCC | 1 cut(s) | 167 |
| BspCNI | CTCAG | 1 cut(s) | 283 |
| BsrDI | GCAATG | 1 cut(s) | 266 |
| Bst2UI | CCWGG | 1 cut(s) | 368 |
| Bst4CI | ACNGT | 1 cut(s) | 319 |
| Bst6I | CTCTTC | 1 cut(s) | 151 |
| BstC8I | GCNNGC | 1 cut(s) | 44 |
| BstDEI | CTNAG | 1 cut(s) | 270 |
| BstF5I | GGATG | 1 cut(s) | 332 |
| BstMAI | GTCTC | 1 cut(s) | 107 |
| BstNI | CCWGG | 1 cut(s) | 368 |
| BstNSI | RCATGY | 1 cut(s) | 236 |
| BstSCI | CCNGG | 1 cut(s) | 366 |
| BstV1I | GCAGC | 3 cut(s) | 216, 238, 268 |
| BsuRI | GGCC | 1 cut(s) | 167 |
| BtsCI | GGATG | 1 cut(s) | 332 |
| Cac8I | GCNNGC | 1 cut(s) | 44 |
| Csp6I | GTAC | 1 cut(s) | 187 |
| CviAII | CATG | 3 cut(s) | 60, 71, 233 |
| CviJI | RGCY | 9 cut(s) | 46, 90, 167, 229, 269, 289, 307, 348, 371 |
| CviKI_1 | RGCY | 9 cut(s) | 46, 90, 167, 229, 269, 289, 307, 348, 371 |
| CviQI | GTAC | 1 cut(s) | 187 |
| DdeI | CTNAG | 1 cut(s) | 270 |
| EaeI | YGGCCR | 1 cut(s) | 165 |
| Eam1104I | CTCTTC | 1 cut(s) | 151 |
| EarI | CTCTTC | 1 cut(s) | 151 |
| EcoRII | CCWGG | 1 cut(s) | 366 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| FaeI | CATG | 3 cut(s) | 63, 74, 236 |
| FaiI | YATR | 9 cut(s) | 6, 61, 72, 96, 111, 138, 234, 303, 345 |
| FatI | CATG | 3 cut(s) | 59, 70, 232 |
| Fnu4HI | GCNGC | 3 cut(s) | 227, 230, 257 |
| FokI | GGATG | 1 cut(s) | 319 |
| Fsp4HI | GCNGC | 3 cut(s) | 227, 230, 257 |
| FspBI | CTAG | 1 cut(s) | 179 |
| GluI | GCNGC | 3 cut(s) | 227, 230, 257 |
| GsaI | CCCAGC | 1 cut(s) | 289 |
| GsuI | CTGGAG | 2 cut(s) | 344, 350 |
| HaeIII | GGCC | 1 cut(s) | 167 |
| Hin1II | CATG | 3 cut(s) | 63, 74, 236 |
| HindIII | AAGCTT | 1 cut(s) | 305 |
| HinfI | GANTC | 1 cut(s) | 329 |
| HphI | GGTGA | 1 cut(s) | 86 |
| Hpy166II | GTNNAC | 1 cut(s) | 189 |
| Hpy188I | TCNGA | 1 cut(s) | 67 |
| Hpy188III | TCNNGA | 1 cut(s) | 179 |
| Hpy8I | GTNNAC | 1 cut(s) | 189 |
| HpyCH4III | ACNGT | 1 cut(s) | 319 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 15, 59, 232, 294 |
| HpyF3I | CTNAG | 1 cut(s) | 270 |
| Hsp92II | CATG | 3 cut(s) | 63, 74, 236 |
| LmnI | GCTCC | 1 cut(s) | 312 |
| LpnPI | CCDG | 7 cut(s) | 28, 69, 110, 112, 299, 308, 353 |
| Lsp1109I | GCAGC | 3 cut(s) | 216, 238, 268 |
| MaeI | CTAG | 1 cut(s) | 179 |
| MaeIII | GTNAC | 2 cut(s) | 101, 235 |
| MboII | GAAGA | 1 cut(s) | 168 |
| MhlI | GDGCHC | 1 cut(s) | 317 |
| MlsI | TGGCCA | 1 cut(s) | 167 |
| MluCI | AATT | 2 cut(s) | 29, 295 |
| MluNI | TGGCCA | 1 cut(s) | 167 |
| MnlI | CCTC | 4 cut(s) | 121, 136, 177, 319 |
| Mox20I | TGGCCA | 1 cut(s) | 167 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MscI | TGGCCA | 1 cut(s) | 167 |
| Msp20I | TGGCCA | 1 cut(s) | 167 |
| MspA1I | CMGCKG | 2 cut(s) | 229, 289 |
| MspR9I | CCNGG | 1 cut(s) | 368 |
| MvaI | CCWGG | 1 cut(s) | 368 |
| NlaIII | CATG | 3 cut(s) | 63, 74, 236 |
| NmuCI | GTSAC | 1 cut(s) | 235 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| NspI | RCATGY | 1 cut(s) | 236 |
| PfeI | GAWTC | 1 cut(s) | 329 |
| PkrI | GCNGC | 3 cut(s) | 228, 231, 258 |
| Psp6I | CCWGG | 1 cut(s) | 366 |
| PspFI | CCCAGC | 1 cut(s) | 285 |
| PspGI | CCWGG | 1 cut(s) | 366 |
| PvuII | CAGCTG | 2 cut(s) | 229, 289 |
| RsaI | GTAC | 1 cut(s) | 188 |
| RsaNI | GTAC | 1 cut(s) | 187 |
| SatI | GCNGC | 3 cut(s) | 227, 230, 257 |
| ScrFI | CCNGG | 1 cut(s) | 368 |
| SduI | GDGCHC | 1 cut(s) | 317 |
| SetI | ASST | 6 cut(s) | 25, 88, 188, 231, 291, 309 |
| Sse9I | AATT | 2 cut(s) | 29, 295 |
| SspMI | CTAG | 1 cut(s) | 179 |
| StyD4I | CCNGG | 1 cut(s) | 366 |
| TaaI | ACNGT | 1 cut(s) | 319 |
| TasI | AATT | 2 cut(s) | 29, 295 |
| TfiI | GAWTC | 1 cut(s) | 329 |
| TseFI | GTSAC | 1 cut(s) | 235 |
| TseI | GCWGC | 3 cut(s) | 226, 229, 256 |
| Tsp45I | GTSAC | 1 cut(s) | 235 |
| TspDTI | ATGAA | 1 cut(s) | 321 |
| XapI | RAATTY | 1 cut(s) | 29 |
| XbaI | TCTAGA | 1 cut(s) | 178 |
| XceI | RCATGY | 1 cut(s) | 236 |
| XspI | CTAG | 1 cut(s) | 179 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |