Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0017402

Physical Location & Seq

Genomic Coordinates Reverse (-)

82580752 .. 82582559

Gene Structure 1808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG604000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGCATATCACTTGCACACCACCTTGTAAATTTGAGTTTTGCTGGCTCTGTCTTGGTGCATGGTCAGAACATGGTGAGAGGACAGGTGGCTTTTATGCCTGTAACCGCTATGAGACAGCAAAGCAGGAGGGAGTGTACGATGAGGCAGAGAAACGAAGAGAGATGGCCAAGAACTCTCTAGAGAGGTACACCCATTATTACGAAAGATGGGTAACCAATCAGTCGTCCAGACAAAAAGCACTAGCAGACTTGCAGCAGATGACTGTGCATCTTGAGAAGCTGAGCGACATCGTGATCTGGGTTGTTCTGGCTTCTGGGTTTTGGCCTGCAGTTTTGAATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

114

Amino Acids

13.37

Weight (kDa)

6.41

Isoelectric Point (pI)

68.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBR_1	PF22191	1 - 22	6.2e-06	IBR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0017402)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g03300 pycom04g03380
rosa_chinensis	RchiOBHm_Chr2g0127701 RchiOBHm_Chr2g0166791 RchiOBHm_Chr6g0267371
rosa_samantha	Rh2AG323700 Rh2AG398600 Rh2AG592500 Rh2BG332900 Rh2BG604000 Rh2CG385400 Rh2CG574900
rosa_wichuraiana	Rw2G026270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	106
AcoI	YGGCCR	1 cut(s)	165
AcsI	RAATTY	1 cut(s)	29
AfaI	GTAC	2 cut(s)	137, 188
AgsI	TTSAA	1 cut(s)	337
AluBI	AGCT	1 cut(s)	280
AluI	AGCT	1 cut(s)	280
Alw26I	GTCTC	1 cut(s)	107
AoxI	GGCC	2 cut(s)	165, 323
ApeKI	GCWGC	1 cut(s)	253
ApoI	RAATTY	1 cut(s)	29
AsuHPI	GGTGA	1 cut(s)	86
BalI	TGGCCA	1 cut(s)	167
BbvI	GCAGC	1 cut(s)	265
BccI	CCATC	2 cut(s)	157, 201
BcoDI	GTCTC	1 cut(s)	107
BfaI	CTAG	2 cut(s)	179, 242
BfmI	CTRYAG	1 cut(s)	327
BisI	GCNGC	1 cut(s)	254
BlpI	GCTNAGC	1 cut(s)	281
BlsI	GCNGC	1 cut(s)	255
BmsI	GCATC	1 cut(s)	277
Bpu1102I	GCTNAGC	1 cut(s)	281
BpuEI	CTTGAG	1 cut(s)	293
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
BseMII	CTCAG	1 cut(s)	272
BseXI	GCAGC	1 cut(s)	265
BshFI	GGCC	2 cut(s)	167, 325
BsmAI	GTCTC	1 cut(s)	107
BsnI	GGCC	2 cut(s)	167, 325
Bsp143I	GATC	1 cut(s)	294
Bsp1720I	GCTNAGC	1 cut(s)	281
BspACI	CCGC	1 cut(s)	106
BspANI	GGCC	2 cut(s)	167, 325
BspCNI	CTCAG	1 cut(s)	273
BspMAI	CTGCAG	1 cut(s)	331
BssMI	GATC	1 cut(s)	294
Bst4CI	ACNGT	1 cut(s)	265
Bst6I	CTCTTC	1 cut(s)	151
BstC8I	GCNNGC	2 cut(s)	44, 327
BstDEI	CTNAG	1 cut(s)	281
BstEII	GGTNACC	1 cut(s)	211
BstKTI	GATC	1 cut(s)	297
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	1 cut(s)	294
BstPI	GGTNACC	1 cut(s)	211
BstSFI	CTRYAG	1 cut(s)	327
BstV1I	GCAGC	1 cut(s)	265
BsuRI	GGCC	2 cut(s)	167, 325
Cac8I	GCNNGC	2 cut(s)	44, 327
Csp6I	GTAC	2 cut(s)	136, 187
CviAII	CATG	2 cut(s)	60, 71
CviJI	RGCY	6 cut(s)	46, 90, 167, 280, 311, 325
CviKI_1	RGCY	6 cut(s)	46, 90, 167, 280, 311, 325
CviQI	GTAC	2 cut(s)	136, 187
DdeI	CTNAG	1 cut(s)	281
DpnI	GATC	1 cut(s)	296
DpnII	GATC	1 cut(s)	294
EaeI	YGGCCR	1 cut(s)	165
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
Eco91I	GGTNACC	1 cut(s)	211
EcoO65I	GGTNACC	1 cut(s)	211
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	2 cut(s)	63, 74
FaiI	YATR	7 cut(s)	6, 61, 72, 96, 111, 341, 343
FatI	CATG	2 cut(s)	59, 70
Fnu4HI	GCNGC	1 cut(s)	254
Fsp4HI	GCNGC	1 cut(s)	254
FspBI	CTAG	2 cut(s)	179, 242
GluI	GCNGC	1 cut(s)	254
HaeIII	GGCC	2 cut(s)	167, 325
Hin1II	CATG	2 cut(s)	63, 74
HphI	GGTGA	1 cut(s)	86
Hpy166II	GTNNAC	2 cut(s)	136, 189
Hpy188I	TCNGA	1 cut(s)	67
Hpy188III	TCNNGA	4 cut(s)	179, 228, 272, 292
Hpy8I	GTNNAC	2 cut(s)	136, 189
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4V	TGCA	6 cut(s)	4, 15, 59, 253, 268, 329
HpyF3I	CTNAG	1 cut(s)	281
Hsp92II	CATG	2 cut(s)	63, 74
Kzo9I	GATC	1 cut(s)	294
LpnPI	CCDG	9 cut(s)	28, 69, 110, 112, 241, 283, 293, 300, 339
Lsp1109I	GCAGC	1 cut(s)	265
LweI	GCATC	1 cut(s)	277
MaeI	CTAG	2 cut(s)	179, 242
MaeIII	GTNAC	2 cut(s)	101, 211
MalI	GATC	1 cut(s)	296
MboI	GATC	1 cut(s)	294
MboII	GAAGA	1 cut(s)	168
MlsI	TGGCCA	1 cut(s)	167
MluCI	AATT	1 cut(s)	29
MluNI	TGGCCA	1 cut(s)	167
MnlI	CCTC	4 cut(s)	72, 121, 136, 177
Mox20I	TGGCCA	1 cut(s)	167
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	167
Msp20I	TGGCCA	1 cut(s)	167
NdeII	GATC	1 cut(s)	294
NlaIII	CATG	2 cut(s)	63, 74
NsiI	ATGCAT	1 cut(s)	6
PkrI	GCNGC	1 cut(s)	255
PspEI	GGTNACC	1 cut(s)	211
PstI	CTGCAG	1 cut(s)	331
RsaI	GTAC	2 cut(s)	137, 188
RsaNI	GTAC	2 cut(s)	136, 187
SatI	GCNGC	1 cut(s)	254
Sau3AI	GATC	1 cut(s)	294
SetI	ASST	4 cut(s)	25, 88, 188, 282
SfaNI	GCATC	1 cut(s)	277
SfcI	CTRYAG	1 cut(s)	327
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
Sse9I	AATT	1 cut(s)	29
SsiI	CCGC	1 cut(s)	106
SspMI	CTAG	2 cut(s)	179, 242
TaaI	ACNGT	1 cut(s)	265
TasI	AATT	1 cut(s)	29
TseI	GCWGC	1 cut(s)	253
XapI	RAATTY	1 cut(s)	29
XbaI	TCTAGA	1 cut(s)	178
XspI	CTAG	2 cut(s)	179, 242
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.