Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0017402

Physical Location & Seq

Genomic Coordinates Reverse (-)

59478360 .. 59483246

Gene Structure 4887 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG398600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGAATTGGATATTGGCTAATTCCAAGCCCTGCCCCAATTTTGCTGGCTCTGTCTTGGTGCATGGTCAGAATGGTGGAAGGACAGGTGGCTTTTATGCCTGTAACCGCTATGAGACAGCGAAGCAGGAGGGAGTGTATGATGAGGCAGAGAAACGAAGAGAGATGGCCAAGAACTCTCTAGAGAGGTACACCCATTATTACGAAAGATGGGCAACTAATCAGTCGCAGCTGCATGTGACAAAATCAAATGATGAGCAGCAATGTAAGGCTCAGTTTGTGAAATCCCAGCTGTGCAATTTCCGTAAGCTTTGGAGCACCGTGCCGGAGGATTCATCCCATTTTAAATATTCTTCATATGTTGGATCAAGTGGCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

125

Amino Acids

14.35

Weight (kDa)

8.9

Isoelectric Point (pI)

47.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017402)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g03300 pycom04g03380
rosa_chinensis	RchiOBHm_Chr2g0127701 RchiOBHm_Chr2g0166791 RchiOBHm_Chr6g0267371
rosa_samantha	Rh2AG323700 Rh2AG398600 Rh2AG592500 Rh2BG332900 Rh2BG604000 Rh2CG385400 Rh2CG574900
rosa_wichuraiana	Rw2G026270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	106
AclWI	GGATC	1 cut(s)	370
AcoI	YGGCCR	1 cut(s)	165
AfaI	GTAC	1 cut(s)	188
AjuI	GAANNNNNNNTTGG	1 cut(s)	28
AluBI	AGCT	3 cut(s)	229, 289, 307
AluI	AGCT	3 cut(s)	229, 289, 307
Alw21I	GWGCWC	1 cut(s)	317
Alw26I	GTCTC	1 cut(s)	107
AlwI	GGATC	1 cut(s)	370
AoxI	GGCC	1 cut(s)	165
ApeKI	GCWGC	3 cut(s)	226, 229, 256
BalI	TGGCCA	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	317
BbvI	GCAGC	3 cut(s)	216, 238, 268
BccI	CCATC	2 cut(s)	157, 201
BcoDI	GTCTC	1 cut(s)	107
BfaI	CTAG	1 cut(s)	179
BisI	GCNGC	3 cut(s)	227, 230, 257
BlsI	GCNGC	3 cut(s)	228, 231, 258
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bse3DI	GCAATG	1 cut(s)	266
BseGI	GGATG	1 cut(s)	332
BseMI	GCAATG	1 cut(s)	266
BseMII	CTCAG	1 cut(s)	284
BseXI	GCAGC	3 cut(s)	216, 238, 268
BseYI	CCCAGC	1 cut(s)	285
BshFI	GGCC	1 cut(s)	167
BsiHKAI	GWGCWC	1 cut(s)	317
BsiSI	CCGG	1 cut(s)	323
BsmAI	GTCTC	1 cut(s)	107
BsnI	GGCC	1 cut(s)	167
Bsp1286I	GDGCHC	1 cut(s)	317
Bsp143I	GATC	1 cut(s)	362
BspACI	CCGC	1 cut(s)	106
BspANI	GGCC	1 cut(s)	167
BspCNI	CTCAG	1 cut(s)	283
BspPI	GGATC	1 cut(s)	370
BsrDI	GCAATG	1 cut(s)	266
BssMI	GATC	1 cut(s)	362
Bst4CI	ACNGT	1 cut(s)	319
Bst6I	CTCTTC	1 cut(s)	151
BstC8I	GCNNGC	1 cut(s)	46
BstDEI	CTNAG	1 cut(s)	270
BstF5I	GGATG	1 cut(s)	332
BstKTI	GATC	1 cut(s)	365
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	1 cut(s)	362
BstNSI	RCATGY	1 cut(s)	236
BstV1I	GCAGC	3 cut(s)	216, 238, 268
BsuRI	GGCC	1 cut(s)	167
BtsCI	GGATG	1 cut(s)	332
Cac8I	GCNNGC	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	3 cut(s)	62, 233, 375
CviJI	RGCY	9 cut(s)	17, 28, 48, 90, 167, 229, 269, 289, 307
CviKI_1	RGCY	9 cut(s)	17, 28, 48, 90, 167, 229, 269, 289, 307
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	1 cut(s)	270
DpnI	GATC	1 cut(s)	364
DpnII	GATC	1 cut(s)	362
DraI	TTTAAA	1 cut(s)	343
EaeI	YGGCCR	1 cut(s)	165
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
FaeI	CATG	3 cut(s)	65, 236, 378
FaiI	YATR	8 cut(s)	63, 96, 111, 138, 234, 355, 357, 376
FatI	CATG	3 cut(s)	61, 232, 374
FauNDI	CATATG	1 cut(s)	355
Fnu4HI	GCNGC	3 cut(s)	227, 230, 257
FokI	GGATG	1 cut(s)	319
Fsp4HI	GCNGC	3 cut(s)	227, 230, 257
FspBI	CTAG	1 cut(s)	179
GluI	GCNGC	3 cut(s)	227, 230, 257
GsaI	CCCAGC	1 cut(s)	289
HaeIII	GGCC	1 cut(s)	167
HapII	CCGG	1 cut(s)	323
Hin1II	CATG	3 cut(s)	65, 236, 378
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	1 cut(s)	329
HpaII	CCGG	1 cut(s)	323
Hpy166II	GTNNAC	1 cut(s)	189
Hpy188I	TCNGA	1 cut(s)	69
Hpy188III	TCNNGA	1 cut(s)	179
Hpy8I	GTNNAC	1 cut(s)	189
HpyAV	CCTTC	1 cut(s)	72
HpyCH4III	ACNGT	1 cut(s)	319
HpyCH4V	TGCA	3 cut(s)	61, 232, 294
HpyF3I	CTNAG	1 cut(s)	270
Hsp92II	CATG	3 cut(s)	65, 236, 378
Kzo9I	GATC	1 cut(s)	362
LmnI	GCTCC	1 cut(s)	312
LpnPI	CCDG	7 cut(s)	30, 43, 69, 110, 112, 299, 336
Lsp1109I	GCAGC	3 cut(s)	216, 238, 268
MaeI	CTAG	1 cut(s)	179
MaeIII	GTNAC	2 cut(s)	101, 235
MalI	GATC	1 cut(s)	364
MboI	GATC	1 cut(s)	362
MboII	GAAGA	2 cut(s)	168, 342
MhlI	GDGCHC	1 cut(s)	317
MlsI	TGGCCA	1 cut(s)	167
MluCI	AATT	4 cut(s)	4, 19, 37, 295
MluNI	TGGCCA	1 cut(s)	167
MmeI	TCCRAC	1 cut(s)	340
MnlI	CCTC	4 cut(s)	121, 136, 177, 319
Mox20I	TGGCCA	1 cut(s)	167
MscI	TGGCCA	1 cut(s)	167
MseI	TTAA	1 cut(s)	342
Msp20I	TGGCCA	1 cut(s)	167
MspA1I	CMGCKG	2 cut(s)	229, 289
MspI	CCGG	1 cut(s)	323
NdeI	CATATG	1 cut(s)	355
NdeII	GATC	1 cut(s)	362
NlaIII	CATG	3 cut(s)	65, 236, 378
NmuCI	GTSAC	1 cut(s)	235
NspI	RCATGY	1 cut(s)	236
PfeI	GAWTC	1 cut(s)	329
PkrI	GCNGC	3 cut(s)	228, 231, 258
PspFI	CCCAGC	1 cut(s)	285
PvuII	CAGCTG	2 cut(s)	229, 289
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	3 cut(s)	227, 230, 257
Sau3AI	GATC	1 cut(s)	362
SduI	GDGCHC	1 cut(s)	317
SetI	ASST	5 cut(s)	88, 188, 231, 291, 309
Sse9I	AATT	4 cut(s)	4, 19, 37, 295
SsiI	CCGC	1 cut(s)	106
SspI	AATATT	1 cut(s)	347
SspMI	CTAG	1 cut(s)	179
TaaI	ACNGT	1 cut(s)	319
TasI	AATT	4 cut(s)	4, 19, 37, 295
TfiI	GAWTC	1 cut(s)	329
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	3 cut(s)	226, 229, 256
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	3 cut(s)	17, 321, 342
TspGWI	ACGGA	1 cut(s)	290
XbaI	TCTAGA	1 cut(s)	178
XceI	RCATGY	1 cut(s)	236
XspI	CTAG	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.