E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom04g03300 pycom04g03380 |
| rosa_chinensis | RchiOBHm_Chr2g0127701 RchiOBHm_Chr2g0166791 RchiOBHm_Chr6g0267371 |
| rosa_samantha | Rh2AG323700 Rh2AG398600 Rh2AG592500 Rh2BG332900 Rh2BG604000 Rh2CG385400 Rh2CG574900 |
| rosa_wichuraiana | Rw2G026270 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 224 |
| AcoI | YGGCCR | 1 cut(s) | 165 |
| AcsI | RAATTY | 1 cut(s) | 29 |
| AfaI | GTAC | 1 cut(s) | 188 |
| AluBI | AGCT | 1 cut(s) | 286 |
| AluI | AGCT | 1 cut(s) | 286 |
| Alw26I | GTCTC | 1 cut(s) | 107 |
| AoxI | GGCC | 1 cut(s) | 165 |
| ApoI | RAATTY | 1 cut(s) | 29 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 248 |
| AsuHPI | GGTGA | 1 cut(s) | 86 |
| BalI | TGGCCA | 1 cut(s) | 167 |
| BccI | CCATC | 2 cut(s) | 157, 201 |
| BcoDI | GTCTC | 1 cut(s) | 107 |
| BfaI | CTAG | 2 cut(s) | 179, 326 |
| BlpI | GCTNAGC | 1 cut(s) | 282 |
| BpmI | CTGGAG | 1 cut(s) | 285 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 282 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 119, 149 |
| Bse3DI | GCAATG | 1 cut(s) | 245 |
| BseMI | GCAATG | 1 cut(s) | 245 |
| BseMII | CTCAG | 1 cut(s) | 273 |
| BshFI | GGCC | 1 cut(s) | 167 |
| BsmAI | GTCTC | 1 cut(s) | 107 |
| BsnI | GGCC | 1 cut(s) | 167 |
| Bsp143I | GATC | 1 cut(s) | 304 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 282 |
| BspANI | GGCC | 1 cut(s) | 167 |
| BspCNI | CTCAG | 1 cut(s) | 274 |
| BsrDI | GCAATG | 1 cut(s) | 245 |
| BssMI | GATC | 1 cut(s) | 304 |
| Bst6I | CTCTTC | 1 cut(s) | 151 |
| BstC8I | GCNNGC | 1 cut(s) | 44 |
| BstDEI | CTNAG | 1 cut(s) | 282 |
| BstKTI | GATC | 1 cut(s) | 307 |
| BstMAI | GTCTC | 1 cut(s) | 107 |
| BstMBI | GATC | 1 cut(s) | 304 |
| BsuRI | GGCC | 1 cut(s) | 167 |
| Cac8I | GCNNGC | 1 cut(s) | 44 |
| Csp6I | GTAC | 1 cut(s) | 187 |
| CviAII | CATG | 2 cut(s) | 60, 71 |
| CviJI | RGCY | 5 cut(s) | 46, 90, 167, 286, 310 |
| CviKI_1 | RGCY | 5 cut(s) | 46, 90, 167, 286, 310 |
| CviQI | GTAC | 1 cut(s) | 187 |
| DdeI | CTNAG | 1 cut(s) | 282 |
| DpnI | GATC | 1 cut(s) | 306 |
| DpnII | GATC | 1 cut(s) | 304 |
| EaeI | YGGCCR | 1 cut(s) | 165 |
| Eam1104I | CTCTTC | 1 cut(s) | 151 |
| EarI | CTCTTC | 1 cut(s) | 151 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| FaeI | CATG | 2 cut(s) | 63, 74 |
| FaiI | YATR | 9 cut(s) | 6, 61, 72, 96, 111, 138, 236, 255, 323 |
| FatI | CATG | 2 cut(s) | 59, 70 |
| FblI | GTMKAC | 1 cut(s) | 224 |
| FspBI | CTAG | 2 cut(s) | 179, 326 |
| GsuI | CTGGAG | 1 cut(s) | 285 |
| HaeIII | GGCC | 1 cut(s) | 167 |
| Hin1II | CATG | 2 cut(s) | 63, 74 |
| HincII | GTYRAC | 1 cut(s) | 225 |
| HindII | GTYRAC | 1 cut(s) | 225 |
| HinfI | GANTC | 1 cut(s) | 329 |
| HphI | GGTGA | 1 cut(s) | 86 |
| Hpy166II | GTNNAC | 2 cut(s) | 189, 225 |
| Hpy188I | TCNGA | 1 cut(s) | 67 |
| Hpy188III | TCNNGA | 1 cut(s) | 179 |
| Hpy8I | GTNNAC | 2 cut(s) | 189, 225 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 15, 59, 238 |
| HpyF3I | CTNAG | 1 cut(s) | 282 |
| Hsp92II | CATG | 2 cut(s) | 63, 74 |
| Kzo9I | GATC | 1 cut(s) | 304 |
| LpnPI | CCDG | 6 cut(s) | 28, 69, 110, 112, 249, 296 |
| MaeI | CTAG | 2 cut(s) | 179, 326 |
| MaeIII | GTNAC | 1 cut(s) | 101 |
| MalI | GATC | 1 cut(s) | 306 |
| MboI | GATC | 1 cut(s) | 304 |
| MboII | GAAGA | 2 cut(s) | 168, 288 |
| MlsI | TGGCCA | 1 cut(s) | 167 |
| MluCI | AATT | 3 cut(s) | 29, 272, 334 |
| MluNI | TGGCCA | 1 cut(s) | 167 |
| MlyI | GAGTC | 1 cut(s) | 323 |
| MnlI | CCTC | 4 cut(s) | 121, 136, 177, 260 |
| Mox20I | TGGCCA | 1 cut(s) | 167 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MroXI | GAANNNNTTC | 1 cut(s) | 248 |
| MscI | TGGCCA | 1 cut(s) | 167 |
| Msp20I | TGGCCA | 1 cut(s) | 167 |
| NdeII | GATC | 1 cut(s) | 304 |
| NlaIII | CATG | 2 cut(s) | 63, 74 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| PdmI | GAANNNNTTC | 1 cut(s) | 248 |
| PleI | GAGTC | 1 cut(s) | 323 |
| PpsI | GAGTC | 1 cut(s) | 323 |
| RsaI | GTAC | 1 cut(s) | 188 |
| RsaNI | GTAC | 1 cut(s) | 187 |
| SalI | GTCGAC | 1 cut(s) | 223 |
| Sau3AI | GATC | 1 cut(s) | 304 |
| SchI | GAGTC | 1 cut(s) | 323 |
| SetI | ASST | 6 cut(s) | 25, 88, 188, 250, 271, 288 |
| Sse9I | AATT | 3 cut(s) | 29, 272, 334 |
| SspMI | CTAG | 2 cut(s) | 179, 326 |
| TaqI | TCGA | 1 cut(s) | 224 |
| TasI | AATT | 3 cut(s) | 29, 272, 334 |
| TspDTI | ATGAA | 1 cut(s) | 288 |
| XapI | RAATTY | 1 cut(s) | 29 |
| XbaI | TCTAGA | 1 cut(s) | 178 |
| XmiI | GTMKAC | 1 cut(s) | 224 |
| XmnI | GAANNNNTTC | 1 cut(s) | 248 |
| XspI | CTAG | 2 cut(s) | 179, 326 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |