Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0017402

Physical Location & Seq

Genomic Coordinates Forward (+)

40484077 .. 40487969

Gene Structure 3893 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G026270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGCTTCCAACTATTAAACATGGCTCACAACGGATGAAGTGTACTGAAGAAGCTCATCGCCCCGTTGATTGTGGCACAGTGGCCAAATGGATATTGAAGAACAGTGCCGAATCTGAAAATATGAATTGGATATTGGCTAATTCCAAGCCCTGCCCCAAGTGCAAACGACCCATTGAGAAAAACCAAGGCTGTATGCATATCACTTGCACACCACCTTGTAAATTTGAGTTTTGCTGGCTCTGTCTTGGTGCATGGTCAGAACATAGTGAAAGGACAGGTGGCTTTTATGCCTGTAACCGCTATGAGACAGCGAAGCAGGAGGGAGTGAGAGGCCAAGAGAAACGAAGAGAGATGGCCAAGAACTCTCTAGAGAGGTACACCCATTATTACGAAAGATGGTCCAGACAAAAAGCACTAGCAGACTTGCAGCGGATGACTGTGCATCTTGAGAAGCTGAGCGACATCGTGATCTGGGTTGTTCTGGCTTCTGGGTTTTGGTGTTTTTGGTGGGTTGAGGTTGTTATGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR

Protein Analysis

176

Amino Acids

20.67

Weight (kDa)

8.87

Isoelectric Point (pI)

59.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBR	PF01485	41 - 88	5.4e-08	IBR domain, a half RING-finger domain
IBR_1	PF22191	46 - 87	2e-14	IBR domain
IBR_2	PF22605	47 - 86	2.2e-13	IBR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017402)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g03300 pycom04g03380
rosa_chinensis	RchiOBHm_Chr2g0127701 RchiOBHm_Chr2g0166791 RchiOBHm_Chr6g0267371
rosa_samantha	Rh2AG323700 Rh2AG398600 Rh2AG592500 Rh2BG332900 Rh2BG604000 Rh2CG385400 Rh2CG574900
rosa_wichuraiana	Rw2G026270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	298, 430
AcoI	YGGCCR	2 cut(s)	81, 354
AcsI	RAATTY	1 cut(s)	221
AcuI	CTGAAG	1 cut(s)	66
AfaI	GTAC	2 cut(s)	43, 377
AgsI	TTSAA	1 cut(s)	97
AjuI	GAANNNNNNNTTGG	2 cut(s)	116, 148
AluBI	AGCT	2 cut(s)	53, 454
AluI	AGCT	2 cut(s)	53, 454
Alw26I	GTCTC	1 cut(s)	299
AoxI	GGCC	3 cut(s)	81, 331, 354
ApeKI	GCWGC	1 cut(s)	427
ApoI	RAATTY	1 cut(s)	221
AspS9I	GGNCC	1 cut(s)	399
AvaII	GGWCC	1 cut(s)	399
BalI	TGGCCA	2 cut(s)	83, 356
BbvI	GCAGC	1 cut(s)	439
BccI	CCATC	2 cut(s)	346, 390
BcoDI	GTCTC	1 cut(s)	299
BfaI	CTAG	2 cut(s)	368, 416
BisI	GCNGC	1 cut(s)	428
BlpI	GCTNAGC	1 cut(s)	455
BlsI	GCNGC	1 cut(s)	429
Bme18I	GGWCC	1 cut(s)	399
BmgT120I	GGNCC	1 cut(s)	399
BmsI	GCATC	1 cut(s)	451
Bpu1102I	GCTNAGC	1 cut(s)	455
BpuEI	CTTGAG	1 cut(s)	467
BsaJI	CCNNGG	1 cut(s)	184
BseDI	CCNNGG	1 cut(s)	184
BseGI	GGATG	2 cut(s)	39, 438
BseMII	CTCAG	1 cut(s)	446
BseXI	GCAGC	1 cut(s)	439
BshFI	GGCC	3 cut(s)	83, 333, 356
BsmAI	GTCTC	1 cut(s)	299
BsnI	GGCC	3 cut(s)	83, 333, 356
Bsp143I	GATC	1 cut(s)	468
Bsp1720I	GCTNAGC	1 cut(s)	455
BspACI	CCGC	2 cut(s)	298, 430
BspANI	GGCC	3 cut(s)	83, 333, 356
BspCNI	CTCAG	1 cut(s)	447
BssECI	CCNNGG	1 cut(s)	184
BssMI	GATC	1 cut(s)	468
BssT1I	CCWWGG	1 cut(s)	184
Bst4CI	ACNGT	3 cut(s)	79, 104, 439
Bst6I	CTCTTC	1 cut(s)	340
BstC8I	GCNNGC	1 cut(s)	236
BstDEI	CTNAG	1 cut(s)	455
BstF5I	GGATG	2 cut(s)	39, 438
BstKTI	GATC	1 cut(s)	471
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	1 cut(s)	468
BstMWI	GCNNNNNNNGC	1 cut(s)	159
BstV1I	GCAGC	1 cut(s)	439
BsuRI	GGCC	3 cut(s)	83, 333, 356
BtgZI	GCGATG	1 cut(s)	41
BtsCI	GGATG	2 cut(s)	39, 438
BtsIMutI	CAGTG	2 cut(s)	84, 109
Cac8I	GCNNGC	1 cut(s)	236
Cfr13I	GGNCC	1 cut(s)	399
Csp6I	GTAC	2 cut(s)	42, 376
CviAII	CATG	2 cut(s)	20, 252
CviQI	GTAC	2 cut(s)	42, 376
DdeI	CTNAG	1 cut(s)	455
DpnI	GATC	1 cut(s)	470
DpnII	GATC	1 cut(s)	468
EaeI	YGGCCR	2 cut(s)	81, 354
Eam1104I	CTCTTC	1 cut(s)	340
EarI	CTCTTC	1 cut(s)	340
Eco130I	CCWWGG	1 cut(s)	184
Eco47I	GGWCC	1 cut(s)	399
Eco57I	CTGAAG	1 cut(s)	66
EcoT14I	CCWWGG	1 cut(s)	184
EcoT22I	ATGCAT	1 cut(s)	198
ErhI	CCWWGG	1 cut(s)	184
FaeI	CATG	2 cut(s)	23, 255
FaiI	YATR	9 cut(s)	21, 122, 194, 198, 253, 264, 288, 303, 524
FatI	CATG	2 cut(s)	19, 251
Fnu4HI	GCNGC	1 cut(s)	428
FokI	GGATG	2 cut(s)	46, 445
Fsp4HI	GCNGC	1 cut(s)	428
FspBI	CTAG	2 cut(s)	368, 416
GluI	GCNGC	1 cut(s)	428
HaeIII	GGCC	3 cut(s)	83, 333, 356
Hin1II	CATG	2 cut(s)	23, 255
HinfI	GANTC	1 cut(s)	110
Hpy166II	GTNNAC	2 cut(s)	42, 378
Hpy188I	TCNGA	2 cut(s)	115, 259
Hpy188III	TCNNGA	4 cut(s)	368, 402, 446, 466
Hpy8I	GTNNAC	2 cut(s)	42, 378
HpyCH4III	ACNGT	3 cut(s)	79, 104, 439
HpyCH4V	TGCA	6 cut(s)	162, 196, 207, 251, 427, 442
HpyF10VI	GCNNNNNNNGC	1 cut(s)	159
HpyF3I	CTNAG	1 cut(s)	455
Hsp92II	CATG	2 cut(s)	23, 255
Kzo9I	GATC	1 cut(s)	468
LpnPI	CCDG	9 cut(s)	163, 220, 261, 302, 304, 415, 457, 467, 474
Lsp1109I	GCAGC	1 cut(s)	439
LweI	GCATC	1 cut(s)	451
MaeI	CTAG	2 cut(s)	368, 416
MaeIII	GTNAC	1 cut(s)	293
MalI	GATC	1 cut(s)	470
MboI	GATC	1 cut(s)	468
MboII	GAAGA	3 cut(s)	59, 109, 357
MlsI	TGGCCA	2 cut(s)	83, 356
MluCI	AATT	3 cut(s)	124, 139, 221
MluNI	TGGCCA	2 cut(s)	83, 356
MmeI	TCCRAC	1 cut(s)	32
MnlI	CCTC	4 cut(s)	313, 323, 366, 508
Mox20I	TGGCCA	2 cut(s)	83, 356
Mph1103I	ATGCAT	1 cut(s)	198
MscI	TGGCCA	2 cut(s)	83, 356
MseI	TTAA	1 cut(s)	15
Msp20I	TGGCCA	2 cut(s)	83, 356
MspA1I	CMGCKG	1 cut(s)	430
MwoI	GCNNNNNNNGC	1 cut(s)	159
NdeII	GATC	1 cut(s)	468
NlaIII	CATG	2 cut(s)	23, 255
NsiI	ATGCAT	1 cut(s)	198
PfeI	GAWTC	1 cut(s)	110
PkrI	GCNGC	1 cut(s)	429
PspPI	GGNCC	1 cut(s)	399
RsaI	GTAC	2 cut(s)	43, 377
RsaNI	GTAC	2 cut(s)	42, 376
SaqAI	TTAA	1 cut(s)	15
SatI	GCNGC	1 cut(s)	428
Sau3AI	GATC	1 cut(s)	468
Sau96I	GGNCC	1 cut(s)	399
SetI	ASST	6 cut(s)	55, 217, 280, 377, 456, 519
SfaNI	GCATC	1 cut(s)	451
SinI	GGWCC	1 cut(s)	399
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
Sse9I	AATT	3 cut(s)	124, 139, 221
SsiI	CCGC	2 cut(s)	298, 430
SspMI	CTAG	2 cut(s)	368, 416
StyI	CCWWGG	1 cut(s)	184
TaaI	ACNGT	3 cut(s)	79, 104, 439
TasI	AATT	3 cut(s)	124, 139, 221
TatI	WGTACW	1 cut(s)	41
TfiI	GAWTC	1 cut(s)	110
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TscAI	CASTG	2 cut(s)	84, 109
TseI	GCWGC	1 cut(s)	427
TspDTI	ATGAA	2 cut(s)	50, 137
TspGWI	ACGGA	1 cut(s)	46
TspRI	CASTG	2 cut(s)	84, 109
VpaK11BI	GGWCC	1 cut(s)	399
XapI	RAATTY	1 cut(s)	221
XbaI	TCTAGA	1 cut(s)	367
XspI	CTAG	2 cut(s)	368, 416
Zsp2I	ATGCAT	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.