Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0017402

Physical Location & Seq

Genomic Coordinates Reverse (-)

75466346 .. 75475062

Gene Structure 8717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG574900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGCATATCACTTGCACACCACCTTGTAAATTTGAGTTTTGCTGGCTCTGTCTTGGTGCATGGTCAGAACATGGTGAGAGGACAGGTGGCTTTTATGCCTGTAACCGCTATGAGACAGCAAAGCAGGAGGGAGTGTACGATGAGGCAGAGAAACGAAGAGAGATGGCCAAGAACTCTCTAGAGAGGTACACCCATTATTACGAAAGATGGGTAACCAATCAGTCGTCCAGACAAAAAGCACTAGCAGACTTGCAGCAGATGACTGTGCATCTTGAGAAGCTGAGCGACATCGTGATCTGGGTTGTTCTGGCTTCTGGGTTTTGGTGTTTTTGGTGGGTTGAGATAAGCTACCGTACTCTATTAAGATCCTTCTTGAGTCTGCAATCTGTAACTGCGATGAGTTTCAGGTTAAGACTTTATTCCAAGTTTTTGGCCATTAGGTTGCTTTTTCTGCAGTTATCTATTTGCATCAAGTGCAGTTTTCTGGTTTTACGCTGTTTGCTTCTCTCTGCTGGGACTTTCTGGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

176

Amino Acids

20.86

Weight (kDa)

8.88

Isoelectric Point (pI)

58.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017402)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g03300 pycom04g03380
rosa_chinensis	RchiOBHm_Chr2g0127701 RchiOBHm_Chr2g0166791 RchiOBHm_Chr6g0267371
rosa_samantha	Rh2AG323700 Rh2AG398600 Rh2AG592500 Rh2BG332900 Rh2BG604000 Rh2CG385400 Rh2CG574900
rosa_wichuraiana	Rw2G026270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	106
AclWI	GGATC	1 cut(s)	360
AcoI	YGGCCR	2 cut(s)	165, 432
AcsI	RAATTY	1 cut(s)	29
AfaI	GTAC	3 cut(s)	137, 188, 355
AluBI	AGCT	2 cut(s)	280, 348
AluI	AGCT	2 cut(s)	280, 348
Alw26I	GTCTC	1 cut(s)	107
AlwI	GGATC	1 cut(s)	360
AoxI	GGCC	2 cut(s)	165, 432
ApeKI	GCWGC	1 cut(s)	253
ApoI	RAATTY	1 cut(s)	29
AsuHPI	GGTGA	1 cut(s)	86
BalI	TGGCCA	2 cut(s)	167, 434
BbvI	GCAGC	1 cut(s)	265
BccI	CCATC	2 cut(s)	157, 201
BcoDI	GTCTC	1 cut(s)	107
BfaI	CTAG	2 cut(s)	179, 242
BfmI	CTRYAG	1 cut(s)	452
BisI	GCNGC	1 cut(s)	254
BlpI	GCTNAGC	1 cut(s)	281
BlsI	GCNGC	1 cut(s)	255
BmsI	GCATC	2 cut(s)	277, 477
Bpu1102I	GCTNAGC	1 cut(s)	281
BpuEI	CTTGAG	2 cut(s)	293, 394
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
BseMII	CTCAG	1 cut(s)	272
BseXI	GCAGC	1 cut(s)	265
BseYI	CCCAGC	1 cut(s)	512
BsgI	GTGCAG	1 cut(s)	496
BshFI	GGCC	2 cut(s)	167, 434
BsmAI	GTCTC	1 cut(s)	107
BsnI	GGCC	2 cut(s)	167, 434
Bsp143I	GATC	2 cut(s)	294, 365
Bsp1720I	GCTNAGC	1 cut(s)	281
BspACI	CCGC	1 cut(s)	106
BspANI	GGCC	2 cut(s)	167, 434
BspCNI	CTCAG	1 cut(s)	273
BspMAI	CTGCAG	1 cut(s)	456
BspPI	GGATC	1 cut(s)	360
BssMI	GATC	2 cut(s)	294, 365
Bst4CI	ACNGT	2 cut(s)	265, 353
Bst6I	CTCTTC	1 cut(s)	151
BstAPI	GCANNNNNTGC	1 cut(s)	474
BstC8I	GCNNGC	1 cut(s)	44
BstDEI	CTNAG	1 cut(s)	281
BstEII	GGTNACC	1 cut(s)	211
BstKTI	GATC	2 cut(s)	297, 368
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	2 cut(s)	294, 365
BstMWI	GCNNNNNNNGC	2 cut(s)	451, 474
BstPI	GGTNACC	1 cut(s)	211
BstSFI	CTRYAG	1 cut(s)	452
BstV1I	GCAGC	1 cut(s)	265
BstX2I	RGATCY	1 cut(s)	365
BstXI	CCANNNNNNTGG	1 cut(s)	430
BstYI	RGATCY	1 cut(s)	365
BsuRI	GGCC	2 cut(s)	167, 434
BtgZI	GCGATG	1 cut(s)	410
Cac8I	GCNNGC	1 cut(s)	44
Csp6I	GTAC	3 cut(s)	136, 187, 354
CviAII	CATG	2 cut(s)	60, 71
CviJI	RGCY	7 cut(s)	46, 90, 167, 280, 311, 348, 434
CviKI_1	RGCY	7 cut(s)	46, 90, 167, 280, 311, 348, 434
CviQI	GTAC	3 cut(s)	136, 187, 354
DdeI	CTNAG	1 cut(s)	281
DpnI	GATC	2 cut(s)	296, 367
DpnII	GATC	2 cut(s)	294, 365
EaeI	YGGCCR	2 cut(s)	165, 432
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
Eco91I	GGTNACC	1 cut(s)	211
EcoO65I	GGTNACC	1 cut(s)	211
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	2 cut(s)	63, 74
FaiI	YATR	5 cut(s)	6, 61, 72, 96, 111
FatI	CATG	2 cut(s)	59, 70
Fnu4HI	GCNGC	1 cut(s)	254
Fsp4HI	GCNGC	1 cut(s)	254
FspBI	CTAG	2 cut(s)	179, 242
GluI	GCNGC	1 cut(s)	254
GsaI	CCCAGC	1 cut(s)	516
HaeIII	GGCC	2 cut(s)	167, 434
Hin1II	CATG	2 cut(s)	63, 74
HinfI	GANTC	1 cut(s)	376
HphI	GGTGA	1 cut(s)	86
Hpy166II	GTNNAC	2 cut(s)	136, 189
Hpy188I	TCNGA	2 cut(s)	67, 530
Hpy188III	TCNNGA	5 cut(s)	179, 228, 272, 292, 373
Hpy8I	GTNNAC	2 cut(s)	136, 189
HpyAV	CCTTC	1 cut(s)	379
HpyCH4III	ACNGT	2 cut(s)	265, 353
HpyCH4V	TGCA	9 cut(s)	4, 15, 59, 253, 268, 382, 454, 468, 477
HpyF10VI	GCNNNNNNNGC	2 cut(s)	451, 474
HpyF3I	CTNAG	1 cut(s)	281
Hsp92II	CATG	2 cut(s)	63, 74
Kzo9I	GATC	2 cut(s)	294, 365
Lsp1109I	GCAGC	1 cut(s)	265
LweI	GCATC	2 cut(s)	277, 477
MaeI	CTAG	2 cut(s)	179, 242
MaeIII	GTNAC	3 cut(s)	101, 211, 388
MalI	GATC	2 cut(s)	296, 367
MboI	GATC	2 cut(s)	294, 365
MboII	GAAGA	1 cut(s)	168
MflI	RGATCY	1 cut(s)	365
MlsI	TGGCCA	2 cut(s)	167, 434
MluCI	AATT	1 cut(s)	29
MluNI	TGGCCA	2 cut(s)	167, 434
MlyI	GAGTC	1 cut(s)	385
MnlI	CCTC	4 cut(s)	72, 121, 136, 177
Mox20I	TGGCCA	2 cut(s)	167, 434
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	2 cut(s)	167, 434
MseI	TTAA	2 cut(s)	362, 410
Msp20I	TGGCCA	2 cut(s)	167, 434
MwoI	GCNNNNNNNGC	2 cut(s)	451, 474
NdeII	GATC	2 cut(s)	294, 365
NlaIII	CATG	2 cut(s)	63, 74
NsiI	ATGCAT	1 cut(s)	6
PkrI	GCNGC	1 cut(s)	255
PleI	GAGTC	1 cut(s)	384
PpsI	GAGTC	1 cut(s)	384
PspEI	GGTNACC	1 cut(s)	211
PspFI	CCCAGC	1 cut(s)	512
PstI	CTGCAG	1 cut(s)	456
PsuI	RGATCY	1 cut(s)	365
RsaI	GTAC	3 cut(s)	137, 188, 355
RsaNI	GTAC	3 cut(s)	136, 187, 354
SaqAI	TTAA	2 cut(s)	362, 410
SatI	GCNGC	1 cut(s)	254
Sau3AI	GATC	2 cut(s)	294, 365
SchI	GAGTC	1 cut(s)	385
SetI	ASST	7 cut(s)	25, 88, 188, 282, 350, 410, 443
SfaNI	GCATC	2 cut(s)	277, 477
SfcI	CTRYAG	1 cut(s)	452
SmlI	CTYRAG	2 cut(s)	272, 373
SmoI	CTYRAG	2 cut(s)	272, 373
Sse9I	AATT	1 cut(s)	29
SsiI	CCGC	1 cut(s)	106
SspMI	CTAG	2 cut(s)	179, 242
TaaI	ACNGT	2 cut(s)	265, 353
TasI	AATT	1 cut(s)	29
Tru1I	TTAA	2 cut(s)	362, 410
Tru9I	TTAA	2 cut(s)	362, 410
TseI	GCWGC	1 cut(s)	253
XapI	RAATTY	1 cut(s)	29
XbaI	TCTAGA	1 cut(s)	178
XspI	CTAG	2 cut(s)	179, 242
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.