Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0017402

Physical Location & Seq

Genomic Coordinates Forward (+)

46506700 .. 46510715

Gene Structure 4016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG323700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGTGGCCGAATTCGACTTTCTCCCTCCAGTGGATGCTTCCAACTATTAAACATGGCTCACAACGGATGAAGTGTACTGAAGAAGCTCATCGCCCCGTTGATTGTGGCACAGTGGCCAAATGGATATTGAAGAACAGTGCCGATTCTGAAAATATGAATTGGATATTGGCTAATTCCAAGCCTTGCCCCAAGTGCAAACGAACCATTGAGAAAAACCAAGGCTGTATGCATATCACTTGCACACCACCTTGTAAATTTGAGTTTTGCTGGCTCTGTCTTGGTGCATGGTCAGAACATGGTGAAAGGACAGGTGGCTTTTATGACTGTAACCGCTATGAGACAGCGAAGCAGGAGGGAGTGTATGATGAGGCAGAGAAACGAAGAGAGATGGCCAAGAACTCTCTAGAGAGGTACACCCATTATTATGAAAGATGGGTAACCAATCAGTCGTCCAGACAAAAAGCACTAGCAGACTTGCAGCAGATGACTGTGCATCTTGAGAAGCTGAGCGACATCGTGATCTGGGTTGTTCTGGCTTCTGGGTTTTGGTGTTTTTGGTGGGTTGAGATAAGCTACCGTACTCTATTAAGATCCTTCTTGAGTCTGCAATCTGTAACTGCGATGAGTTTCAGGTTAAGAGTACGTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR

Protein Analysis

216

Amino Acids

25.44

Weight (kDa)

8.86

Isoelectric Point (pI)

60.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBR	PF01485	56 - 99	2.7e-07	IBR domain, a half RING-finger domain
IBR_1	PF22191	57 - 97	3.9e-14	IBR domain
IBR_2	PF22605	58 - 97	3.7e-12	IBR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017402)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g03300 pycom04g03380
rosa_chinensis	RchiOBHm_Chr2g0127701 RchiOBHm_Chr2g0166791 RchiOBHm_Chr6g0267371
rosa_samantha	Rh2AG323700 Rh2AG398600 Rh2AG592500 Rh2BG332900 Rh2BG604000 Rh2CG385400 Rh2CG574900
rosa_wichuraiana	Rw2G026270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	331
AclWI	GGATC	1 cut(s)	585
AcoI	YGGCCR	3 cut(s)	5, 114, 390
AcsI	RAATTY	2 cut(s)	10, 254
AcuI	CTGAAG	1 cut(s)	99
AfaI	GTAC	4 cut(s)	76, 413, 580, 642
AfiI	CCNNNNNNNGG	1 cut(s)	30
AgsI	TTSAA	1 cut(s)	130
AjuI	GAANNNNNNNTTGG	2 cut(s)	149, 181
AluBI	AGCT	3 cut(s)	86, 505, 573
AluI	AGCT	3 cut(s)	86, 505, 573
Alw26I	GTCTC	1 cut(s)	332
AlwI	GGATC	1 cut(s)	585
AoxI	GGCC	3 cut(s)	5, 114, 390
ApeKI	GCWGC	1 cut(s)	478
ApoI	RAATTY	2 cut(s)	10, 254
AsuHPI	GGTGA	1 cut(s)	311
BalI	TGGCCA	2 cut(s)	116, 392
BbvI	GCAGC	1 cut(s)	490
BccI	CCATC	2 cut(s)	382, 426
BcoDI	GTCTC	1 cut(s)	332
BfaI	CTAG	2 cut(s)	404, 467
BisI	GCNGC	1 cut(s)	479
BlpI	GCTNAGC	1 cut(s)	506
BlsI	GCNGC	1 cut(s)	480
BmsI	GCATC	2 cut(s)	24, 502
BpmI	CTGGAG	1 cut(s)	11
Bpu1102I	GCTNAGC	1 cut(s)	506
BpuEI	CTTGAG	2 cut(s)	518, 619
BsaAI	YACGTR	1 cut(s)	644
BsaJI	CCNNGG	1 cut(s)	217
BsaXI	ACNNNNNCTCC	2 cut(s)	344, 374
Bsc4I	CCNNNNNNNGG	1 cut(s)	30
Bse1I	ACTGG	1 cut(s)	28
BseDI	CCNNGG	1 cut(s)	217
BseGI	GGATG	2 cut(s)	39, 72
BseLI	CCNNNNNNNGG	1 cut(s)	30
BseMII	CTCAG	1 cut(s)	497
BseNI	ACTGG	1 cut(s)	28
BseXI	GCAGC	1 cut(s)	490
BshFI	GGCC	3 cut(s)	7, 116, 392
BslI	CCNNNNNNNGG	1 cut(s)	30
BsmAI	GTCTC	1 cut(s)	332
BsnI	GGCC	3 cut(s)	7, 116, 392
Bsp143I	GATC	2 cut(s)	519, 590
Bsp1720I	GCTNAGC	1 cut(s)	506
BspACI	CCGC	1 cut(s)	331
BspANI	GGCC	3 cut(s)	7, 116, 392
BspCNI	CTCAG	1 cut(s)	498
BspPI	GGATC	1 cut(s)	585
BsrI	ACTGG	1 cut(s)	28
BssECI	CCNNGG	1 cut(s)	217
BssMI	GATC	2 cut(s)	519, 590
BssT1I	CCWWGG	1 cut(s)	217
Bst4CI	ACNGT	5 cut(s)	112, 137, 326, 490, 578
Bst6I	CTCTTC	1 cut(s)	376
BstBAI	YACGTR	1 cut(s)	644
BstC8I	GCNNGC	1 cut(s)	269
BstDEI	CTNAG	1 cut(s)	506
BstEII	GGTNACC	1 cut(s)	436
BstF5I	GGATG	2 cut(s)	39, 72
BstKTI	GATC	2 cut(s)	522, 593
BstMAI	GTCTC	1 cut(s)	332
BstMBI	GATC	2 cut(s)	519, 590
BstMWI	GCNNNNNNNGC	1 cut(s)	192
BstPI	GGTNACC	1 cut(s)	436
BstSNI	TACGTA	1 cut(s)	644
BstV1I	GCAGC	1 cut(s)	490
BstX2I	RGATCY	1 cut(s)	590
BstYI	RGATCY	1 cut(s)	590
BsuRI	GGCC	3 cut(s)	7, 116, 392
BtgZI	GCGATG	2 cut(s)	74, 635
BtsCI	GGATG	2 cut(s)	39, 72
BtsIMutI	CAGTG	3 cut(s)	35, 117, 142
Cac8I	GCNNGC	1 cut(s)	269
Csp6I	GTAC	4 cut(s)	75, 412, 579, 641
CviAII	CATG	3 cut(s)	53, 285, 296
CviQI	GTAC	4 cut(s)	75, 412, 579, 641
DdeI	CTNAG	1 cut(s)	506
DpnI	GATC	2 cut(s)	521, 592
DpnII	GATC	2 cut(s)	519, 590
EaeI	YGGCCR	3 cut(s)	5, 114, 390
Eam1104I	CTCTTC	1 cut(s)	376
EarI	CTCTTC	1 cut(s)	376
Eco105I	TACGTA	1 cut(s)	644
Eco130I	CCWWGG	1 cut(s)	217
Eco57I	CTGAAG	1 cut(s)	99
Eco91I	GGTNACC	1 cut(s)	436
EcoO65I	GGTNACC	1 cut(s)	436
EcoRI	GAATTC	1 cut(s)	10
EcoT14I	CCWWGG	1 cut(s)	217
EcoT22I	ATGCAT	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	217
FaeI	CATG	3 cut(s)	56, 288, 299
FatI	CATG	3 cut(s)	52, 284, 295
Fnu4HI	GCNGC	1 cut(s)	479
FokI	GGATG	2 cut(s)	46, 79
Fsp4HI	GCNGC	1 cut(s)	479
FspBI	CTAG	2 cut(s)	404, 467
GluI	GCNGC	1 cut(s)	479
GsuI	CTGGAG	1 cut(s)	11
HaeIII	GGCC	3 cut(s)	7, 116, 392
Hin1II	CATG	3 cut(s)	56, 288, 299
HinfI	GANTC	2 cut(s)	143, 601
HphI	GGTGA	1 cut(s)	311
Hpy166II	GTNNAC	2 cut(s)	75, 414
Hpy188I	TCNGA	2 cut(s)	148, 292
Hpy188III	TCNNGA	5 cut(s)	404, 453, 497, 517, 598
Hpy8I	GTNNAC	2 cut(s)	75, 414
HpyAV	CCTTC	1 cut(s)	604
HpyCH4III	ACNGT	5 cut(s)	112, 137, 326, 490, 578
HpyCH4IV	ACGT	1 cut(s)	643
HpyCH4V	TGCA	7 cut(s)	195, 229, 240, 284, 478, 493, 607
HpyF10VI	GCNNNNNNNGC	1 cut(s)	192
HpyF3I	CTNAG	1 cut(s)	506
HpySE526I	ACGT	1 cut(s)	643
Hsp92II	CATG	3 cut(s)	56, 288, 299
Kzo9I	GATC	2 cut(s)	519, 590
LpnPI	CCDG	9 cut(s)	41, 253, 294, 335, 466, 508, 518, 525, 616
Lsp1109I	GCAGC	1 cut(s)	490
LweI	GCATC	2 cut(s)	24, 502
MaeI	CTAG	2 cut(s)	404, 467
MaeII	ACGT	1 cut(s)	643
MaeIII	GTNAC	3 cut(s)	326, 436, 613
MalI	GATC	2 cut(s)	521, 592
MboI	GATC	2 cut(s)	519, 590
MboII	GAAGA	3 cut(s)	92, 142, 393
MflI	RGATCY	1 cut(s)	590
MlsI	TGGCCA	2 cut(s)	116, 392
MluCI	AATT	4 cut(s)	10, 157, 172, 254
MluNI	TGGCCA	2 cut(s)	116, 392
MlyI	GAGTC	1 cut(s)	610
MmeI	TCCRAC	1 cut(s)	65
MnlI	CCTC	4 cut(s)	35, 346, 361, 402
Mox20I	TGGCCA	2 cut(s)	116, 392
Mph1103I	ATGCAT	1 cut(s)	231
MscI	TGGCCA	2 cut(s)	116, 392
MseI	TTAA	3 cut(s)	48, 587, 635
MslI	CAYNNNNRTG	1 cut(s)	423
Msp20I	TGGCCA	2 cut(s)	116, 392
MwoI	GCNNNNNNNGC	1 cut(s)	192
NdeII	GATC	2 cut(s)	519, 590
NlaIII	CATG	3 cut(s)	56, 288, 299
NsiI	ATGCAT	1 cut(s)	231
PfeI	GAWTC	1 cut(s)	143
PkrI	GCNGC	1 cut(s)	480
PleI	GAGTC	1 cut(s)	609
PpsI	GAGTC	1 cut(s)	609
Ppu21I	YACGTR	1 cut(s)	644
PspEI	GGTNACC	1 cut(s)	436
PsuI	RGATCY	1 cut(s)	590
RsaI	GTAC	4 cut(s)	76, 413, 580, 642
RsaNI	GTAC	4 cut(s)	75, 412, 579, 641
RseI	CAYNNNNRTG	1 cut(s)	423
SaqAI	TTAA	3 cut(s)	48, 587, 635
SatI	GCNGC	1 cut(s)	479
Sau3AI	GATC	2 cut(s)	519, 590
SchI	GAGTC	1 cut(s)	610
SetI	ASST	8 cut(s)	88, 250, 313, 413, 507, 575, 635, 646
SfaNI	GCATC	2 cut(s)	24, 502
SmiMI	CAYNNNNRTG	1 cut(s)	423
SmlI	CTYRAG	2 cut(s)	497, 598
SmoI	CTYRAG	2 cut(s)	497, 598
SnaBI	TACGTA	1 cut(s)	644
Sse9I	AATT	4 cut(s)	10, 157, 172, 254
SsiI	CCGC	1 cut(s)	331
SspMI	CTAG	2 cut(s)	404, 467
StyI	CCWWGG	1 cut(s)	217
TaaI	ACNGT	5 cut(s)	112, 137, 326, 490, 578
TaiI	ACGT	1 cut(s)	646
TaqI	TCGA	1 cut(s)	14
TasI	AATT	4 cut(s)	10, 157, 172, 254
TatI	WGTACW	1 cut(s)	74
TfiI	GAWTC	1 cut(s)	143
Tru1I	TTAA	3 cut(s)	48, 587, 635
Tru9I	TTAA	3 cut(s)	48, 587, 635
TscAI	CASTG	3 cut(s)	35, 117, 142
TseI	GCWGC	1 cut(s)	478
TspDTI	ATGAA	3 cut(s)	83, 170, 441
TspGWI	ACGGA	1 cut(s)	79
TspRI	CASTG	3 cut(s)	35, 117, 142
XapI	RAATTY	2 cut(s)	10, 254
XbaI	TCTAGA	1 cut(s)	403
XspI	CTAG	2 cut(s)	404, 467
Zsp2I	ATGCAT	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.