Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0007896

Physical Location & Seq

Genomic Coordinates Forward (+)

4190920 .. 4194618

Gene Structure 3699 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGGCAAGCAAGGACCTTGCTATCACTGTGGAGTCACAAGCACTCCCCTTTGGCGCAATGGGCCACCTGACAAGCCAGTACTTTGCAATGCATGTGGTTCTCGATGGAGGACTAAGGGAACGCTAGTAAATTACACGCCTCTACATGCTCGAGCAGAACCTGATGATTATGAAGATCACAGAGTTTCTAGGGTGAAGAGCATATCTGTAAACAAAAACAGAGAAATAAAACTGGTCAAAAGAAAGCAGAATCCTGAGAGTGTGGTGGCTGGAGGAGTTAATTCTGATTATTCCCATGGTTTCCGAAAGTTAACTGAAGAAGATACAAGTAATAGGTCCAGTTCTGGGTCTGCTGTGTCTAACTCTGAGAGCTGTGCACAATTTGGCAGCGGAGATGCTAGTGATTTGACAGGTCCTGCTCAGTCAATGGTATGGGATTCGATGGTACCTTCTAGGAAAAGGACCTGTGTAGGCCGTCCTAAGCCATCTCCTGTTGAAAAGCTCACAAAGGATCTGTATACCATTTTACATGAACAACAGTCTTCCTACTTCTCCGGGTCCTCTGAAGAGGATCTGCTTTTTGAGAGTGAAACACCAATGGTTTCTGTTGAGATAGGCCATGGAAGTGTTCTCATTAGGCATCCCAACTCAATAGCACGAGAAGAGGAATCTGAAGCTAGCTCGATTTCGGTTGATAATAAGCAGTGCCATGCAAATGAGGCTTATTCCCATTCTGCAACCCTTTTTGTACATAATAATAACAAGGGTGTCAATATGGCCAGTACTGTATCTGGAAGGATGAATAATCTTTCAGGACAAGGGATGCAACATGAGCCAATGAAAAGGGAAAAGTCTCAACTTGACAACTTGCAAATCTTGGGAAGCCATAATTCACCGCTGTGTCATGTAGATTTAAATTTTAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ASXH GATA RPN13_C

Protein Analysis

310

Amino Acids

34.01

Weight (kDa)

7.2

Isoelectric Point (pI)

54.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	7 - 41	3.1e-14	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17570 AT4G17570 AT4G17570 AT5G47140
fragaria_vesca	FvH4_5g20240 FvH4_5g20240
malus_domestica	MD04G1052000.v1.1 MD06G1048100.v1.1
prunus_persica	Prupe.5G058300_v2.0.a1 Prupe.5G058300_v2.0.a1 Prupe.5G058300_v2.0.a1
pyrus_communis	pycom04g04570 pycom06g04110
rosa_chinensis	RchiOBHm_Chr7g0205311
rosa_laevigata	RLG00000003389
rosa_multiflora	Rmu_sc0001072.1_g000024 Rmu_ssc0000004.1_g000026
rosa_roxburghii	Rroxscaffold_3G00252480
rosa_rugosa	Rorug07G0089600
rosa_samantha	Rh7AG220300 Rh7BG216400 Rh7CG233100 Rh7DG227200
rosa_wichuraiana	Rw7G019040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	445
AccB1I	GGYRCC	1 cut(s)	445
AccI	GTMKAC	1 cut(s)	518
AciI	CCGC	2 cut(s)	390, 896
AclWI	GGATC	2 cut(s)	519, 579
AcoI	YGGCCR	1 cut(s)	777
AcsI	RAATTY	2 cut(s)	916, 923
AcuI	CTGAAG	3 cut(s)	336, 585, 693
AfaI	GTAC	4 cut(s)	81, 447, 750, 784
AfiI	CCNNNNNNNGG	1 cut(s)	345
AgsI	TTSAA	1 cut(s)	497
AleI	CACNNNNGTG	1 cut(s)	898
AluBI	AGCT	4 cut(s)	372, 502, 677, 681
AluI	AGCT	4 cut(s)	372, 502, 677, 681
Alw21I	GWGCWC	1 cut(s)	379
Alw26I	GTCTC	1 cut(s)	858
Alw44I	GTGCAC	1 cut(s)	375
AlwI	GGATC	2 cut(s)	519, 579
AlwNI	CAGNNNCTG	2 cut(s)	161, 416
Ama87I	CYCGRG	1 cut(s)	150
AoxI	GGCC	4 cut(s)	62, 472, 616, 777
ApaLI	GTGCAC	1 cut(s)	375
ApeKI	GCWGC	1 cut(s)	387
ApoI	RAATTY	2 cut(s)	916, 923
Asp718I	GGTACC	1 cut(s)	445
AspLEI	GCGC	1 cut(s)	57
AspS9I	GGNCC	6 cut(s)	14, 62, 336, 413, 462, 558
AsuC2I	CCSGG	1 cut(s)	556
AsuHPI	GGTGA	2 cut(s)	205, 885
AsuNHI	GCTAGC	1 cut(s)	677
AvaI	CYCGRG	1 cut(s)	150
AvaII	GGWCC	5 cut(s)	14, 336, 413, 462, 558
BaeGI	GKGCMC	1 cut(s)	379
BalI	TGGCCA	1 cut(s)	779
BanI	GGYRCC	1 cut(s)	445
BauI	CACGAG	1 cut(s)	657
BbsI	GAAGAC	1 cut(s)	534
Bbv12I	GWGCWC	1 cut(s)	379
BbvI	GCAGC	1 cut(s)	399
BccI	CCATC	3 cut(s)	99, 436, 493
BceAI	ACGGC	1 cut(s)	459
BcnI	CCSGG	1 cut(s)	556
BcoDI	GTCTC	1 cut(s)	858
BfaI	CTAG	5 cut(s)	125, 189, 399, 453, 678
BisI	GCNGC	1 cut(s)	388
BlsI	GCNGC	1 cut(s)	389
BmcAI	AGTACT	2 cut(s)	81, 784
Bme1390I	CCNGG	1 cut(s)	556
Bme18I	GGWCC	5 cut(s)	14, 336, 413, 462, 558
BmeT110I	CYCGRG	1 cut(s)	150
BmgT120I	GGNCC	6 cut(s)	14, 62, 336, 413, 462, 558
BmiI	GGNNCC	2 cut(s)	447, 559
BmrFI	CCNGG	1 cut(s)	556
BmsI	GCATC	3 cut(s)	385, 649, 813
BmtI	GCTAGC	1 cut(s)	681
BpiI	GAAGAC	1 cut(s)	534
BpmI	CTGGAG	1 cut(s)	291
Bpu10I	CCTNAGC	1 cut(s)	480
BpuMI	CCSGG	1 cut(s)	556
BsaJI	CCNNGG	2 cut(s)	295, 619
BsaXI	ACNNNNNCTCC	2 cut(s)	28, 58
Bsc4I	CCNNNNNNNGG	1 cut(s)	345
Bse1I	ACTGG	4 cut(s)	77, 237, 339, 780
Bse3DI	GCAATG	2 cut(s)	64, 94
BseDI	CCNNGG	2 cut(s)	295, 619
BseGI	GGATG	3 cut(s)	640, 804, 828
BseLI	CCNNNNNNNGG	1 cut(s)	345
BseMI	GCAATG	2 cut(s)	64, 94
BseMII	CTCAG	3 cut(s)	246, 357, 434
BseNI	ACTGG	4 cut(s)	77, 237, 339, 780
BseRI	GAGGAG	1 cut(s)	288
BseSI	GKGCMC	1 cut(s)	379
BseXI	GCAGC	1 cut(s)	399
BshFI	GGCC	4 cut(s)	64, 474, 618, 779
BshNI	GGYRCC	1 cut(s)	445
BsiHKAI	GWGCWC	1 cut(s)	379
BsiHKCI	CYCGRG	1 cut(s)	150
BsiSI	CCGG	1 cut(s)	555
BslI	CCNNNNNNNGG	1 cut(s)	345
BsmAI	GTCTC	1 cut(s)	858
BsnI	GGCC	4 cut(s)	64, 474, 618, 779
BsoBI	CYCGRG	1 cut(s)	150
Bsp1286I	GDGCHC	1 cut(s)	379
Bsp1407I	TGTACA	1 cut(s)	748
Bsp143I	GATC	3 cut(s)	175, 511, 571
Bsp19I	CCATGG	2 cut(s)	295, 619
BspACI	CCGC	2 cut(s)	390, 896
BspANI	GGCC	4 cut(s)	64, 474, 618, 779
BspCNI	CTCAG	3 cut(s)	247, 358, 433
BspLI	GGNNCC	2 cut(s)	447, 559
BspOI	GCTAGC	1 cut(s)	681
BspPI	GGATC	2 cut(s)	519, 579
BspQI	GCTCTTC	1 cut(s)	191
BspT107I	GGYRCC	1 cut(s)	445
BsrDI	GCAATG	2 cut(s)	64, 94
BsrGI	TGTACA	1 cut(s)	748
BsrI	ACTGG	4 cut(s)	77, 237, 339, 780
BssECI	CCNNGG	2 cut(s)	295, 619
BssMI	GATC	3 cut(s)	175, 511, 571
BssNAI	GTATAC	1 cut(s)	519
BssSI	CACGAG	1 cut(s)	657
BssT1I	CCWWGG	2 cut(s)	295, 619
Bst1107I	GTATAC	1 cut(s)	519
Bst2BI	CACGAG	1 cut(s)	657
Bst4CI	ACNGT	3 cut(s)	29, 540, 787
Bst6I	CTCTTC	3 cut(s)	191, 561, 657
BstAUI	TGTACA	1 cut(s)	748
BstC8I	GCNNGC	2 cut(s)	8, 679
BstDEI	CTNAG	5 cut(s)	114, 255, 366, 420, 480
BstDSI	CCRYGG	2 cut(s)	295, 619
BstF5I	GGATG	3 cut(s)	640, 804, 828
BstHHI	GCGC	1 cut(s)	57
BstKTI	GATC	3 cut(s)	178, 514, 574
BstMAI	GTCTC	1 cut(s)	858
BstMBI	GATC	3 cut(s)	175, 511, 571
BstMWI	GCNNNNNNNGC	3 cut(s)	61, 719, 832
BstNSI	RCATGY	2 cut(s)	96, 149
BstSCI	CCNGG	1 cut(s)	554
BstSLI	GKGCMC	1 cut(s)	379
BstV1I	GCAGC	1 cut(s)	399
BstV2I	GAAGAC	1 cut(s)	534
BstX2I	RGATCY	2 cut(s)	511, 571
BstYI	RGATCY	2 cut(s)	511, 571
BstZ17I	GTATAC	1 cut(s)	519
BsuRI	GGCC	4 cut(s)	64, 474, 618, 779
BtgI	CCRYGG	2 cut(s)	295, 619
BtsCI	GGATG	3 cut(s)	640, 804, 828
BtsI	GCAGTG	1 cut(s)	710
BtsIMutI	CAGTG	2 cut(s)	25, 710
Cac8I	GCNNGC	2 cut(s)	8, 679
CaiI	CAGNNNCTG	2 cut(s)	161, 416
CfoI	GCGC	1 cut(s)	57
Cfr13I	GGNCC	6 cut(s)	14, 62, 336, 413, 462, 558
Csp6I	GTAC	4 cut(s)	80, 446, 749, 783
CspCI	CAANNNNNGTGG	2 cut(s)	76, 111
CviAII	CATG	8 cut(s)	93, 146, 296, 530, 620, 710, 830, 905
CviQI	GTAC	4 cut(s)	80, 446, 749, 783
DdeI	CTNAG	5 cut(s)	114, 255, 366, 420, 480
DpnI	GATC	3 cut(s)	177, 513, 573
DpnII	GATC	3 cut(s)	175, 511, 571
DraI	TTTAAA	2 cut(s)	915, 922
EaeI	YGGCCR	1 cut(s)	777
Eam1104I	CTCTTC	3 cut(s)	191, 561, 657
EarI	CTCTTC	3 cut(s)	191, 561, 657
Eco130I	CCWWGG	2 cut(s)	295, 619
Eco47I	GGWCC	5 cut(s)	14, 336, 413, 462, 558
Eco57I	CTGAAG	3 cut(s)	336, 585, 693
Eco88I	CYCGRG	1 cut(s)	150
EcoO109I	RGGNCCY	4 cut(s)	14, 413, 462, 558
EcoT14I	CCWWGG	2 cut(s)	295, 619
EcoT22I	ATGCAT	1 cut(s)	94
ErhI	CCWWGG	2 cut(s)	295, 619
FaeI	CATG	8 cut(s)	96, 149, 299, 533, 623, 713, 833, 908
FatI	CATG	8 cut(s)	92, 145, 295, 529, 619, 709, 829, 904
FblI	GTMKAC	1 cut(s)	518
Fnu4HI	GCNGC	1 cut(s)	388
FokI	GGATG	3 cut(s)	627, 811, 835
Fsp4HI	GCNGC	1 cut(s)	388
FspBI	CTAG	5 cut(s)	125, 189, 399, 453, 678
GlaI	GCGC	1 cut(s)	56
GluI	GCNGC	1 cut(s)	388
GsuI	CTGGAG	1 cut(s)	291
HaeIII	GGCC	4 cut(s)	64, 474, 618, 779
HapII	CCGG	1 cut(s)	555
HhaI	GCGC	1 cut(s)	57
Hin1II	CATG	8 cut(s)	96, 149, 299, 533, 623, 713, 833, 908
Hin6I	GCGC	1 cut(s)	55
HinP1I	GCGC	1 cut(s)	55
HincII	GTYRAC	1 cut(s)	312
HindII	GTYRAC	1 cut(s)	312
HinfI	GANTC	4 cut(s)	33, 250, 437, 668
HpaI	GTTAAC	1 cut(s)	312
HpaII	CCGG	1 cut(s)	555
HphI	GGTGA	2 cut(s)	205, 885
Hpy166II	GTNNAC	4 cut(s)	211, 312, 377, 519
Hpy188I	TCNGA	5 cut(s)	286, 305, 367, 565, 673
Hpy188III	TCNNGA	4 cut(s)	102, 254, 792, 813
Hpy8I	GTNNAC	4 cut(s)	211, 312, 377, 519
HpyAV	CCTTC	2 cut(s)	459, 789
HpyCH4III	ACNGT	3 cut(s)	29, 540, 787
HpyCH4V	TGCA	7 cut(s)	87, 92, 377, 713, 737, 826, 871
HpyF10VI	GCNNNNNNNGC	3 cut(s)	61, 719, 832
HpyF3I	CTNAG	5 cut(s)	114, 255, 366, 420, 480
Hsp92II	CATG	8 cut(s)	96, 149, 299, 533, 623, 713, 833, 908
HspAI	GCGC	1 cut(s)	55
KpnI	GGTACC	1 cut(s)	449
KspAI	GTTAAC	1 cut(s)	312
Kzo9I	GATC	3 cut(s)	175, 511, 571
LguI	GCTCTTC	1 cut(s)	191
Lsp1109I	GCAGC	1 cut(s)	399
LweI	GCATC	3 cut(s)	385, 649, 813
MaeI	CTAG	5 cut(s)	125, 189, 399, 453, 678
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	3 cut(s)	177, 513, 573
MboI	GATC	3 cut(s)	175, 511, 571
MboII	GAAGA	7 cut(s)	185, 208, 329, 332, 534, 578, 674
MflI	RGATCY	2 cut(s)	511, 571
MhlI	GDGCHC	1 cut(s)	379
MlsI	TGGCCA	1 cut(s)	779
MluCI	AATT	6 cut(s)	130, 280, 380, 889, 916, 923
MluNI	TGGCCA	1 cut(s)	779
MlyI	GAGTC	1 cut(s)	42
MnlI	CCTC	7 cut(s)	102, 150, 266, 562, 571, 658, 712
Mox20I	TGGCCA	1 cut(s)	779
Mph1103I	ATGCAT	1 cut(s)	94
MscI	TGGCCA	1 cut(s)	779
MseI	TTAA	4 cut(s)	279, 311, 914, 921
MslI	CAYNNNNRTG	3 cut(s)	624, 714, 898
Msp20I	TGGCCA	1 cut(s)	779
MspA1I	CMGCKG	2 cut(s)	390, 898
MspI	CCGG	1 cut(s)	555
MspR9I	CCNGG	1 cut(s)	556
MwoI	GCNNNNNNNGC	3 cut(s)	61, 719, 832
NciI	CCSGG	1 cut(s)	556
NcoI	CCATGG	2 cut(s)	295, 619
NdeII	GATC	3 cut(s)	175, 511, 571
NheI	GCTAGC	1 cut(s)	677
NlaIII	CATG	8 cut(s)	96, 149, 299, 533, 623, 713, 833, 908
NlaIV	GGNNCC	2 cut(s)	447, 559
NmuCI	GTSAC	1 cut(s)	34
NsiI	ATGCAT	1 cut(s)	94
NspI	RCATGY	2 cut(s)	96, 149
OliI	CACNNNNGTG	1 cut(s)	898
PaeR7I	CTCGAG	1 cut(s)	150
PciSI	GCTCTTC	1 cut(s)	191
PfeI	GAWTC	3 cut(s)	250, 437, 668
PkrI	GCNGC	1 cut(s)	389
PleI	GAGTC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	41
PpuMI	RGGWCCY	4 cut(s)	14, 413, 462, 558
Psp5II	RGGWCCY	4 cut(s)	14, 413, 462, 558
PspN4I	GGNNCC	2 cut(s)	447, 559
PspPI	GGNCC	6 cut(s)	14, 62, 336, 413, 462, 558
PspPPI	RGGWCCY	4 cut(s)	14, 413, 462, 558
PspXI	VCTCGAGB	1 cut(s)	150
PstNI	CAGNNNCTG	2 cut(s)	161, 416
PsuI	RGATCY	2 cut(s)	511, 571
RsaI	GTAC	4 cut(s)	81, 447, 750, 784
RsaNI	GTAC	4 cut(s)	80, 446, 749, 783
RseI	CAYNNNNRTG	3 cut(s)	624, 714, 898
SapI	GCTCTTC	1 cut(s)	191
SaqAI	TTAA	4 cut(s)	279, 311, 914, 921
SatI	GCNGC	1 cut(s)	388
Sau3AI	GATC	3 cut(s)	175, 511, 571
Sau96I	GGNCC	6 cut(s)	14, 62, 336, 413, 462, 558
ScaI	AGTACT	2 cut(s)	81, 784
SchI	GAGTC	1 cut(s)	42
ScrFI	CCNGG	1 cut(s)	556
SduI	GDGCHC	1 cut(s)	379
SfaNI	GCATC	3 cut(s)	385, 649, 813
Sfr274I	CTCGAG	1 cut(s)	150
SinI	GGWCC	5 cut(s)	14, 336, 413, 462, 558
SlaI	CTCGAG	1 cut(s)	150
SmiI	ATTTAAAT	1 cut(s)	915
SmiMI	CAYNNNNRTG	3 cut(s)	624, 714, 898
SmlI	CTYRAG	1 cut(s)	150
SmoI	CTYRAG	1 cut(s)	150
Sse9I	AATT	6 cut(s)	130, 280, 380, 889, 916, 923
SsiI	CCGC	2 cut(s)	390, 896
SspMI	CTAG	5 cut(s)	125, 189, 399, 453, 678
StyD4I	CCNGG	1 cut(s)	554
StyI	CCWWGG	2 cut(s)	295, 619
SwaI	ATTTAAAT	1 cut(s)	915
TaaI	ACNGT	3 cut(s)	29, 540, 787
TaqI	TCGA	4 cut(s)	103, 151, 440, 683
TasI	AATT	6 cut(s)	130, 280, 380, 889, 916, 923
TatI	WGTACW	3 cut(s)	79, 748, 782
TfiI	GAWTC	3 cut(s)	250, 437, 668
Tru1I	TTAA	4 cut(s)	279, 311, 914, 921
Tru9I	TTAA	4 cut(s)	279, 311, 914, 921
TscAI	CASTG	2 cut(s)	32, 710
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	1 cut(s)	387
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	4 cut(s)	186, 546, 815, 854
TspRI	CASTG	2 cut(s)	32, 710
VneI	GTGCAC	1 cut(s)	375
VpaK11BI	GGWCC	5 cut(s)	14, 336, 413, 462, 558
XapI	RAATTY	2 cut(s)	916, 923
XceI	RCATGY	2 cut(s)	96, 149
XhoI	CTCGAG	1 cut(s)	150
XmiI	GTMKAC	1 cut(s)	518
XspI	CTAG	5 cut(s)	125, 189, 399, 453, 678
ZrmI	AGTACT	2 cut(s)	81, 784
Zsp2I	ATGCAT	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.