Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0005655

Physical Location & Seq

Genomic Coordinates Reverse (-)

4490613 .. 4495508

Gene Structure 4896 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGAAGAAAGTTTTAATTGGGATAGAAATACAGATGATATACCACATGTTTTTATTCCGTGTCAGCCTTTGTTCTCTTCCCAAAGTCCAAATTTTGGTGCAGCCCAAAAACTCCCCACTTCACATTCCCACTCACTCACGGAGGAACACTGAACAAACGGAACTCAGATATATCCAGATCTCTCTCGCTTCCTCGCAGTCACACAGACTCACAATGAATCACGCTTTGCTCATCTTTTTCATCACTCTAAGGTTGCTCAAAATGGCAGTGGCTGATGAGGGTTTTTGCCCTTCTACTTCAATGGTCGACTCGGGTTCGGACTTGAAGCATTTGTATTGGAAGGTCACCAATCCCACACTCTCTCCTTCCCATCTTCAAGACTTGCCAGGGTTCACACGCAGTGTTTACAAACAAGACCATGCTTTAATAACACCAGAGAGTCATGTCTTTAGTCCTTTACCTGACTGGACTCTGACATTAGGAGCGTATTTGATAACGCCGGCCATGGGTTCACACTTCGTAATGTACCTGGCAAAGATGCAAGAAAACTCACGATCTGGACTCCCCCCAAATGATGTTGAAAGGTTCATATTTGTGGTCCAGGGTGCTGTCACTCTCACCAATGTTTCTGGTACTAGCGACAAATTAACGGTGGACTCATATGCTTATCTACCTCCGAATGTTGATCATTCCCTCAGGTGTGATGCATCTGCCACTCTTGTGGTATTCGAGAGAAGGCATGTTTCTCTGGAAAATCAATCTACTGACCAGATTATAGGTTCAACAGACGAGCAGCCACTCCTGGAAACTCCAGGCGAGGTCTTCCAATTAAGGAAGCTTATTCCGACATCTATATCCTATGACTTCAACATCCATATAATGGACTTCCAGCCTGGGGAGTATCTTAATGTGAAGGAGGTGCATTATAATCAGCATGGCTTGTTGCTCCTGGAGGGACAGGGTATTTACCGATTGGGTGATAGCTGGTACCCTGTTCAAGCAGGTGATGTCATTTGGATGGCACCATTTGTGCCTCAATGGTATGCGGCATTGGGTAAAACCCGGACGCGATATCTACTGTACAAAGACGTAAACAGGAATCCACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003700 GO:0003824 GO:0006139 GO:0006144 GO:0006145 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009889 GO:0009987 GO:0010135 GO:0010136 GO:0010468 GO:0010556 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019219 GO:0019222 GO:0019439 GO:0031323 GO:0031326 GO:0034641 GO:0042737 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0046113 GO:0046483 GO:0046700 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055086 GO:0060255 GO:0065007 GO:0071522 GO:0071704 GO:0072521 GO:0072523 GO:0080090 GO:0140110 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00230 ko01120 map00230 map01120

Pfam Domains

Protein Families

Cupin_2

Protein Analysis

370

Amino Acids

41.95

Weight (kDa)

6.73

Isoelectric Point (pI)

48.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_2	PF07883	293 - 359	4.2e-07	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005655)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17050
fragaria_vesca	FvH4_5g20400 FvH4_5g20400 FvH4_5g20400 FvH4_5g20400 FvH4_5g20400 FvH4_5g20400
malus_domestica	MD04G1055500.v1.1 MD06G1047100.v1.1
prunus_persica	Prupe.5G055300_v2.0.a1 Prupe.5G055300_v2.0.a1 Prupe.5G055300_v2.0.a1 Prupe.5G055300_v2.0.a1
pyrus_communis	pycom04g04880
rosa_chinensis	RchiOBHm_Chr7g0205681
rosa_laevigata	RLG00000003365
rosa_multiflora	Rmu_sc0000233.1_g000001 Rmu_sc0006124.1_g000008
rosa_roxburghii	Rroxscaffold_3G00252080
rosa_rugosa	Rorug07G0092400 Rorug07G0092400
rosa_samantha	Rh5AG401700 Rh7AG223500 Rh7BG218500 Rh7CG236800 Rh7DG230600
rosa_wichuraiana	Rw5G010210 Rw7G019270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	927
AarI	CACCTGC	1 cut(s)	992
Acc36I	ACCTGC	1 cut(s)	992
Acc65I	GGTACC	1 cut(s)	987
AccB1I	GGYRCC	2 cut(s)	987, 1021
AccB7I	CCANNNNNTGG	2 cut(s)	94, 880
AccI	GTMKAC	1 cut(s)	306
AccII	CGCG	1 cut(s)	1069
AciI	CCGC	1 cut(s)	1046
AcoI	YGGCCR	1 cut(s)	501
AcsI	RAATTY	1 cut(s)	90
AdeI	CACNNNGTG	1 cut(s)	401
AfaI	GTAC	4 cut(s)	527, 634, 989, 1082
AfiI	CCNNNNNNNGG	4 cut(s)	94, 506, 880, 895
AflIII	ACRYGT	1 cut(s)	45
AgsI	TTSAA	7 cut(s)	300, 325, 377, 581, 783, 868, 998
AjnI	CCWGG	7 cut(s)	385, 528, 600, 801, 811, 892, 948
AleI	CACNNNNGTG	1 cut(s)	719
AluBI	AGCT	2 cut(s)	838, 984
AluI	AGCT	2 cut(s)	838, 984
AlwNI	CAGNNNCTG	1 cut(s)	272
Ama87I	CYCGRG	1 cut(s)	310
AoxI	GGCC	1 cut(s)	501
ApeKI	GCWGC	2 cut(s)	100, 793
ApoI	RAATTY	1 cut(s)	90
Asp718I	GGTACC	1 cut(s)	987
AspS9I	GGNCC	1 cut(s)	598
AsuC2I	CCSGG	1 cut(s)	1063
AsuHPI	GGTGA	4 cut(s)	337, 610, 989, 1016
AvaI	CYCGRG	1 cut(s)	310
AvaII	GGWCC	1 cut(s)	598
AxyI	CCTNAGG	1 cut(s)	695
BanI	GGYRCC	2 cut(s)	987, 1021
BbsI	GAAGAC	1 cut(s)	814
BbvI	GCAGC	2 cut(s)	112, 805
BccI	CCATC	2 cut(s)	378, 1012
BciT130I	CCWGG	7 cut(s)	387, 530, 602, 803, 813, 894, 950
BclI	TGATCA	1 cut(s)	685
BcnI	CCSGG	1 cut(s)	1063
BfaI	CTAG	1 cut(s)	636
BfuAI	ACCTGC	1 cut(s)	992
BglII	AGATCT	1 cut(s)	177
BisI	GCNGC	3 cut(s)	101, 794, 1047
BlsI	GCNGC	3 cut(s)	102, 795, 1048
Bme1390I	CCNGG	8 cut(s)	387, 530, 602, 803, 813, 894, 950, 1063
Bme18I	GGWCC	1 cut(s)	598
BmeT110I	CYCGRG	1 cut(s)	310
BmgT120I	GGNCC	1 cut(s)	598
BmiI	GGNNCC	2 cut(s)	989, 1023
BmrFI	CCNGG	8 cut(s)	387, 530, 602, 803, 813, 894, 950, 1063
BmsI	GCATC	3 cut(s)	528, 694, 716
BpiI	GAAGAC	1 cut(s)	814
BpmI	CTGGAG	2 cut(s)	795, 971
BpuMI	CCSGG	1 cut(s)	1063
BsaJI	CCNNGG	4 cut(s)	386, 504, 601, 893
BsaXI	ACNNNNNCTCC	2 cut(s)	346, 376
Bsc4I	CCNNNNNNNGG	4 cut(s)	94, 506, 880, 895
Bse118I	RCCGGY	1 cut(s)	499
Bse1I	ACTGG	1 cut(s)	470
Bse21I	CCTNAGG	1 cut(s)	695
BseBI	CCWGG	7 cut(s)	387, 530, 602, 803, 813, 894, 950
BseDI	CCNNGG	4 cut(s)	386, 504, 601, 893
BseGI	GGATG	2 cut(s)	870, 1023
BseLI	CCNNNNNNNGG	4 cut(s)	94, 506, 880, 895
BseMII	CTCAG	2 cut(s)	178, 709
BseNI	ACTGG	1 cut(s)	470
BseXI	GCAGC	2 cut(s)	112, 805
BsgI	GTGCAG	1 cut(s)	119
Bsh1236I	CGCG	1 cut(s)	1069
BshFI	GGCC	1 cut(s)	503
BshNI	GGYRCC	2 cut(s)	987, 1021
BsiHKCI	CYCGRG	1 cut(s)	310
BsiSI	CCGG	2 cut(s)	500, 1063
BslFI	GGGAC	1 cut(s)	969
BslI	CCNNNNNNNGG	4 cut(s)	94, 506, 880, 895
BsmFI	GGGAC	1 cut(s)	969
BsnI	GGCC	1 cut(s)	503
BsoBI	CYCGRG	1 cut(s)	310
Bsp1407I	TGTACA	1 cut(s)	1080
Bsp143I	GATC	3 cut(s)	177, 554, 685
Bsp19I	CCATGG	1 cut(s)	504
BspACI	CCGC	1 cut(s)	1046
BspANI	GGCC	1 cut(s)	503
BspCNI	CTCAG	2 cut(s)	177, 708
BspFNI	CGCG	1 cut(s)	1069
BspLI	GGNNCC	2 cut(s)	989, 1023
BspMI	ACCTGC	1 cut(s)	992
BspT107I	GGYRCC	2 cut(s)	987, 1021
BsrFI	RCCGGY	1 cut(s)	499
BsrGI	TGTACA	1 cut(s)	1080
BsrI	ACTGG	1 cut(s)	470
BssAI	RCCGGY	1 cut(s)	499
BssECI	CCNNGG	4 cut(s)	386, 504, 601, 893
BssMI	GATC	3 cut(s)	177, 554, 685
BssT1I	CCWWGG	1 cut(s)	504
Bst2UI	CCWGG	7 cut(s)	387, 530, 602, 803, 813, 894, 950
Bst4CI	ACNGT	2 cut(s)	652, 1080
Bst6I	CTCTTC	1 cut(s)	81
BstAUI	TGTACA	1 cut(s)	1080
BstC8I	GCNNGC	1 cut(s)	501
BstDEI	CTNAG	3 cut(s)	164, 248, 695
BstDSI	CCRYGG	1 cut(s)	504
BstEII	GGTNACC	1 cut(s)	343
BstF5I	GGATG	2 cut(s)	870, 1023
BstFNI	CGCG	1 cut(s)	1069
BstKTI	GATC	3 cut(s)	180, 557, 688
BstMBI	GATC	3 cut(s)	177, 554, 685
BstNI	CCWGG	7 cut(s)	387, 530, 602, 803, 813, 894, 950
BstNSI	RCATGY	2 cut(s)	49, 743
BstPI	GGTNACC	1 cut(s)	343
BstSCI	CCNGG	8 cut(s)	385, 528, 600, 801, 811, 892, 948, 1061
BstUI	CGCG	1 cut(s)	1069
BstV1I	GCAGC	2 cut(s)	112, 805
BstV2I	GAAGAC	1 cut(s)	814
BstX2I	RGATCY	1 cut(s)	177
BstXI	CCANNNNNNTGG	1 cut(s)	721
BstYI	RGATCY	1 cut(s)	177
Bsu36I	CCTNAGG	1 cut(s)	695
BsuRI	GGCC	1 cut(s)	503
BtgI	CCRYGG	1 cut(s)	504
BtsCI	GGATG	2 cut(s)	870, 1023
BtsI	GCAGTG	2 cut(s)	273, 406
BtsIMutI	CAGTG	3 cut(s)	147, 273, 406
BveI	ACCTGC	1 cut(s)	992
Cac8I	GCNNGC	1 cut(s)	501
CaiI	CAGNNNCTG	1 cut(s)	272
Cfr10I	RCCGGY	1 cut(s)	499
Cfr13I	GGNCC	1 cut(s)	598
CseI	GACGC	1 cut(s)	1075
Csp6I	GTAC	4 cut(s)	526, 633, 988, 1081
CviAII	CATG	6 cut(s)	46, 419, 443, 505, 740, 935
CviJI	RGCY	9 cut(s)	66, 103, 272, 503, 796, 838, 892, 939, 984
CviKI_1	RGCY	9 cut(s)	66, 103, 272, 503, 796, 838, 892, 939, 984
CviQI	GTAC	4 cut(s)	526, 633, 988, 1081
DdeI	CTNAG	3 cut(s)	164, 248, 695
DpnI	GATC	3 cut(s)	179, 556, 687
DpnII	GATC	3 cut(s)	177, 554, 685
DraIII	CACNNNGTG	1 cut(s)	401
EaeI	YGGCCR	1 cut(s)	501
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
Eco130I	CCWWGG	1 cut(s)	504
Eco32I	GATATC	1 cut(s)	1073
Eco47I	GGWCC	1 cut(s)	598
Eco81I	CCTNAGG	1 cut(s)	695
Eco88I	CYCGRG	1 cut(s)	310
Eco91I	GGTNACC	1 cut(s)	343
EcoO65I	GGTNACC	1 cut(s)	343
EcoRII	CCWGG	7 cut(s)	385, 528, 600, 801, 811, 892, 948
EcoRV	GATATC	1 cut(s)	1073
EcoT14I	CCWWGG	1 cut(s)	504
EcoT22I	ATGCAT	1 cut(s)	709
ErhI	CCWWGG	1 cut(s)	504
FaeI	CATG	6 cut(s)	49, 422, 446, 508, 743, 938
FaqI	GGGAC	1 cut(s)	969
FatI	CATG	6 cut(s)	45, 418, 442, 504, 739, 934
FauNDI	CATATG	1 cut(s)	661
FbaI	TGATCA	1 cut(s)	685
FblI	GTMKAC	1 cut(s)	306
Fnu4HI	GCNGC	3 cut(s)	101, 794, 1047
FokI	GGATG	2 cut(s)	857, 1030
Fsp4HI	GCNGC	3 cut(s)	101, 794, 1047
FspBI	CTAG	1 cut(s)	636
GluI	GCNGC	3 cut(s)	101, 794, 1047
GsuI	CTGGAG	2 cut(s)	795, 971
HaeIII	GGCC	1 cut(s)	503
HapII	CCGG	2 cut(s)	500, 1063
HgaI	GACGC	1 cut(s)	1075
Hin1II	CATG	6 cut(s)	49, 422, 446, 508, 743, 938
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HindIII	AAGCTT	1 cut(s)	836
HinfI	GANTC	8 cut(s)	207, 217, 308, 439, 469, 561, 656, 1099
HpaII	CCGG	2 cut(s)	500, 1063
HphI	GGTGA	4 cut(s)	337, 610, 989, 1016
Hpy166II	GTNNAC	6 cut(s)	307, 393, 406, 512, 655, 1093
Hpy188I	TCNGA	5 cut(s)	167, 319, 474, 678, 846
Hpy188III	TCNNGA	6 cut(s)	175, 377, 552, 558, 730, 749
Hpy8I	GTNNAC	6 cut(s)	307, 393, 406, 512, 655, 1093
HpyAV	CCTTC	5 cut(s)	300, 334, 375, 729, 907
HpyCH4III	ACNGT	2 cut(s)	652, 1080
HpyCH4IV	ACGT	1 cut(s)	1089
HpyCH4V	TGCA	4 cut(s)	100, 541, 707, 922
HpyF3I	CTNAG	3 cut(s)	164, 248, 695
HpySE526I	ACGT	1 cut(s)	1089
Hsp92II	CATG	6 cut(s)	49, 422, 446, 508, 743, 938
KpnI	GGTACC	1 cut(s)	991
KroI	GCCGGC	1 cut(s)	499
KroNI	GCCGGC	1 cut(s)	501
Ksp22I	TGATCA	1 cut(s)	685
Kzo9I	GATC	3 cut(s)	177, 554, 685
LmnI	GCTCC	2 cut(s)	482, 951
Lsp1109I	GCAGC	2 cut(s)	112, 805
LweI	GCATC	3 cut(s)	528, 694, 716
MaeI	CTAG	1 cut(s)	636
MaeII	ACGT	1 cut(s)	1089
MaeIII	GTNAC	3 cut(s)	198, 343, 610
MalI	GATC	3 cut(s)	179, 556, 687
MboI	GATC	3 cut(s)	177, 554, 685
MboII	GAAGA	4 cut(s)	16, 68, 365, 814
MflI	RGATCY	1 cut(s)	177
MluCI	AATT	4 cut(s)	15, 90, 644, 827
MlyI	GAGTC	6 cut(s)	201, 302, 448, 463, 555, 650
MmeI	TCCRAC	1 cut(s)	869
MnlI	CCTC	9 cut(s)	135, 202, 271, 684, 704, 811, 910, 946, 1044
Mph1103I	ATGCAT	1 cut(s)	709
MroNI	GCCGGC	1 cut(s)	499
MseI	TTAA	5 cut(s)	14, 425, 647, 830, 906
MslI	CAYNNNNRTG	3 cut(s)	593, 719, 1016
MspI	CCGG	2 cut(s)	500, 1063
MspR9I	CCNGG	8 cut(s)	387, 530, 602, 803, 813, 894, 950, 1063
MvaI	CCWGG	7 cut(s)	387, 530, 602, 803, 813, 894, 950
MvnI	CGCG	1 cut(s)	1069
NaeI	GCCGGC	1 cut(s)	501
NciI	CCSGG	1 cut(s)	1063
NcoI	CCATGG	1 cut(s)	504
NdeI	CATATG	1 cut(s)	661
NdeII	GATC	3 cut(s)	177, 554, 685
NgoMIV	GCCGGC	1 cut(s)	499
NlaIII	CATG	6 cut(s)	49, 422, 446, 508, 743, 938
NlaIV	GGNNCC	2 cut(s)	989, 1023
NmuCI	GTSAC	3 cut(s)	198, 343, 610
NsiI	ATGCAT	1 cut(s)	709
NspI	RCATGY	2 cut(s)	49, 743
OliI	CACNNNNGTG	1 cut(s)	719
PaqCI	CACCTGC	1 cut(s)	992
PciI	ACATGT	1 cut(s)	45
PdiI	GCCGGC	1 cut(s)	501
PfeI	GAWTC	2 cut(s)	217, 1099
PflMI	CCANNNNNTGG	2 cut(s)	94, 880
PfoI	TCCNGGA	2 cut(s)	801, 948
PkrI	GCNGC	3 cut(s)	102, 795, 1048
PleI	GAGTC	6 cut(s)	201, 302, 447, 463, 555, 650
PpsI	GAGTC	6 cut(s)	201, 302, 447, 463, 555, 650
PscI	ACATGT	1 cut(s)	45
PsiI	TTATAA	1 cut(s)	927
Psp6I	CCWGG	7 cut(s)	385, 528, 600, 801, 811, 892, 948
PspEI	GGTNACC	1 cut(s)	343
PspGI	CCWGG	7 cut(s)	385, 528, 600, 801, 811, 892, 948
PspN4I	GGNNCC	2 cut(s)	989, 1023
PspPI	GGNCC	1 cut(s)	598
PstNI	CAGNNNCTG	1 cut(s)	272
PsuI	RGATCY	1 cut(s)	177
RsaI	GTAC	4 cut(s)	527, 634, 989, 1082
RsaNI	GTAC	4 cut(s)	526, 633, 988, 1081
RseI	CAYNNNNRTG	3 cut(s)	593, 719, 1016
SalI	GTCGAC	1 cut(s)	305
SaqAI	TTAA	5 cut(s)	14, 425, 647, 830, 906
SatI	GCNGC	3 cut(s)	101, 794, 1047
Sau3AI	GATC	3 cut(s)	177, 554, 685
Sau96I	GGNCC	1 cut(s)	598
SchI	GAGTC	6 cut(s)	201, 302, 448, 463, 555, 650
ScrFI	CCNGG	8 cut(s)	387, 530, 602, 803, 813, 894, 950, 1063
SfaNI	GCATC	3 cut(s)	528, 694, 716
SinI	GGWCC	1 cut(s)	598
SmiMI	CAYNNNNRTG	3 cut(s)	593, 719, 1016
Sse9I	AATT	4 cut(s)	15, 90, 644, 827
SsiI	CCGC	1 cut(s)	1046
SspMI	CTAG	1 cut(s)	636
StyD4I	CCNGG	8 cut(s)	385, 528, 600, 801, 811, 892, 948, 1061
StyI	CCWWGG	1 cut(s)	504
TaaI	ACNGT	2 cut(s)	652, 1080
TaiI	ACGT	1 cut(s)	1092
TaqI	TCGA	2 cut(s)	306, 729
TasI	AATT	4 cut(s)	15, 90, 644, 827
TatI	WGTACW	1 cut(s)	1080
TauI	GCSGC	1 cut(s)	1049
TfiI	GAWTC	2 cut(s)	217, 1099
Tru1I	TTAA	5 cut(s)	14, 425, 647, 830, 906
Tru9I	TTAA	5 cut(s)	14, 425, 647, 830, 906
TscAI	CASTG	3 cut(s)	154, 273, 406
TseFI	GTSAC	3 cut(s)	198, 343, 610
TseI	GCWGC	2 cut(s)	100, 793
Tsp45I	GTSAC	3 cut(s)	198, 343, 610
TspDTI	ATGAA	4 cut(s)	17, 229, 230, 577
TspGWI	ACGGA	3 cut(s)	47, 154, 173
TspRI	CASTG	3 cut(s)	154, 273, 406
Van91I	CCANNNNNTGG	2 cut(s)	94, 880
VpaK11BI	GGWCC	1 cut(s)	598
XapI	RAATTY	1 cut(s)	90
XceI	RCATGY	2 cut(s)	49, 743
XmiI	GTMKAC	1 cut(s)	306
XspI	CTAG	1 cut(s)	636
Zsp2I	ATGCAT	1 cut(s)	709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.