pycom04g07410

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0013139
Physical Location & Seq
Reverse (-)
7892522 .. 7893028
507 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 507 bp
ATGAGAAGAAACAGGGGTTTCAGGCTAAAACACAAGCTAGTGAGGATCTTCAAATGGATGATCCGATCCAGAAAAGACGAGACTCAGTGCCAAAGACTGGATCCTCCAACCCGAACCTACAACCCGATTTCGAAATTCTTCACCTTGGCTCGCTCTCTTCAACGCGGAGCCAAGGAACTCTGCTCCCCAAACTCGGGTTATATTCGGATCCGTGGAGCCCCGGAGGAAACAAAAGCCACGAAACCGGTTGGTGTGCCGAAGGGGCACATGGCTGTGTACGTCGGCGAATCAGACGCTGACACGCATAGGTATTTAGTGCCGGTCTTGTACTTAAATCACCCTCTGTTTGGGGAGCTGTTGAAGGAGGCTGAGAAGGTTTACGGATACAATCATCCGGGTCGGATCGTGATACCTTGTGGGGTTTCGGAGTTTGAGAAAGTGCAGATGAAGATTGCTGCAGGGGACCAGTGCCTACGGCGGAGAAGAAAAAACCGTCGTTATTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

169

Amino Acids

19.64

Weight (kDa)

10.31

Isoelectric Point (pI)

38.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 64 - 147 2.3e-21 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013139)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12410 AT4G22620
fragaria_vesca FvH4_5g00360
malus_domestica MD04G1082600.v1.1
prunus_persica Prupe.5G076200_v2.0.a1 Prupe.8G063100_v2.0.a1
pyrus_communis pycom04g07410
rosa_chinensis RchiOBHm_Chr7g0202161
rosa_laevigata RLG00000003620
rosa_multiflora Rmu_co8306249.1_g000001 Rmu_sc0003823.1_g000018
rosa_roxburghii Rroxscaffold_3G00254790
rosa_rugosa Rorug07G0068700
rosa_samantha Rh7AG196000 Rh7BG197300 Rh7CG207100 Rh7DG202600
rosa_wichuraiana Rw7G017170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 97
AccII CGCG 1 cut(s) 165
AciI CCGC 2 cut(s) 165, 478
AclWI GGATC 8 cut(s) 53, 55, 60, 95, 108, 202, 215, 410
AcsI RAATTY 1 cut(s) 134
AfaI GTAC 2 cut(s) 278, 329
AfiI CCNNNNNNNGG 4 cut(s) 97, 193, 194, 347
AgeI ACCGGT 1 cut(s) 244
AgsI TTSAA 3 cut(s) 52, 161, 361
AluBI AGCT 2 cut(s) 37, 355
AluI AGCT 2 cut(s) 37, 355
Alw26I GTCTC 1 cut(s) 74
AlwI GGATC 8 cut(s) 53, 55, 60, 95, 108, 202, 215, 410
AlwNI CAGNNNCTG 1 cut(s) 296
Ama87I CYCGRG 1 cut(s) 193
ApeKI GCWGC 1 cut(s) 455
ApoI RAATTY 1 cut(s) 134
AsiGI ACCGGT 1 cut(s) 244
Asp700I GAANNNNTTC 1 cut(s) 137
AspS9I GGNCC 1 cut(s) 463
AsuC2I CCSGG 2 cut(s) 221, 396
AsuHPI GGTGA 2 cut(s) 133, 329
AsuII TTCGAA 1 cut(s) 131
AvaI CYCGRG 1 cut(s) 193
AvaII GGWCC 1 cut(s) 463
BaeGI GKGCMC 1 cut(s) 267
BamHI GGATCC 2 cut(s) 100, 207
BanII GRGCYC 1 cut(s) 220
BbvI GCAGC 1 cut(s) 442
BceAI ACGGC 1 cut(s) 491
BciVI GTATCC 1 cut(s) 377
BcnI CCSGG 2 cut(s) 221, 396
BcoDI GTCTC 1 cut(s) 74
BfaI CTAG 1 cut(s) 38
BfmI CTRYAG 1 cut(s) 456
BfuI GTATCC 1 cut(s) 377
BglI GCCNNNNNGGC 1 cut(s) 262
BisI GCNGC 1 cut(s) 456
BlsI GCNGC 1 cut(s) 457
Bme1390I CCNGG 2 cut(s) 221, 396
Bme18I GGWCC 1 cut(s) 463
BmeT110I CYCGRG 1 cut(s) 193
BmgT120I GGNCC 1 cut(s) 463
BmiI GGNNCC 5 cut(s) 102, 169, 209, 217, 464
BmrFI CCNGG 2 cut(s) 221, 396
Bpu14I TTCGAA 1 cut(s) 131
BpuMI CCSGG 2 cut(s) 221, 396
BsaJI CCNNGG 4 cut(s) 144, 171, 211, 219
BsaWI WCCGGW 1 cut(s) 244
Bsc4I CCNNNNNNNGG 4 cut(s) 97, 193, 194, 347
Bse118I RCCGGY 2 cut(s) 244, 319
Bse1I ACTGG 2 cut(s) 102, 466
BseDI CCNNGG 4 cut(s) 144, 171, 211, 219
BseGI GGATG 2 cut(s) 63, 391
BseLI CCNNNNNNNGG 4 cut(s) 97, 193, 194, 347
BseMII CTCAG 2 cut(s) 98, 360
BseNI ACTGG 2 cut(s) 102, 466
BseSI GKGCMC 1 cut(s) 267
BseXI GCAGC 1 cut(s) 442
BsgI GTGCAG 1 cut(s) 461
Bsh1236I CGCG 1 cut(s) 165
BshTI ACCGGT 1 cut(s) 244
BsiHKCI CYCGRG 1 cut(s) 193
BsiSI CCGG 4 cut(s) 221, 245, 320, 395
BslFI GGGAC 1 cut(s) 476
BslI CCNNNNNNNGG 4 cut(s) 97, 193, 194, 347
BsmAI GTCTC 1 cut(s) 74
BsmFI GGGAC 1 cut(s) 476
BsoBI CYCGRG 1 cut(s) 193
Bsp119I TTCGAA 1 cut(s) 131
Bsp1286I GDGCHC 2 cut(s) 220, 267
Bsp143I GATC 6 cut(s) 45, 60, 65, 100, 207, 402
BspACI CCGC 2 cut(s) 165, 478
BspCNI CTCAG 2 cut(s) 97, 361
BspFNI CGCG 1 cut(s) 165
BspLI GGNNCC 5 cut(s) 102, 169, 209, 217, 464
BspMAI CTGCAG 1 cut(s) 460
BspPI GGATC 8 cut(s) 53, 55, 60, 95, 108, 202, 215, 410
BspT104I TTCGAA 1 cut(s) 131
BsrFI RCCGGY 2 cut(s) 244, 319
BsrI ACTGG 2 cut(s) 102, 466
BssAI RCCGGY 2 cut(s) 244, 319
BssECI CCNNGG 4 cut(s) 144, 171, 211, 219
BssMI GATC 6 cut(s) 45, 60, 65, 100, 207, 402
BssT1I CCWWGG 2 cut(s) 144, 171
Bst4CI ACNGT 1 cut(s) 494
Bst6I CTCTTC 1 cut(s) 162
BstBI TTCGAA 1 cut(s) 131
BstC8I GCNNGC 1 cut(s) 151
BstDEI CTNAG 2 cut(s) 84, 369
BstDSI CCRYGG 1 cut(s) 211
BstF5I GGATG 2 cut(s) 63, 391
BstFNI CGCG 1 cut(s) 165
BstKTI GATC 6 cut(s) 48, 63, 68, 103, 210, 405
BstMAI GTCTC 1 cut(s) 74
BstMBI GATC 6 cut(s) 45, 60, 65, 100, 207, 402
BstMWI GCNNNNNNNGC 1 cut(s) 262
BstSCI CCNGG 2 cut(s) 219, 394
BstSFI CTRYAG 1 cut(s) 456
BstSLI GKGCMC 1 cut(s) 267
BstUI CGCG 1 cut(s) 165
BstV1I GCAGC 1 cut(s) 442
BstX2I RGATCY 3 cut(s) 45, 100, 207
BstYI RGATCY 3 cut(s) 45, 100, 207
BsuI GTATCC 1 cut(s) 377
BtgI CCRYGG 1 cut(s) 211
BtsCI GGATG 2 cut(s) 63, 391
BtsIMutI CAGTG 2 cut(s) 92, 473
Cac8I GCNNGC 1 cut(s) 151
CaiI CAGNNNCTG 1 cut(s) 296
Cfr10I RCCGGY 2 cut(s) 244, 319
Cfr13I GGNCC 1 cut(s) 463
CseI GACGC 1 cut(s) 302
Csp6I GTAC 2 cut(s) 277, 328
CspAI ACCGGT 1 cut(s) 244
CviAII CATG 1 cut(s) 268
CviJI RGCY 9 cut(s) 25, 37, 149, 170, 218, 236, 272, 355, 368
CviKI_1 RGCY 9 cut(s) 25, 37, 149, 170, 218, 236, 272, 355, 368
CviQI GTAC 2 cut(s) 277, 328
DdeI CTNAG 2 cut(s) 84, 369
DpnI GATC 6 cut(s) 47, 62, 67, 102, 209, 404
DpnII GATC 6 cut(s) 45, 60, 65, 100, 207, 402
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
EciI GGCGGA 1 cut(s) 493
Eco130I CCWWGG 2 cut(s) 144, 171
Eco24I GRGCYC 1 cut(s) 220
Eco47I GGWCC 1 cut(s) 463
Eco88I CYCGRG 1 cut(s) 193
EcoT14I CCWWGG 2 cut(s) 144, 171
EcoT38I GRGCYC 1 cut(s) 220
ErhI CCWWGG 2 cut(s) 144, 171
FaeI CATG 1 cut(s) 271
FaiI YATR 3 cut(s) 201, 269, 306
FaqI GGGAC 1 cut(s) 476
FatI CATG 1 cut(s) 267
Fnu4HI GCNGC 1 cut(s) 456
FokI GGATG 2 cut(s) 70, 378
FriOI GRGCYC 1 cut(s) 220
Fsp4HI GCNGC 1 cut(s) 456
FspBI CTAG 1 cut(s) 38
GluI GCNGC 1 cut(s) 456
HapII CCGG 4 cut(s) 221, 245, 320, 395
HgaI GACGC 1 cut(s) 302
Hin1II CATG 1 cut(s) 271
HinfI GANTC 2 cut(s) 82, 287
HpaII CCGG 4 cut(s) 221, 245, 320, 395
HphI GGTGA 2 cut(s) 133, 329
Hpy166II GTNNAC 2 cut(s) 277, 379
Hpy188I TCNGA 5 cut(s) 65, 207, 292, 402, 427
Hpy188III TCNNGA 2 cut(s) 69, 406
Hpy8I GTNNAC 2 cut(s) 277, 379
Hpy99I CGWCG 2 cut(s) 284, 498
HpyAV CCTTC 3 cut(s) 253, 355, 367
HpyCH4III ACNGT 1 cut(s) 494
HpyCH4IV ACGT 1 cut(s) 279
HpyCH4V TGCA 2 cut(s) 442, 458
HpyF10VI GCNNNNNNNGC 1 cut(s) 262
HpyF3I CTNAG 2 cut(s) 84, 369
HpySE526I ACGT 1 cut(s) 279
Hsp92II CATG 1 cut(s) 271
Kzo9I GATC 6 cut(s) 45, 60, 65, 100, 207, 402
LmnI GCTCC 4 cut(s) 167, 188, 215, 352
LpnPI CCDG 9 cut(s) 7, 82, 83, 234, 258, 333, 408, 444, 479
Lsp1109I GCAGC 1 cut(s) 442
MaeI CTAG 1 cut(s) 38
MaeII ACGT 1 cut(s) 279
MalI GATC 6 cut(s) 47, 62, 67, 102, 209, 404
MboI GATC 6 cut(s) 45, 60, 65, 100, 207, 402
MboII GAAGA 6 cut(s) 18, 40, 130, 149, 460, 495
MflI RGATCY 3 cut(s) 45, 100, 207
MhlI GDGCHC 2 cut(s) 220, 267
MluCI AATT 1 cut(s) 134
MlyI GAGTC 1 cut(s) 76
MmeI TCCRAC 2 cut(s) 131, 380
MnlI CCTC 5 cut(s) 36, 114, 217, 351, 358
MroXI GAANNNNTTC 1 cut(s) 137
MseI TTAA 1 cut(s) 332
MslI CAYNNNNRTG 1 cut(s) 272
MspI CCGG 4 cut(s) 221, 245, 320, 395
MspR9I CCNGG 2 cut(s) 221, 396
MvnI CGCG 1 cut(s) 165
MwoI GCNNNNNNNGC 1 cut(s) 262
NciI CCSGG 2 cut(s) 221, 396
NdeII GATC 6 cut(s) 45, 60, 65, 100, 207, 402
NlaIII CATG 1 cut(s) 271
NlaIV GGNNCC 5 cut(s) 102, 169, 209, 217, 464
NspV TTCGAA 1 cut(s) 131
PdmI GAANNNNTTC 1 cut(s) 137
PfeI GAWTC 1 cut(s) 287
PflMI CCANNNNNTGG 1 cut(s) 97
PinAI ACCGGT 1 cut(s) 244
PkrI GCNGC 1 cut(s) 457
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
PspN4I GGNNCC 5 cut(s) 102, 169, 209, 217, 464
PspPI GGNCC 1 cut(s) 463
PstI CTGCAG 1 cut(s) 460
PstNI CAGNNNCTG 1 cut(s) 296
PsuI RGATCY 3 cut(s) 45, 100, 207
RsaI GTAC 2 cut(s) 278, 329
RsaNI GTAC 2 cut(s) 277, 328
RseI CAYNNNNRTG 1 cut(s) 272
SaqAI TTAA 1 cut(s) 332
SatI GCNGC 1 cut(s) 456
Sau3AI GATC 6 cut(s) 45, 60, 65, 100, 207, 402
Sau96I GGNCC 1 cut(s) 463
SchI GAGTC 1 cut(s) 76
ScrFI CCNGG 2 cut(s) 221, 396
SduI GDGCHC 2 cut(s) 220, 267
SetI ASST 8 cut(s) 39, 119, 146, 282, 311, 357, 378, 415
SfcI CTRYAG 1 cut(s) 456
SfuI TTCGAA 1 cut(s) 131
SinI GGWCC 1 cut(s) 463
SmiMI CAYNNNNRTG 1 cut(s) 272
Sse9I AATT 1 cut(s) 134
SsiI CCGC 2 cut(s) 165, 478
SspMI CTAG 1 cut(s) 38
StyD4I CCNGG 2 cut(s) 219, 394
StyI CCWWGG 2 cut(s) 144, 171
TaaI ACNGT 1 cut(s) 494
TaiI ACGT 1 cut(s) 282
TaqI TCGA 1 cut(s) 131
TasI AATT 1 cut(s) 134
TatI WGTACW 1 cut(s) 327
TfiI GAWTC 1 cut(s) 287
Tru1I TTAA 1 cut(s) 332
Tru9I TTAA 1 cut(s) 332
TscAI CASTG 2 cut(s) 92, 473
TseI GCWGC 1 cut(s) 455
TspDTI ATGAA 1 cut(s) 461
TspGWI ACGGA 2 cut(s) 200, 396
TspRI CASTG 2 cut(s) 92, 473
Van91I CCANNNNNTGG 1 cut(s) 97
VpaK11BI GGWCC 1 cut(s) 463
XapI RAATTY 1 cut(s) 134
XmnI GAANNNNTTC 1 cut(s) 137
XspI CTAG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.