Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0014545

Physical Location & Seq

Genomic Coordinates Reverse (-)

12574085 .. 12575669

Gene Structure 1585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g09820.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1467 bp

ATGCATGGAAAATGTGGGTTGTTCACGGATGCGCGTAAGGTTTTCGATGCAATGTCTGAGAGAAATGTGGTTTCTTGGACTTCACTGATTTCTGGGTACTCTCAGAATAGCCAAGAGGATAAAGCCATTGAATTGTACTTCCAAATGCTGAGATCGGGTTGTATGCCTGATCATTTCACCTTTGGAAGCGTCGTAAAAGCCTGTTCGGGTCGGGGGAATGAATTGTTGGGGAGACAGCTGCATGCCCATGTTATAAAATCAGAGACTGGTTCTCACCCTATTGCACAGAATGCCCTTACTTCAATGCACACAAAGTTTGGTCTAATTGCGGACGCCTTTGATGTATTTTCTCGTGTTCCGACTAAGGACTTGATTTCTTGGGGTTCGATGATTGCAGGGTTTTCTCAGCTTGGTTTTGACAAAGAAGCTTTGGATCATTTTAAAGAAATGCTCCGTCAGGGAGCTTACCAGCCAAATGAGTTTATATTTGGGAGTGCTTTCAGTGCGTGTGGCCGCCTTCTTAACCCAGAATTTGGAAAGCAAATACATGGGATGCGCATAAAATTTGGTTTAGGGAGAGAATATTTGCCGGATGCTCACTCTGTGACATGTATGCAAAATGCGGGGTTCTCGAATGCTGGAGATTCTGATGAAGCATTATCATTCTTTTCTCAGATTCGGCACAAGGGACTGATCCCCGATGAAGTTAGTGATCTCCCAATACTTACTGCTTGCACAAGCCCTTCAACGCTCTTTCAGGTCTATCGTTATTGTGTCCAACACTTTGCTAACCATGTTGCAAAGTGTTCAAATCTCTATGATGCATTTCTTGTGTTTGAAGATATAAGAAATCACGCTGATTCAGTTTCTTGGAATGCGATTATTACCACGTGCATGCAGCACAACCAGGCCAGGGAGGTTTTCAAATTACTAAATTTAATGCGTATTTCTGAAACTAAGCCTGATCATATTACTTCGGGTAATGTAATTGGAGCTTGTGCAAATATAGCATCTCTAGAGGTTGCGAATCAGATTCATTGCTTCACTGTAAAAAGTGGGATTGTGCTTGATGTTACTGTCAGCCATGGATTAATTGACATGTATACAAAATGTGGATCAATTGGAAGTGTGCAAAAGCTCTTCGGCTGGATGGAGGATACAGATGTTGTCTCGTGGAGTAGTTTAATCGTGTGTTACGCTCAGTTTGGATATGGAGAGGAAGCTCTTGACCTTTTCGAAAGAATGAAGGAATTGGGCATAAAACCCAATGAAGTAACACTGATAGGTGTCCTTACTGCTTGCAGTCATATCGGACTGGTAGAGGAAGCGTGGAAAGTATATAAAACCATGGAATCCGAGCATGGGATTGTACTGACAATAGAGCATTGTTCTTGTATGGTTGACTTACTTGCTCATTCCGGATGCTTACATGAAGCAGAGGCACTTTATCAAGCAAATAGCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

489

Amino Acids

54.02

Weight (kDa)

5.79

Isoelectric Point (pI)

34.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014545)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53360 AT3G53360
fragaria_vesca	FvH4_6g15460
malus_domestica	MD04G1103100.v1.1 MD12G1123300.v1.1
prunus_persica	Prupe.6G239900_v2.0.a1
pyrus_communis	pycom04g09820 pycom12g12200
rosa_chinensis	RchiOBHm_Chr3g0468941
rosa_laevigata	RLG00000024398
rosa_multiflora	Rmu_co8434945.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412440
rosa_rugosa	Rorug03G0097700
rosa_samantha	Rh3AG147500 Rh3BG170100 Rh3DG205100
rosa_wichuraiana	Rw3G013870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	254
Acc16I	TGCGCA	1 cut(s)	557
AccB7I	CCANNNNNTGG	1 cut(s)	533
AccI	GTMKAC	1 cut(s)	1103
AccII	CGCG	1 cut(s)	34
AccIII	TCCGGA	1 cut(s)	1418
AciI	CCGC	3 cut(s)	329, 514, 623
AclWI	GGATC	3 cut(s)	441, 688, 1123
AcoI	YGGCCR	1 cut(s)	511
AcsI	RAATTY	3 cut(s)	530, 563, 934
AcvI	CACGTG	1 cut(s)	891
AcyI	GRCGYC	1 cut(s)	333
AdeI	CACNNNGTG	1 cut(s)	604
AfaI	GTAC	3 cut(s)	98, 137, 1371
AfiI	CCNNNNNNNGG	3 cut(s)	533, 913, 1362
AflIII	ACRYGT	2 cut(s)	608, 1098
AgsI	TTSAA	6 cut(s)	131, 303, 747, 810, 839, 925
AjnI	CCWGG	2 cut(s)	906, 911
AjuI	GAANNNNNNNTTGG	2 cut(s)	209, 241
AluBI	AGCT	7 cut(s)	238, 409, 428, 464, 995, 1138, 1223
AluI	AGCT	7 cut(s)	238, 409, 428, 464, 995, 1138, 1223
Alw26I	GTCTC	3 cut(s)	226, 257, 1174
AlwI	GGATC	3 cut(s)	441, 688, 1123
AlwNI	CAGNNNCTG	1 cut(s)	266
Aor13HI	TCCGGA	1 cut(s)	1418
AoxI	GGCC	2 cut(s)	511, 909
ApeKI	GCWGC	2 cut(s)	238, 898
ApoI	RAATTY	3 cut(s)	530, 563, 934
AseI	ATTAAT	1 cut(s)	1091
AspLEI	GCGC	2 cut(s)	34, 558
AsuHPI	GGTGA	2 cut(s)	169, 266
AsuII	TTCGAA	1 cut(s)	1236
BaeI	ACNNNNGTAYC	2 cut(s)	1149, 1182
BauI	CACGAG	2 cut(s)	351, 1171
BbrPI	CACGTG	1 cut(s)	891
BbvI	GCAGC	2 cut(s)	225, 910
BccI	CCATC	1 cut(s)	1144
BcgI	CGANNNNNNTGC	2 cut(s)	1291, 1325
BciT130I	CCWGG	2 cut(s)	908, 913
BciVI	GTATCC	1 cut(s)	1150
BclI	TGATCA	2 cut(s)	169, 964
BcoDI	GTCTC	3 cut(s)	226, 257, 1174
BfaI	CTAG	1 cut(s)	1016
BfuI	GTATCC	1 cut(s)	1150
BisI	GCNGC	3 cut(s)	239, 514, 899
BlsI	GCNGC	3 cut(s)	240, 515, 900
Bme1390I	CCNGG	2 cut(s)	908, 913
BmrFI	CCNGG	2 cut(s)	908, 913
BmsI	GCATC	7 cut(s)	19, 37, 543, 583, 811, 1019, 1412
BpmI	CTGGAG	1 cut(s)	660
Bpu14I	TTCGAA	1 cut(s)	1236
BsaAI	YACGTR	1 cut(s)	891
BsaHI	GRCGYC	1 cut(s)	333
BsaJI	CCNNGG	3 cut(s)	912, 1084, 1347
BsaWI	WCCGGW	1 cut(s)	1418
Bsc4I	CCNNNNNNNGG	3 cut(s)	533, 913, 1362
Bse1I	ACTGG	2 cut(s)	271, 1320
Bse3DI	GCAATG	2 cut(s)	57, 1036
BseAI	TCCGGA	1 cut(s)	1418
BseBI	CCWGG	2 cut(s)	908, 913
BseDI	CCNNGG	3 cut(s)	912, 1084, 1347
BseGI	GGATG	5 cut(s)	34, 558, 598, 1155, 1427
BseLI	CCNNNNNNNGG	3 cut(s)	533, 913, 1362
BseMI	GCAATG	2 cut(s)	57, 1036
BseMII	CTCAG	6 cut(s)	48, 116, 140, 419, 686, 1214
BseNI	ACTGG	2 cut(s)	271, 1320
BseXI	GCAGC	2 cut(s)	225, 910
Bsh1236I	CGCG	1 cut(s)	34
BshFI	GGCC	2 cut(s)	513, 911
BsiSI	CCGG	2 cut(s)	590, 1419
BslFI	GGGAC	1 cut(s)	702
BslI	CCNNNNNNNGG	3 cut(s)	533, 913, 1362
BsmAI	GTCTC	3 cut(s)	226, 257, 1174
BsmFI	GGGAC	1 cut(s)	702
BsmI	GAATGC	3 cut(s)	295, 640, 880
BsnI	GGCC	2 cut(s)	513, 911
Bsp119I	TTCGAA	1 cut(s)	1236
Bsp13I	TCCGGA	1 cut(s)	1418
Bsp143I	GATC	7 cut(s)	152, 169, 433, 693, 712, 964, 1115
Bsp19I	CCATGG	2 cut(s)	1084, 1347
BspACI	CCGC	3 cut(s)	329, 514, 623
BspANI	GGCC	2 cut(s)	513, 911
BspCNI	CTCAG	6 cut(s)	49, 115, 141, 418, 685, 1213
BspEI	TCCGGA	1 cut(s)	1418
BspFNI	CGCG	1 cut(s)	34
BspPI	GGATC	3 cut(s)	441, 688, 1123
BspQI	GCTCTTC	1 cut(s)	1145
BspT104I	TTCGAA	1 cut(s)	1236
BsrDI	GCAATG	2 cut(s)	57, 1036
BsrI	ACTGG	2 cut(s)	271, 1320
BssECI	CCNNGG	3 cut(s)	912, 1084, 1347
BssMI	GATC	7 cut(s)	152, 169, 433, 693, 712, 964, 1115
BssNAI	GTATAC	1 cut(s)	1104
BssNI	GRCGYC	1 cut(s)	333
BssSI	CACGAG	2 cut(s)	351, 1171
BssT1I	CCWWGG	2 cut(s)	1084, 1347
Bst1107I	GTATAC	1 cut(s)	1104
Bst2BI	CACGAG	2 cut(s)	351, 1171
Bst2UI	CCWGG	2 cut(s)	908, 913
Bst4CI	ACNGT	2 cut(s)	1048, 1078
Bst6I	CTCTTC	1 cut(s)	1145
BstACI	GRCGYC	1 cut(s)	333
BstAPI	GCANNNNNTGC	1 cut(s)	290
BstBAI	YACGTR	1 cut(s)	891
BstBI	TTCGAA	1 cut(s)	1236
BstC8I	GCNNGC	4 cut(s)	243, 733, 896, 1300
BstDEI	CTNAG	8 cut(s)	57, 102, 149, 363, 405, 672, 957, 1200
BstDSI	CCRYGG	2 cut(s)	1084, 1347
BstF5I	GGATG	5 cut(s)	34, 558, 598, 1155, 1427
BstFNI	CGCG	1 cut(s)	34
BstHHI	GCGC	2 cut(s)	34, 558
BstKTI	GATC	7 cut(s)	155, 172, 436, 696, 715, 967, 1118
BstMAI	GTCTC	3 cut(s)	226, 257, 1174
BstMBI	GATC	7 cut(s)	152, 169, 433, 693, 712, 964, 1115
BstMWI	GCNNNNNNNGC	3 cut(s)	290, 503, 1007
BstNI	CCWGG	2 cut(s)	908, 913
BstNSI	RCATGY	4 cut(s)	245, 612, 898, 1102
BstSCI	CCNGG	2 cut(s)	906, 911
BstUI	CGCG	1 cut(s)	34
BstV1I	GCAGC	2 cut(s)	225, 910
BstZ17I	GTATAC	1 cut(s)	1104
BsuI	GTATCC	1 cut(s)	1150
BsuRI	GGCC	2 cut(s)	513, 911
BtgI	CCRYGG	2 cut(s)	1084, 1347
BtsCI	GGATG	5 cut(s)	34, 558, 598, 1155, 1427
BtsIMutI	CAGTG	4 cut(s)	83, 508, 1044, 1277
Cac8I	GCNNGC	4 cut(s)	243, 733, 896, 1300
CaiI	CAGNNNCTG	1 cut(s)	266
CfoI	GCGC	2 cut(s)	34, 558
CseI	GACGC	2 cut(s)	178, 341
Csp6I	GTAC	3 cut(s)	97, 136, 1370
CviQI	GTAC	3 cut(s)	97, 136, 1370
DdeI	CTNAG	8 cut(s)	57, 102, 149, 363, 405, 672, 957, 1200
DpnI	GATC	7 cut(s)	154, 171, 435, 695, 714, 966, 1117
DpnII	GATC	7 cut(s)	152, 169, 433, 693, 712, 964, 1115
DraI	TTTAAA	1 cut(s)	442
DraIII	CACNNNGTG	1 cut(s)	604
EaeI	YGGCCR	1 cut(s)	511
Eam1104I	CTCTTC	1 cut(s)	1145
EarI	CTCTTC	1 cut(s)	1145
Eco130I	CCWWGG	2 cut(s)	1084, 1347
Eco72I	CACGTG	1 cut(s)	891
EcoRII	CCWGG	2 cut(s)	906, 911
EcoT14I	CCWWGG	2 cut(s)	1084, 1347
EcoT22I	ATGCAT	2 cut(s)	6, 826
ErhI	CCWWGG	2 cut(s)	1084, 1347
FaqI	GGGAC	1 cut(s)	702
FauI	CCCGC	1 cut(s)	616
FbaI	TGATCA	2 cut(s)	169, 964
FblI	GTMKAC	1 cut(s)	1103
Fnu4HI	GCNGC	3 cut(s)	239, 514, 899
FokI	GGATG	5 cut(s)	41, 565, 605, 1162, 1434
Fsp4HI	GCNGC	3 cut(s)	239, 514, 899
FspAI	RTGCGCAY	1 cut(s)	557
FspBI	CTAG	1 cut(s)	1016
FspI	TGCGCA	1 cut(s)	557
GlaI	GCGC	2 cut(s)	33, 557
GluI	GCNGC	3 cut(s)	239, 514, 899
GsuI	CTGGAG	1 cut(s)	660
HaeIII	GGCC	2 cut(s)	513, 911
HapII	CCGG	2 cut(s)	590, 1419
HgaI	GACGC	2 cut(s)	178, 341
HhaI	GCGC	2 cut(s)	34, 558
Hin1I	GRCGYC	1 cut(s)	333
Hin6I	GCGC	2 cut(s)	32, 556
HinP1I	GCGC	2 cut(s)	32, 556
HincII	GTYRAC	1 cut(s)	1402
HindII	GTYRAC	1 cut(s)	1402
HindIII	AAGCTT	1 cut(s)	426
HinfI	GANTC	6 cut(s)	644, 676, 860, 1027, 1033, 1352
HpaII	CCGG	2 cut(s)	590, 1419
HphI	GGTGA	2 cut(s)	169, 266
Hpy166II	GTNNAC	3 cut(s)	24, 1104, 1402
Hpy188III	TCNNGA	4 cut(s)	631, 1016, 1226, 1419
Hpy8I	GTNNAC	3 cut(s)	24, 1104, 1402
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	3 cut(s)	527, 753, 1240
HpyCH4III	ACNGT	2 cut(s)	1048, 1078
HpyCH4IV	ACGT	1 cut(s)	890
HpyF10VI	GCNNNNNNNGC	3 cut(s)	290, 503, 1007
HpyF3I	CTNAG	8 cut(s)	57, 102, 149, 363, 405, 672, 957, 1200
HpySE526I	ACGT	1 cut(s)	890
Hsp92I	GRCGYC	1 cut(s)	333
HspAI	GCGC	2 cut(s)	32, 556
Kpn2I	TCCGGA	1 cut(s)	1418
Ksp22I	TGATCA	2 cut(s)	169, 964
Kzo9I	GATC	7 cut(s)	152, 169, 433, 693, 712, 964, 1115
LguI	GCTCTTC	1 cut(s)	1145
LmnI	GCTCC	3 cut(s)	456, 461, 992
Lsp1109I	GCAGC	2 cut(s)	225, 910
LweI	GCATC	7 cut(s)	19, 37, 543, 583, 811, 1019, 1412
MaeI	CTAG	1 cut(s)	1016
MaeII	ACGT	1 cut(s)	890
MaeIII	GTNAC	4 cut(s)	604, 1072, 1193, 1273
MalI	GATC	7 cut(s)	154, 171, 435, 695, 714, 966, 1117
MboI	GATC	7 cut(s)	152, 169, 433, 693, 712, 964, 1115
MboII	GAAGA	2 cut(s)	851, 1132
MfeI	CAATTG	1 cut(s)	1119
MmeI	TCCRAC	2 cut(s)	383, 802
MnlI	CCTC	7 cut(s)	109, 910, 1012, 1147, 1210, 1315, 1432
Mph1103I	ATGCAT	2 cut(s)	6, 826
MroI	TCCGGA	1 cut(s)	1418
MseI	TTAA	5 cut(s)	441, 522, 938, 1091, 1184
MslI	CAYNNNNRTG	2 cut(s)	246, 893
MspA1I	CMGCKG	1 cut(s)	238
MspI	CCGG	2 cut(s)	590, 1419
MspR9I	CCNGG	2 cut(s)	908, 913
MunI	CAATTG	1 cut(s)	1119
Mva1269I	GAATGC	3 cut(s)	295, 640, 880
MvaI	CCWGG	2 cut(s)	908, 913
MvnI	CGCG	1 cut(s)	34
MwoI	GCNNNNNNNGC	3 cut(s)	290, 503, 1007
NcoI	CCATGG	2 cut(s)	1084, 1347
NdeII	GATC	7 cut(s)	152, 169, 433, 693, 712, 964, 1115
NmuCI	GTSAC	1 cut(s)	604
NsbI	TGCGCA	1 cut(s)	557
NsiI	ATGCAT	2 cut(s)	6, 826
NspI	RCATGY	4 cut(s)	245, 612, 898, 1102
NspV	TTCGAA	1 cut(s)	1236
PaeI	GCATGC	2 cut(s)	245, 898
PciI	ACATGT	2 cut(s)	608, 1098
PciSI	GCTCTTC	1 cut(s)	1145
PctI	GAATGC	3 cut(s)	295, 640, 880
PfeI	GAWTC	6 cut(s)	644, 676, 860, 1027, 1033, 1352
PflMI	CCANNNNNTGG	1 cut(s)	533
PkrI	GCNGC	3 cut(s)	240, 515, 900
PmaCI	CACGTG	1 cut(s)	891
PmlI	CACGTG	1 cut(s)	891
Ppu21I	YACGTR	1 cut(s)	891
PscI	ACATGT	2 cut(s)	608, 1098
PshBI	ATTAAT	1 cut(s)	1091
PsiI	TTATAA	1 cut(s)	254
Psp6I	CCWGG	2 cut(s)	906, 911
PspCI	CACGTG	1 cut(s)	891
PspGI	CCWGG	2 cut(s)	906, 911
PstNI	CAGNNNCTG	1 cut(s)	266
PvuII	CAGCTG	1 cut(s)	238
RsaI	GTAC	3 cut(s)	98, 137, 1371
RsaNI	GTAC	3 cut(s)	97, 136, 1370
RseI	CAYNNNNRTG	2 cut(s)	246, 893
SapI	GCTCTTC	1 cut(s)	1145
SaqAI	TTAA	5 cut(s)	441, 522, 938, 1091, 1184
SatI	GCNGC	3 cut(s)	239, 514, 899
Sau3AI	GATC	7 cut(s)	152, 169, 433, 693, 712, 964, 1115
ScrFI	CCNGG	2 cut(s)	908, 913
SfaNI	GCATC	7 cut(s)	19, 37, 543, 583, 811, 1019, 1412
SfuI	TTCGAA	1 cut(s)	1236
SmiMI	CAYNNNNRTG	2 cut(s)	246, 893
SphI	GCATGC	2 cut(s)	245, 898
SsiI	CCGC	3 cut(s)	329, 514, 623
SspI	AATATT	1 cut(s)	584
SspMI	CTAG	1 cut(s)	1016
StyD4I	CCNGG	2 cut(s)	906, 911
StyI	CCWWGG	2 cut(s)	1084, 1347
TaaI	ACNGT	2 cut(s)	1048, 1078
TaiI	ACGT	1 cut(s)	893
TaqI	TCGA	4 cut(s)	45, 386, 632, 1236
TatI	WGTACW	2 cut(s)	135, 1369
TauI	GCSGC	1 cut(s)	516
TfiI	GAWTC	6 cut(s)	644, 676, 860, 1027, 1033, 1352
Tru1I	TTAA	5 cut(s)	441, 522, 938, 1091, 1184
Tru9I	TTAA	5 cut(s)	441, 522, 938, 1091, 1184
TscAI	CASTG	4 cut(s)	90, 508, 1051, 1284
TseFI	GTSAC	1 cut(s)	604
TseI	GCWGC	2 cut(s)	238, 898
Tsp45I	GTSAC	1 cut(s)	604
TspDTI	ATGAA	7 cut(s)	234, 666, 717, 1025, 1259, 1284, 1446
TspGWI	ACGGA	2 cut(s)	41, 443
TspRI	CASTG	4 cut(s)	90, 508, 1051, 1284
Van91I	CCANNNNNTGG	1 cut(s)	533
VspI	ATTAAT	1 cut(s)	1091
XapI	RAATTY	3 cut(s)	530, 563, 934
XbaI	TCTAGA	1 cut(s)	1015
XceI	RCATGY	4 cut(s)	245, 612, 898, 1102
XmiI	GTMKAC	1 cut(s)	1103
XspI	CTAG	1 cut(s)	1016
Zsp2I	ATGCAT	2 cut(s)	6, 826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.