Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8434945.1

Orthogroup ID

OG0014545

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1531

Gene Structure 1531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8434945.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1482 bp

ggttttcgcaacttggttatgagaaagaagctttggctcattttaaggaaatgctgtgtcagggtgctcacacgccgaatgagtttatatttggaagtgcttttagtgcgtgtagcggtcttgttcaaccggaatatggaaggcagatacatgggatgtgcataaagtttggtttagggagagacaattttgctggatgctccctttgtgacatgtatgcaaagtgtggacatttagagtctgcaagaactgtattttgtcacatagaccgacctgatttggtgtcctggaatgcaatgatctcggggtgttctagtgttggagatgccaatgaagcggtatcgttcttttctaggatgcagcatatgagactaatccccgatgaagttagtgttctctctgtactttctgcttgcacgagctctccaacactttctcagggtagacaggttcactcctacattatcaaggcagcttttgatttcactgtcgctgtgtgtaatgctttgctaacaatgtatgcaaagtgttcaaatctcgatgatgcatttgttgtgtttgaaaatatgagaaatcatactgattctgtttcttggaatgccattattacagcgtgcatgcagcacaaccaagctggagaagttttcagattattgaagataatgcttagttctgaaattaggcctgattatattactttaagtaatgtaattggagcatgtgcagatatagcatctctggaagttgggaatcaaattcattgctttactgtgaaaagtgggtttgtacttggtgttactgtcagcaatggattggttgacatgtatacaaagtgtggatcgcttgaaagtgccagaaagctctttagtttgatggagaatccagatgttgtgtcatggagtagtttgattatgggttatgctcagttcggatgtggagaggaagctcttgagctgtttaaaacaatgaaagcattgggtgtaaaaccaaatgaagttacaatggtgggggtccttacagcttgcagtcatattggactggttgaagaagggcggcaattgtataaaaccatggaatctgaacatggtattgtgccgacaagagagcattgttcttgtatggttgacttacttgctcgtgccggatgcttacatgaagcggaggagttcatcaagaaaatgacatttgaacccgacattgtggtgtggaagactctactagctgcctgcaaaacctgtgggaacactgaaataggaaaacaggcagcagagaatgtactaaaactagatccttccaattctgctgcacttgtgttactttgcaacatcaatgcttcttctggcagatgggatgaagttgccaggttgaggaatatgatgcgagaaagtggcgtaaagaaagttccaggtcagagctggattgaagtcaaggataggatccatgtatttttagttgaagatagttcgcaccctgagaggggtc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

493

Amino Acids

54.15

Weight (kDa)

5.83

Isoelectric Point (pI)

35.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014545)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53360 AT3G53360
fragaria_vesca	FvH4_6g15460
malus_domestica	MD04G1103100.v1.1 MD12G1123300.v1.1
prunus_persica	Prupe.6G239900_v2.0.a1
pyrus_communis	pycom04g09820 pycom12g12200
rosa_chinensis	RchiOBHm_Chr3g0468941
rosa_laevigata	RLG00000024398
rosa_multiflora	Rmu_co8434945.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412440
rosa_rugosa	Rorug03G0097700
rosa_samantha	Rh3AG147500 Rh3BG170100 Rh3DG205100
rosa_wichuraiana	Rw3G013870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	444, 826
AciI	CCGC	4 cut(s)	116, 337, 1053, 1159
AclWI	GGATC	4 cut(s)	846, 1282, 1431, 1444
AcsI	RAATTY	1 cut(s)	755
AfaI	GTAC	3 cut(s)	404, 788, 1277
AfiI	CCNNNNNNNGG	4 cut(s)	136, 1367, 1476, 1477
AflIII	ACRYGT	2 cut(s)	212, 821
AgsI	TTSAA	9 cut(s)	127, 533, 562, 657, 847, 1045, 1189, 1423, 1456
AjnI	CCWGG	3 cut(s)	286, 1360, 1404
AjuI	GAANNNNNNNTTGG	2 cut(s)	16, 48
Alw21I	GWGCWC	2 cut(s)	69, 424
Alw26I	GTCTC	2 cut(s)	176, 363
AlwI	GGATC	4 cut(s)	846, 1282, 1431, 1444
Ama87I	CYCGRG	1 cut(s)	303
AoxI	GGCC	1 cut(s)	682
ApeKI	GCWGC	6 cut(s)	360, 472, 621, 1222, 1264, 1303
ApoI	RAATTY	1 cut(s)	755
AspS9I	GGNCC	1 cut(s)	1011
AvaI	CYCGRG	1 cut(s)	303
AvaII	GGWCC	1 cut(s)	1011
BamHI	GGATCC	1 cut(s)	1436
BanII	GRGCYC	1 cut(s)	424
BauI	CACGAG	2 cut(s)	417, 1136
BbsI	GAAGAC	1 cut(s)	1216
Bbv12I	GWGCWC	2 cut(s)	69, 424
BbvI	GCAGC	6 cut(s)	372, 484, 633, 1209, 1276, 1290
BccI	CCATC	2 cut(s)	867, 1340
BcgI	CGANNNNNNTGC	2 cut(s)	284, 318
BciT130I	CCWGG	3 cut(s)	288, 1362, 1406
BcoDI	GTCTC	2 cut(s)	176, 363
BfaI	CTAG	4 cut(s)	314, 353, 1219, 1285
BisI	GCNGC	7 cut(s)	361, 473, 622, 1054, 1223, 1265, 1304
BlsI	GCNGC	7 cut(s)	362, 474, 623, 1055, 1224, 1266, 1305
Bme1390I	CCNGG	3 cut(s)	288, 1362, 1406
Bme18I	GGWCC	1 cut(s)	1011
BmeT110I	CYCGRG	1 cut(s)	303
BmgT120I	GGNCC	1 cut(s)	1011
BmiI	GGNNCC	2 cut(s)	1012, 1438
BmrFI	CCNGG	3 cut(s)	288, 1362, 1406
BmsI	GCATC	7 cut(s)	187, 315, 347, 534, 742, 1135, 1367
BpiI	GAAGAC	1 cut(s)	1216
BpmI	CTGGAG	1 cut(s)	656
BpuEI	CTTGAG	1 cut(s)	970
BsaJI	CCNNGG	1 cut(s)	1070
BsaWI	WCCGGW	1 cut(s)	129
BsaXI	ACNNNNNCTCC	2 cut(s)	408, 438
Bsc4I	CCNNNNNNNGG	4 cut(s)	136, 1367, 1476, 1477
Bse1I	ACTGG	1 cut(s)	1043
Bse3DI	GCAATG	3 cut(s)	302, 759, 813
BseBI	CCWGG	3 cut(s)	288, 1362, 1406
BseDI	CCNNGG	1 cut(s)	1070
BseGI	GGATG	6 cut(s)	161, 202, 362, 937, 1150, 1356
BseLI	CCNNNNNNNGG	4 cut(s)	136, 1367, 1476, 1477
BseMI	GCAATG	3 cut(s)	302, 759, 813
BseMII	CTCAG	3 cut(s)	451, 937, 1463
BseNI	ACTGG	1 cut(s)	1043
BseRI	GAGGAG	1 cut(s)	1177
BseXI	GCAGC	6 cut(s)	372, 484, 633, 1209, 1276, 1290
BsgI	GTGCAG	2 cut(s)	743, 1289
BshFI	GGCC	1 cut(s)	684
BsiHKAI	GWGCWC	2 cut(s)	69, 424
BsiHKCI	CYCGRG	1 cut(s)	303
BsiSI	CCGG	2 cut(s)	130, 1142
BslI	CCNNNNNNNGG	4 cut(s)	136, 1367, 1476, 1477
BsmAI	GTCTC	2 cut(s)	176, 363
BsmI	GAATGC	2 cut(s)	297, 603
BsnI	GGCC	1 cut(s)	684
BsoBI	CYCGRG	1 cut(s)	303
Bsp1286I	GDGCHC	2 cut(s)	69, 424
Bsp143I	GATC	4 cut(s)	299, 838, 1287, 1436
Bsp19I	CCATGG	1 cut(s)	1070
BspACI	CCGC	4 cut(s)	116, 337, 1053, 1159
BspANI	GGCC	1 cut(s)	684
BspCNI	CTCAG	3 cut(s)	450, 936, 1464
BspLI	GGNNCC	2 cut(s)	1012, 1438
BspPI	GGATC	4 cut(s)	846, 1282, 1431, 1444
BsrDI	GCAATG	3 cut(s)	302, 759, 813
BsrI	ACTGG	1 cut(s)	1043
BssECI	CCNNGG	1 cut(s)	1070
BssMI	GATC	4 cut(s)	299, 838, 1287, 1436
BssNAI	GTATAC	1 cut(s)	827
BssSI	CACGAG	2 cut(s)	417, 1136
BssT1I	CCWWGG	1 cut(s)	1070
Bst1107I	GTATAC	1 cut(s)	827
Bst2BI	CACGAG	2 cut(s)	417, 1136
Bst2UI	CCWGG	3 cut(s)	288, 1362, 1406
Bst4CI	ACNGT	4 cut(s)	252, 489, 771, 801
BstC8I	GCNNGC	5 cut(s)	414, 615, 619, 1023, 1227
BstDEI	CTNAG	4 cut(s)	437, 667, 923, 1472
BstDSI	CCRYGG	1 cut(s)	1070
BstF5I	GGATG	6 cut(s)	161, 202, 362, 937, 1150, 1356
BstKTI	GATC	4 cut(s)	302, 841, 1290, 1439
BstMAI	GTCTC	2 cut(s)	176, 363
BstMBI	GATC	4 cut(s)	299, 838, 1287, 1436
BstMWI	GCNNNNNNNGC	3 cut(s)	106, 334, 730
BstNI	CCWGG	3 cut(s)	288, 1362, 1406
BstNSI	RCATGY	4 cut(s)	216, 621, 722, 825
BstSCI	CCNGG	3 cut(s)	286, 1360, 1404
BstV1I	GCAGC	6 cut(s)	372, 484, 633, 1209, 1276, 1290
BstV2I	GAAGAC	1 cut(s)	1216
BstX2I	RGATCY	2 cut(s)	1287, 1436
BstYI	RGATCY	2 cut(s)	1287, 1436
BstZ17I	GTATAC	1 cut(s)	827
BsuRI	GGCC	1 cut(s)	684
BtgI	CCRYGG	1 cut(s)	1070
BtsCI	GGATG	6 cut(s)	161, 202, 362, 937, 1150, 1356
BtsIMutI	CAGTG	2 cut(s)	485, 1244
Cac8I	GCNNGC	5 cut(s)	414, 615, 619, 1023, 1227
Cfr13I	GGNCC	1 cut(s)	1011
Csp6I	GTAC	3 cut(s)	403, 787, 1276
CspCI	CAANNNNNGTGG	2 cut(s)	1218, 1253
CviQI	GTAC	3 cut(s)	403, 787, 1276
DdeI	CTNAG	4 cut(s)	437, 667, 923, 1472
DpnI	GATC	4 cut(s)	301, 840, 1289, 1438
DpnII	GATC	4 cut(s)	299, 838, 1287, 1436
DraI	TTTAAA	1 cut(s)	960
Ecl136II	GAGCTC	1 cut(s)	422
Eco130I	CCWWGG	1 cut(s)	1070
Eco147I	AGGCCT	1 cut(s)	684
Eco24I	GRGCYC	1 cut(s)	424
Eco47I	GGWCC	1 cut(s)	1011
Eco53kI	GAGCTC	1 cut(s)	422
Eco88I	CYCGRG	1 cut(s)	303
EcoICRI	GAGCTC	1 cut(s)	422
EcoO109I	RGGNCCY	1 cut(s)	1011
EcoRII	CCWGG	3 cut(s)	286, 1360, 1404
EcoT14I	CCWWGG	1 cut(s)	1070
EcoT22I	ATGCAT	1 cut(s)	549
EcoT38I	GRGCYC	1 cut(s)	424
ErhI	CCWWGG	1 cut(s)	1070
FauNDI	CATATG	1 cut(s)	365
FblI	GTMKAC	2 cut(s)	444, 826
Fnu4HI	GCNGC	7 cut(s)	361, 473, 622, 1054, 1223, 1265, 1304
FokI	GGATG	6 cut(s)	168, 209, 369, 944, 1157, 1363
FriOI	GRGCYC	1 cut(s)	424
Fsp4HI	GCNGC	7 cut(s)	361, 473, 622, 1054, 1223, 1265, 1304
FspBI	CTAG	4 cut(s)	314, 353, 1219, 1285
GluI	GCNGC	7 cut(s)	361, 473, 622, 1054, 1223, 1265, 1304
GsuI	CTGGAG	1 cut(s)	656
HaeIII	GGCC	1 cut(s)	684
HapII	CCGG	2 cut(s)	130, 1142
HincII	GTYRAC	2 cut(s)	819, 1125
HindII	GTYRAC	2 cut(s)	819, 1125
HindIII	AAGCTT	1 cut(s)	29
HinfI	GANTC	6 cut(s)	238, 583, 750, 879, 1075, 1212
HpaII	CCGG	2 cut(s)	130, 1142
Hpy166II	GTNNAC	6 cut(s)	229, 445, 453, 819, 827, 1125
Hpy188I	TCNGA	5 cut(s)	649, 675, 931, 1080, 1412
Hpy188III	TCNNGA	5 cut(s)	538, 739, 883, 949, 1173
Hpy8I	GTNNAC	6 cut(s)	229, 445, 453, 819, 827, 1125
HpyAV	CCTTC	3 cut(s)	134, 1042, 1301
HpyCH4III	ACNGT	4 cut(s)	252, 489, 771, 801
HpyF10VI	GCNNNNNNNGC	3 cut(s)	106, 334, 730
HpyF3I	CTNAG	4 cut(s)	437, 667, 923, 1472
Kzo9I	GATC	4 cut(s)	299, 838, 1287, 1436
LmnI	GCTCC	2 cut(s)	205, 715
Lsp1109I	GCAGC	6 cut(s)	372, 484, 633, 1209, 1276, 1290
LweI	GCATC	7 cut(s)	187, 315, 347, 534, 742, 1135, 1367
MaeI	CTAG	4 cut(s)	314, 353, 1219, 1285
MaeIII	GTNAC	5 cut(s)	208, 259, 795, 996, 1313
MalI	GATC	4 cut(s)	301, 840, 1289, 1438
MboI	GATC	4 cut(s)	299, 838, 1287, 1436
MboII	GAAGA	5 cut(s)	669, 1057, 1221, 1328, 1468
MfeI	CAATTG	1 cut(s)	1057
MflI	RGATCY	2 cut(s)	1287, 1436
MhlI	GDGCHC	2 cut(s)	69, 424
MluCI	AATT	6 cut(s)	186, 677, 710, 755, 1057, 1296
MlyI	GAGTC	2 cut(s)	247, 1206
MmeI	TCCRAC	2 cut(s)	300, 451
MnlI	CCTC	4 cut(s)	933, 1155, 1361, 1469
Mph1103I	ATGCAT	1 cut(s)	549
MseI	TTAA	3 cut(s)	44, 700, 959
MslI	CAYNNNNRTG	1 cut(s)	1201
MspI	CCGG	2 cut(s)	130, 1142
MspR9I	CCNGG	3 cut(s)	288, 1362, 1406
MunI	CAATTG	1 cut(s)	1057
Mva1269I	GAATGC	2 cut(s)	297, 603
MvaI	CCWGG	3 cut(s)	288, 1362, 1406
MwoI	GCNNNNNNNGC	3 cut(s)	106, 334, 730
NcoI	CCATGG	1 cut(s)	1070
NdeI	CATATG	1 cut(s)	365
NdeII	GATC	4 cut(s)	299, 838, 1287, 1436
NlaIV	GGNNCC	2 cut(s)	1012, 1438
NmuCI	GTSAC	2 cut(s)	208, 259
NsiI	ATGCAT	1 cut(s)	549
NspI	RCATGY	4 cut(s)	216, 621, 722, 825
PaeI	GCATGC	1 cut(s)	621
PceI	AGGCCT	1 cut(s)	684
PciI	ACATGT	2 cut(s)	212, 821
PctI	GAATGC	2 cut(s)	297, 603
PfeI	GAWTC	4 cut(s)	583, 750, 879, 1075
PfoI	TCCNGGA	1 cut(s)	286
PkrI	GCNGC	7 cut(s)	362, 474, 623, 1055, 1224, 1266, 1305
PleI	GAGTC	2 cut(s)	246, 1206
PpsI	GAGTC	2 cut(s)	246, 1206
PpuMI	RGGWCCY	1 cut(s)	1011
PscI	ACATGT	2 cut(s)	212, 821
Psp124BI	GAGCTC	1 cut(s)	424
Psp5II	RGGWCCY	1 cut(s)	1011
Psp6I	CCWGG	3 cut(s)	286, 1360, 1404
PspGI	CCWGG	3 cut(s)	286, 1360, 1404
PspN4I	GGNNCC	2 cut(s)	1012, 1438
PspPI	GGNCC	1 cut(s)	1011
PspPPI	RGGWCCY	1 cut(s)	1011
PsrI	GAACNNNNNNTAC	2 cut(s)	1385, 1417
PsuI	RGATCY	2 cut(s)	1287, 1436
RsaI	GTAC	3 cut(s)	404, 788, 1277
RsaNI	GTAC	3 cut(s)	403, 787, 1276
RseI	CAYNNNNRTG	1 cut(s)	1201
SacI	GAGCTC	1 cut(s)	424
SaqAI	TTAA	3 cut(s)	44, 700, 959
SatI	GCNGC	7 cut(s)	361, 473, 622, 1054, 1223, 1265, 1304
Sau3AI	GATC	4 cut(s)	299, 838, 1287, 1436
Sau96I	GGNCC	1 cut(s)	1011
SchI	GAGTC	2 cut(s)	247, 1206
ScrFI	CCNGG	3 cut(s)	288, 1362, 1406
SduI	GDGCHC	2 cut(s)	69, 424
SfaNI	GCATC	7 cut(s)	187, 315, 347, 534, 742, 1135, 1367
SinI	GGWCC	1 cut(s)	1011
SmiMI	CAYNNNNRTG	1 cut(s)	1201
SmlI	CTYRAG	1 cut(s)	949
SmoI	CTYRAG	1 cut(s)	949
SphI	GCATGC	1 cut(s)	621
Sse9I	AATT	6 cut(s)	186, 677, 710, 755, 1057, 1296
SseBI	AGGCCT	1 cut(s)	684
SsiI	CCGC	4 cut(s)	116, 337, 1053, 1159
SspMI	CTAG	4 cut(s)	314, 353, 1219, 1285
SstI	GAGCTC	1 cut(s)	424
StuI	AGGCCT	1 cut(s)	684
StyD4I	CCNGG	3 cut(s)	286, 1360, 1404
StyI	CCWWGG	1 cut(s)	1070
TaaI	ACNGT	4 cut(s)	252, 489, 771, 801
TaqI	TCGA	1 cut(s)	539
TaqII	GACCGA	1 cut(s)	284
TasI	AATT	6 cut(s)	186, 677, 710, 755, 1057, 1296
TatI	WGTACW	3 cut(s)	402, 786, 1275
TauI	GCSGC	1 cut(s)	1056
TfiI	GAWTC	4 cut(s)	583, 750, 879, 1075
Tru1I	TTAA	3 cut(s)	44, 700, 959
Tru9I	TTAA	3 cut(s)	44, 700, 959
TscAI	CASTG	2 cut(s)	492, 1251
TseFI	GTSAC	2 cut(s)	208, 259
TseI	GCWGC	6 cut(s)	360, 472, 621, 1222, 1264, 1303
Tsp45I	GTSAC	2 cut(s)	208, 259
TspDTI	ATGAA	8 cut(s)	347, 398, 748, 982, 1007, 1158, 1169, 1367
TspRI	CASTG	2 cut(s)	492, 1251
VpaK11BI	GGWCC	1 cut(s)	1011
XapI	RAATTY	1 cut(s)	755
XceI	RCATGY	4 cut(s)	216, 621, 722, 825
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1412
XmiI	GTMKAC	2 cut(s)	444, 826
XspI	CTAG	4 cut(s)	314, 353, 1219, 1285
Zsp2I	ATGCAT	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.