Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0014545

Physical Location & Seq

Genomic Coordinates Reverse (-)

35011835 .. 35014107

Gene Structure 2273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00412440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2157 bp

ATGAAAATATTCAAAGCCTCAAAACCATTGACCTTCAACTACAGTCAGCCACCTTCAACCCTTTTACCCCACTTCAAAAACGAACTCTTTGGCAATGACTACATAACCTCCTTGTGTAGACAGAAGCTTTACAGAGAAGCCCTTCAAGCATTTGACTTTCTAGACAAGAACACCAATTTCAAAGTGTTTCCCAGCACTTATGCTAATTTGGTTTCCGCTTGCTCATCTTTAAGGTCTATTGAACATGGTAGGAGAATCCATGATCATATTTTGGGGTCCAATCGTGAGCAAGACGTTGTTCTTCAGAATCACATTCTTAACATGTATGGGAAATGTGGGTCGTTTTGGGATGCAAGGAAGGTATTTGATGAAATGCCTGAGAGAAATGTGGTGTCTTGGACTTCACTGATTGCTGGGTATTCACAGAATAGGCAAGAGGTTAAAGCAGTTGAGTTGTATTTCCAAATGCTTCGATCGGGTTGTAGGCCTGATCAGTTTACTTTCGGAAGCGTAGTGAAAGCGTGTTCGGGTTTGGGGAATGTTTGGTTGGGGAGACAACTCCACGCCCACGTTGTGAAATCAGAAACTGCTTCAGACCCTATTGCACAGAATGCACTTACTTCAATGTACACAAAGTTTGGTCTAATTGCAGATGCATTTGATGTGTTTACGCGTGTTGGGCCAAAGGATTTGATTTCTTGGGGTTCAATCATTTCAGGGTTTTCGCAACTTGGTTATGACAAAGAAGCTTTGGCTCATTTCAAGGAAATGCTGTGTCAGGGGAGAGACAATTTTGCTGGATGCTCCCTTTGTGACATGTATGCAAAATGTGGGCATTTAGGATCTGCAAGAACTGTATTTTGTCACATAGACCGACCTGATTTGGTGTCGTGGAATGCAATGATCTCGGGGTGTTCTAGTGTTGGAGATGCCAATGAAGCCGTATCATTCTTTTCTCGGATGCAGCATATGAGACTGATCCCCGATGAAGTCAGTGTTCTCTCTGTACTTTCTGCTTGCACGAGCTCTCCAACACTTTCTCAGGGCAGACAGGTTCACTCCTACATTATCAAGACAGCTTTTGATTTCACTGTAGCTGTGTGTAATGCTTTGCTAACAATGTATGCAAAGTGTTCAAATCTTGATGATGCATTTGTTGTGTTTGAAAATATGAGAAATCATACTGATTCAGTTTCTTGGAATGCCGTTATTACCGCGTGCATGCAGCACAACCAAGCTGGAGAAGTTTTCAGATTATTGAAGATAATGCTTAGTTCTGAAATTAGGCTTGATTATATTACTTTAAGTAATGTAATTGGAGCATGTGCAGATATAGCATCTCTGGAAGTTGGGAATCAAATTCATTGCCTTACTGTGAAAAGTGGGTTTGTACTTGGTGTTACTGTCAGCAATGGATTGGTTGACATGTATACAAAGTGTGGATCACTTGAAAGTGCCAGAAAGCTCTTTAGTTTGATGGAGAATCCAGATGTTGTGTCATGGAGTAGTTTAATTATGGGTTATGCTCAGTTCGGATGTGGAGAGGAAGCTCTTGAGCTGTTTAAAACAATGAAAGCATTGGGTGTAAAACCAAATGAAGTTACAATGGTGGGGGTCCTTACAGCTTGCAGTCATATTGGACTGGTTGAAGAAGGGCGGCAATTGTATAAAACCATGGAATCTGAACATGGCATTGTGCCGACAAGAGAGCATTGTTCTTGTATGGTTGACTTACTTGCTCGTGCAGGATGCTTACATGAAGCGGAGGAGTTCATCAAGAAAATGACATTTGAACCCGACATTGTGGTGTGGAAGACTCTACTAGCTGCCTGCAAAACCTGTGGGAACACTGAAATAGGAAAACAGGCTGCAGAGAATGTACTAAAACTAGATCCTTCCAATTCTGCTGCACTTGTGTTACTTTGCAACATCAATGCTTCTTCTGGCAGATGGGATGAAGTTGCCAGGTTGAGGAATATGATGCGAGAAAGTGGCGTAAAGAAGGTTCCAGGTCAGAGCTGGATTGAAGTCAAGGATAGGATCCATGTATTTTTAGTTGAAGATAGTTCGCACCCTGAGAGGGGTCGAATATATGCAATGCTAGAGGAGTTGTGGTTGCAGATGTTGGATGATGGTTGTGATCCACTTCAGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

718

Amino Acids

79.88

Weight (kDa)

6.25

Isoelectric Point (pI)

40.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	128 - 175	6e-11	PPR repeat family
PPR	PF01535	131 - 161	1.4e-06	PPR repeat
PPR_2	PF13041	293 - 340	1.8e-08	PPR repeat family
PPR	PF01535	296 - 324	1.2e-06	PPR repeat
PPR_2	PF13041	396 - 443	1.1e-06	PPR repeat family
PPR_2	PF13041	496 - 544	4.4e-11	PPR repeat family
PPR	PF01535	499 - 529	4.5e-08	PPR repeat
E_motif	PF20431	616 - 676	1.4e-18	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0014545)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53360 AT3G53360
fragaria_vesca	FvH4_6g15460
malus_domestica	MD04G1103100.v1.1 MD12G1123300.v1.1
prunus_persica	Prupe.6G239900_v2.0.a1
pyrus_communis	pycom04g09820 pycom12g12200
rosa_chinensis	RchiOBHm_Chr3g0468941
rosa_laevigata	RLG00000024398
rosa_multiflora	Rmu_co8434945.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412440
rosa_rugosa	Rorug03G0097700
rosa_samantha	Rh3AG147500 Rh3BG170100 Rh3DG205100
rosa_wichuraiana	Rw3G013870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	118, 1430
AccII	CGCG	2 cut(s)	673, 1217
AciI	CCGC	4 cut(s)	216, 1215, 1657, 1763
AclWI	GGATC	7 cut(s)	850, 973, 1450, 1886, 2035, 2048, 2135
AcsI	RAATTY	1 cut(s)	1359
AcuI	CTGAAG	3 cut(s)	287, 576, 2132
AdeI	CACNNNGTG	1 cut(s)	574
AfaI	GTAC	4 cut(s)	629, 1008, 1392, 1881
AfiI	CCNNNNNNNGG	3 cut(s)	1971, 2080, 2081
AflIII	ACRYGT	4 cut(s)	321, 671, 816, 1425
AjnI	CCWGG	2 cut(s)	1964, 2008
AjuI	GAANNNNNNNTTGG	2 cut(s)	530, 562
Alw21I	GWGCWC	1 cut(s)	1028
Alw26I	GTCTC	3 cut(s)	547, 780, 967
AlwI	GGATC	7 cut(s)	850, 973, 1450, 1886, 2035, 2048, 2135
AlwNI	CAGNNNCTG	1 cut(s)	587
Ama87I	CYCGRG	1 cut(s)	907
AoxI	GGCC	2 cut(s)	485, 680
ApeKI	GCWGC	5 cut(s)	964, 1225, 1826, 1868, 1907
ApoI	RAATTY	1 cut(s)	1359
Asp700I	GAANNNNTTC	2 cut(s)	8, 141
AspS9I	GGNCC	3 cut(s)	276, 680, 1615
AvaI	CYCGRG	1 cut(s)	907
AvaII	GGWCC	2 cut(s)	276, 1615
BamHI	GGATCC	1 cut(s)	2040
BanII	GRGCYC	1 cut(s)	1028
BauI	CACGAG	2 cut(s)	1021, 1740
BbsI	GAAGAC	1 cut(s)	1820
Bbv12I	GWGCWC	1 cut(s)	1028
BbvI	GCAGC	5 cut(s)	976, 1237, 1813, 1855, 1894
BccI	CCATC	3 cut(s)	1471, 1944, 2126
BceAI	ACGGC	2 cut(s)	926, 1190
BcgI	CGANNNNNNTGC	2 cut(s)	888, 922
BciT130I	CCWGG	2 cut(s)	1966, 2010
BclI	TGATCA	2 cut(s)	262, 490
BcoDI	GTCTC	3 cut(s)	547, 780, 967
BfaI	CTAG	5 cut(s)	161, 918, 1823, 1889, 2102
BfmI	CTRYAG	3 cut(s)	40, 1092, 1869
BisI	GCNGC	6 cut(s)	965, 1226, 1658, 1827, 1869, 1908
BlsI	GCNGC	6 cut(s)	966, 1227, 1659, 1828, 1870, 1909
Bme1390I	CCNGG	2 cut(s)	1966, 2010
Bme18I	GGWCC	2 cut(s)	276, 1615
BmeT110I	CYCGRG	1 cut(s)	907
BmgT120I	GGNCC	3 cut(s)	276, 680, 1615
BmiI	GGNNCC	4 cut(s)	277, 1616, 2007, 2042
BmrFI	CCNGG	2 cut(s)	1966, 2010
BmsI	GCATC	9 cut(s)	340, 643, 791, 919, 951, 1138, 1346, 1739, 1971
BpiI	GAAGAC	1 cut(s)	1820
BpmI	CTGGAG	1 cut(s)	1260
BpuEI	CTTGAG	1 cut(s)	1574
BsaJI	CCNNGG	1 cut(s)	1674
BsaXI	ACNNNNNCTCC	6 cut(s)	92, 122, 1012, 1042, 2099, 2129
Bsc4I	CCNNNNNNNGG	3 cut(s)	1971, 2080, 2081
Bse1I	ACTGG	1 cut(s)	1647
Bse3DI	GCAATG	5 cut(s)	100, 906, 1363, 1417, 2103
BseBI	CCWGG	2 cut(s)	1966, 2010
BseDI	CCNNGG	1 cut(s)	1674
BseGI	GGATG	7 cut(s)	355, 806, 966, 1541, 1754, 1960, 2134
BseLI	CCNNNNNNNGG	3 cut(s)	1971, 2080, 2081
BseMI	GCAATG	5 cut(s)	100, 906, 1363, 1417, 2103
BseMII	CTCAG	4 cut(s)	369, 1055, 1541, 2067
BseNI	ACTGG	1 cut(s)	1647
BseRI	GAGGAG	2 cut(s)	1781, 2120
BseXI	GCAGC	5 cut(s)	976, 1237, 1813, 1855, 1894
BseYI	CCCAGC	2 cut(s)	191, 413
BsgI	GTGCAG	3 cut(s)	1347, 1764, 1893
Bsh1236I	CGCG	2 cut(s)	673, 1217
Bsh1285I	CGRYCG	1 cut(s)	476
BshFI	GGCC	2 cut(s)	487, 682
BsiEI	CGRYCG	1 cut(s)	476
BsiHKAI	GWGCWC	1 cut(s)	1028
BsiHKCI	CYCGRG	1 cut(s)	907
BslI	CCNNNNNNNGG	3 cut(s)	1971, 2080, 2081
BsmAI	GTCTC	3 cut(s)	547, 780, 967
BsmI	GAATGC	3 cut(s)	616, 901, 1207
BsnI	GGCC	2 cut(s)	487, 682
BsoBI	CYCGRG	1 cut(s)	907
Bsp1286I	GDGCHC	1 cut(s)	1028
Bsp1407I	TGTACA	1 cut(s)	627
Bsp19I	CCATGG	1 cut(s)	1674
BspACI	CCGC	4 cut(s)	216, 1215, 1657, 1763
BspANI	GGCC	2 cut(s)	487, 682
BspCNI	CTCAG	4 cut(s)	370, 1054, 1540, 2068
BspFNI	CGCG	2 cut(s)	673, 1217
BspLI	GGNNCC	4 cut(s)	277, 1616, 2007, 2042
BspMAI	CTGCAG	1 cut(s)	1873
BspPI	GGATC	7 cut(s)	850, 973, 1450, 1886, 2035, 2048, 2135
BsrDI	GCAATG	5 cut(s)	100, 906, 1363, 1417, 2103
BsrGI	TGTACA	1 cut(s)	627
BsrI	ACTGG	1 cut(s)	1647
BssECI	CCNNGG	1 cut(s)	1674
BssNAI	GTATAC	1 cut(s)	1431
BssSI	CACGAG	2 cut(s)	1021, 1740
BssT1I	CCWWGG	1 cut(s)	1674
Bst1107I	GTATAC	1 cut(s)	1431
Bst2BI	CACGAG	2 cut(s)	1021, 1740
Bst2UI	CCWGG	2 cut(s)	1966, 2010
Bst4CI	ACNGT	5 cut(s)	44, 856, 1093, 1375, 1405
BstAPI	GCANNNNNTGC	1 cut(s)	611
BstAUI	TGTACA	1 cut(s)	627
BstC8I	GCNNGC	6 cut(s)	220, 1018, 1219, 1223, 1627, 1831
BstDEI	CTNAG	5 cut(s)	378, 1041, 1271, 1527, 2076
BstDSI	CCRYGG	1 cut(s)	1674
BstF5I	GGATG	7 cut(s)	355, 806, 966, 1541, 1754, 1960, 2134
BstFNI	CGCG	2 cut(s)	673, 1217
BstMAI	GTCTC	3 cut(s)	547, 780, 967
BstMCI	CGRYCG	1 cut(s)	476
BstMWI	GCNNNNNNNGC	5 cut(s)	146, 611, 679, 938, 1334
BstNI	CCWGG	2 cut(s)	1966, 2010
BstNSI	RCATGY	5 cut(s)	325, 820, 1225, 1326, 1429
BstSCI	CCNGG	2 cut(s)	1964, 2008
BstSFI	CTRYAG	3 cut(s)	40, 1092, 1869
BstUI	CGCG	2 cut(s)	673, 1217
BstV1I	GCAGC	5 cut(s)	976, 1237, 1813, 1855, 1894
BstV2I	GAAGAC	1 cut(s)	1820
BstX2I	RGATCY	3 cut(s)	842, 1891, 2040
BstYI	RGATCY	3 cut(s)	842, 1891, 2040
BstZ17I	GTATAC	1 cut(s)	1431
BsuRI	GGCC	2 cut(s)	487, 682
BtgI	CCRYGG	1 cut(s)	1674
BtsCI	GGATG	7 cut(s)	355, 806, 966, 1541, 1754, 1960, 2134
BtsIMutI	CAGTG	4 cut(s)	404, 1000, 1089, 1848
Cac8I	GCNNGC	6 cut(s)	220, 1018, 1219, 1223, 1627, 1831
CaiI	CAGNNNCTG	1 cut(s)	587
Cfr13I	GGNCC	3 cut(s)	276, 680, 1615
Csp6I	GTAC	4 cut(s)	628, 1007, 1391, 1880
CspCI	CAANNNNNGTGG	2 cut(s)	1822, 1857
CviQI	GTAC	4 cut(s)	628, 1007, 1391, 1880
DdeI	CTNAG	5 cut(s)	378, 1041, 1271, 1527, 2076
DraI	TTTAAA	1 cut(s)	1564
DraIII	CACNNNGTG	1 cut(s)	574
Ecl136II	GAGCTC	1 cut(s)	1026
Eco130I	CCWWGG	1 cut(s)	1674
Eco147I	AGGCCT	1 cut(s)	487
Eco24I	GRGCYC	1 cut(s)	1028
Eco47I	GGWCC	2 cut(s)	276, 1615
Eco53kI	GAGCTC	1 cut(s)	1026
Eco57I	CTGAAG	3 cut(s)	287, 576, 2132
Eco88I	CYCGRG	1 cut(s)	907
EcoICRI	GAGCTC	1 cut(s)	1026
EcoO109I	RGGNCCY	1 cut(s)	1615
EcoRII	CCWGG	2 cut(s)	1964, 2008
EcoT14I	CCWWGG	1 cut(s)	1674
EcoT22I	ATGCAT	2 cut(s)	658, 1153
EcoT38I	GRGCYC	1 cut(s)	1028
ErhI	CCWWGG	1 cut(s)	1674
FauNDI	CATATG	1 cut(s)	969
FbaI	TGATCA	2 cut(s)	262, 490
FblI	GTMKAC	2 cut(s)	118, 1430
Fnu4HI	GCNGC	6 cut(s)	965, 1226, 1658, 1827, 1869, 1908
FokI	GGATG	7 cut(s)	362, 813, 973, 1548, 1761, 1967, 2141
FriOI	GRGCYC	1 cut(s)	1028
Fsp4HI	GCNGC	6 cut(s)	965, 1226, 1658, 1827, 1869, 1908
FspBI	CTAG	5 cut(s)	161, 918, 1823, 1889, 2102
GluI	GCNGC	6 cut(s)	965, 1226, 1658, 1827, 1869, 1908
GsaI	CCCAGC	2 cut(s)	195, 417
GsuI	CTGGAG	1 cut(s)	1260
HaeIII	GGCC	2 cut(s)	487, 682
HincII	GTYRAC	2 cut(s)	1423, 1729
HindII	GTYRAC	2 cut(s)	1423, 1729
HindIII	AAGCTT	2 cut(s)	125, 747
HinfI	GANTC	7 cut(s)	255, 307, 1187, 1354, 1483, 1679, 1816
Hpy166II	GTNNAC	8 cut(s)	119, 498, 630, 669, 1057, 1423, 1431, 1729
Hpy188III	TCNNGA	8 cut(s)	161, 284, 1072, 1142, 1343, 1487, 1553, 1777
Hpy8I	GTNNAC	8 cut(s)	119, 498, 630, 669, 1057, 1423, 1431, 1729
HpyAV	CCTTC	7 cut(s)	43, 63, 152, 352, 1646, 1905, 1996
HpyCH4III	ACNGT	5 cut(s)	44, 856, 1093, 1375, 1405
HpyCH4IV	ACGT	2 cut(s)	294, 570
HpyF10VI	GCNNNNNNNGC	5 cut(s)	146, 611, 679, 938, 1334
HpyF3I	CTNAG	5 cut(s)	378, 1041, 1271, 1527, 2076
HpySE526I	ACGT	2 cut(s)	294, 570
Ksp22I	TGATCA	2 cut(s)	262, 490
LmnI	GCTCC	2 cut(s)	809, 1319
Lsp1109I	GCAGC	5 cut(s)	976, 1237, 1813, 1855, 1894
LweI	GCATC	9 cut(s)	340, 643, 791, 919, 951, 1138, 1346, 1739, 1971
MaeI	CTAG	5 cut(s)	161, 918, 1823, 1889, 2102
MaeII	ACGT	2 cut(s)	294, 570
MaeIII	GTNAC	5 cut(s)	812, 863, 1399, 1600, 1917
MboII	GAAGA	6 cut(s)	293, 1273, 1661, 1825, 1932, 2072
MfeI	CAATTG	1 cut(s)	1661
MflI	RGATCY	3 cut(s)	842, 1891, 2040
MhlI	GDGCHC	1 cut(s)	1028
MluI	ACGCGT	1 cut(s)	671
MlyI	GAGTC	1 cut(s)	1810
MmeI	TCCRAC	3 cut(s)	904, 1055, 2106
MnlI	CCTC	8 cut(s)	28, 118, 430, 1537, 1759, 1965, 2073, 2098
Mph1103I	ATGCAT	2 cut(s)	658, 1153
MroXI	GAANNNNTTC	2 cut(s)	8, 141
MseI	TTAA	6 cut(s)	230, 318, 441, 1304, 1511, 1563
MslI	CAYNNNNRTG	1 cut(s)	1805
MspR9I	CCNGG	2 cut(s)	1966, 2010
MunI	CAATTG	1 cut(s)	1661
Mva1269I	GAATGC	3 cut(s)	616, 901, 1207
MvaI	CCWGG	2 cut(s)	1966, 2010
MvnI	CGCG	2 cut(s)	673, 1217
MwoI	GCNNNNNNNGC	5 cut(s)	146, 611, 679, 938, 1334
NcoI	CCATGG	1 cut(s)	1674
NdeI	CATATG	1 cut(s)	969
NlaIV	GGNNCC	4 cut(s)	277, 1616, 2007, 2042
NmuCI	GTSAC	2 cut(s)	812, 863
NsiI	ATGCAT	2 cut(s)	658, 1153
NspI	RCATGY	5 cut(s)	325, 820, 1225, 1326, 1429
PaeI	GCATGC	1 cut(s)	1225
PceI	AGGCCT	1 cut(s)	487
PciI	ACATGT	3 cut(s)	321, 816, 1425
PctI	GAATGC	3 cut(s)	616, 901, 1207
PdmI	GAANNNNTTC	2 cut(s)	8, 141
PfeI	GAWTC	6 cut(s)	255, 307, 1187, 1354, 1483, 1679
PkrI	GCNGC	6 cut(s)	966, 1227, 1659, 1828, 1870, 1909
Ple19I	CGATCG	1 cut(s)	476
PleI	GAGTC	1 cut(s)	1810
PpsI	GAGTC	1 cut(s)	1810
PpuMI	RGGWCCY	1 cut(s)	1615
PscI	ACATGT	3 cut(s)	321, 816, 1425
Psp124BI	GAGCTC	1 cut(s)	1028
Psp5II	RGGWCCY	1 cut(s)	1615
Psp6I	CCWGG	2 cut(s)	1964, 2008
PspFI	CCCAGC	2 cut(s)	191, 413
PspGI	CCWGG	2 cut(s)	1964, 2008
PspN4I	GGNNCC	4 cut(s)	277, 1616, 2007, 2042
PspPI	GGNCC	3 cut(s)	276, 680, 1615
PspPPI	RGGWCCY	1 cut(s)	1615
PsrI	GAACNNNNNNTAC	2 cut(s)	1989, 2021
PstI	CTGCAG	1 cut(s)	1873
PstNI	CAGNNNCTG	1 cut(s)	587
PsuI	RGATCY	3 cut(s)	842, 1891, 2040
PvuI	CGATCG	1 cut(s)	476
RsaI	GTAC	4 cut(s)	629, 1008, 1392, 1881
RsaNI	GTAC	4 cut(s)	628, 1007, 1391, 1880
RseI	CAYNNNNRTG	1 cut(s)	1805
SacI	GAGCTC	1 cut(s)	1028
SaqAI	TTAA	6 cut(s)	230, 318, 441, 1304, 1511, 1563
SatI	GCNGC	6 cut(s)	965, 1226, 1658, 1827, 1869, 1908
Sau96I	GGNCC	3 cut(s)	276, 680, 1615
SchI	GAGTC	1 cut(s)	1810
ScrFI	CCNGG	2 cut(s)	1966, 2010
SduI	GDGCHC	1 cut(s)	1028
SfaNI	GCATC	9 cut(s)	340, 643, 791, 919, 951, 1138, 1346, 1739, 1971
SfcI	CTRYAG	3 cut(s)	40, 1092, 1869
SinI	GGWCC	2 cut(s)	276, 1615
SmiMI	CAYNNNNRTG	1 cut(s)	1805
SmlI	CTYRAG	1 cut(s)	1553
SmoI	CTYRAG	1 cut(s)	1553
SphI	GCATGC	1 cut(s)	1225
SseBI	AGGCCT	1 cut(s)	487
SsiI	CCGC	4 cut(s)	216, 1215, 1657, 1763
SspI	AATATT	1 cut(s)	9
SspMI	CTAG	5 cut(s)	161, 918, 1823, 1889, 2102
SstI	GAGCTC	1 cut(s)	1028
StuI	AGGCCT	1 cut(s)	487
StyD4I	CCNGG	2 cut(s)	1964, 2008
StyI	CCWWGG	1 cut(s)	1674
TaaI	ACNGT	5 cut(s)	44, 856, 1093, 1375, 1405
TaiI	ACGT	2 cut(s)	297, 573
TaqI	TCGA	2 cut(s)	472, 2086
TaqII	GACCGA	1 cut(s)	888
TatI	WGTACW	4 cut(s)	627, 1006, 1390, 1879
TauI	GCSGC	1 cut(s)	1660
TfiI	GAWTC	6 cut(s)	255, 307, 1187, 1354, 1483, 1679
Tru1I	TTAA	6 cut(s)	230, 318, 441, 1304, 1511, 1563
Tru9I	TTAA	6 cut(s)	230, 318, 441, 1304, 1511, 1563
TscAI	CASTG	4 cut(s)	411, 1000, 1096, 1855
TseFI	GTSAC	2 cut(s)	812, 863
TseI	GCWGC	5 cut(s)	964, 1225, 1826, 1868, 1907
Tsp45I	GTSAC	2 cut(s)	812, 863
TspRI	CASTG	4 cut(s)	411, 1000, 1096, 1855
VpaK11BI	GGWCC	2 cut(s)	276, 1615
XapI	RAATTY	1 cut(s)	1359
XbaI	TCTAGA	1 cut(s)	160
XceI	RCATGY	5 cut(s)	325, 820, 1225, 1326, 1429
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2016
XmiI	GTMKAC	2 cut(s)	118, 1430
XmnI	GAANNNNTTC	2 cut(s)	8, 141
XspI	CTAG	5 cut(s)	161, 918, 1823, 1889, 2102
Zsp2I	ATGCAT	2 cut(s)	658, 1153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.