Pentatricopeptide repeat-containing protein At3g53360
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G53360 AT3G53360 |
| fragaria_vesca | FvH4_6g15460 |
| malus_domestica | MD04G1103100.v1.1 MD12G1123300.v1.1 |
| prunus_persica | Prupe.6G239900_v2.0.a1 |
| pyrus_communis | pycom04g09820 pycom12g12200 |
| rosa_chinensis | RchiOBHm_Chr3g0468941 |
| rosa_laevigata | RLG00000024398 |
| rosa_multiflora | Rmu_co8434945.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00412440 |
| rosa_rugosa | Rorug03G0097700 |
| rosa_samantha | Rh3AG147500 Rh3BG170100 Rh3DG205100 |
| rosa_wichuraiana | Rw3G013870 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 538 |
| AccII | CGCG | 1 cut(s) | 49 |
| AciI | CCGC | 2 cut(s) | 210, 431 |
| AfaI | GTAC | 2 cut(s) | 5, 498 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 230 |
| AflIII | ACRYGT | 2 cut(s) | 47, 306 |
| AgsI | TTSAA | 3 cut(s) | 84, 221, 656 |
| AjnI | CCWGG | 1 cut(s) | 380 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 110, 142 |
| AluBI | AGCT | 5 cut(s) | 125, 516, 569, 633, 659 |
| AluI | AGCT | 5 cut(s) | 125, 516, 569, 633, 659 |
| Alw21I | GWGCWC | 2 cut(s) | 163, 518 |
| Alw26I | GTCTC | 2 cut(s) | 270, 457 |
| Ama87I | CYCGRG | 1 cut(s) | 397 |
| ApeKI | GCWGC | 3 cut(s) | 454, 566, 620 |
| AvaI | CYCGRG | 1 cut(s) | 397 |
| BanII | GRGCYC | 1 cut(s) | 518 |
| BauI | CACGAG | 1 cut(s) | 511 |
| Bbv12I | GWGCWC | 2 cut(s) | 163, 518 |
| BbvI | GCAGC | 3 cut(s) | 466, 578, 632 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 81, 115, 378, 412 |
| BciT130I | CCWGG | 1 cut(s) | 382 |
| BcoDI | GTCTC | 2 cut(s) | 270, 457 |
| BfaI | CTAG | 2 cut(s) | 408, 447 |
| BisI | GCNGC | 3 cut(s) | 455, 567, 621 |
| BlsI | GCNGC | 3 cut(s) | 456, 568, 622 |
| Bme1390I | CCNGG | 1 cut(s) | 382 |
| BmeT110I | CYCGRG | 1 cut(s) | 397 |
| BmrFI | CCNGG | 1 cut(s) | 382 |
| BmsI | GCATC | 4 cut(s) | 19, 281, 409, 441 |
| BpmI | CTGGAG | 1 cut(s) | 655 |
| BsaWI | WCCGGW | 1 cut(s) | 223 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 502, 532 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 230 |
| Bse3DI | GCAATG | 2 cut(s) | 87, 396 |
| BseBI | CCWGG | 1 cut(s) | 382 |
| BseGI | GGATG | 3 cut(s) | 255, 296, 456 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 230 |
| BseMI | GCAATG | 2 cut(s) | 87, 396 |
| BseMII | CTCAG | 1 cut(s) | 545 |
| BseXI | GCAGC | 3 cut(s) | 466, 578, 632 |
| Bsh1236I | CGCG | 1 cut(s) | 49 |
| BsiHKAI | GWGCWC | 2 cut(s) | 163, 518 |
| BsiHKCI | CYCGRG | 1 cut(s) | 397 |
| BsiSI | CCGG | 1 cut(s) | 224 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 230 |
| BsmAI | GTCTC | 2 cut(s) | 270, 457 |
| BsmI | GAATGC | 1 cut(s) | 391 |
| BsoBI | CYCGRG | 1 cut(s) | 397 |
| Bsp1286I | GDGCHC | 2 cut(s) | 163, 518 |
| Bsp1407I | TGTACA | 1 cut(s) | 3 |
| Bsp143I | GATC | 1 cut(s) | 393 |
| BspACI | CCGC | 2 cut(s) | 210, 431 |
| BspCNI | CTCAG | 1 cut(s) | 544 |
| BspFNI | CGCG | 1 cut(s) | 49 |
| BsrDI | GCAATG | 2 cut(s) | 87, 396 |
| BsrGI | TGTACA | 1 cut(s) | 3 |
| BssMI | GATC | 1 cut(s) | 393 |
| BssSI | CACGAG | 1 cut(s) | 511 |
| Bst2BI | CACGAG | 1 cut(s) | 511 |
| Bst2UI | CCWGG | 1 cut(s) | 382 |
| Bst4CI | ACNGT | 2 cut(s) | 346, 583 |
| BstAUI | TGTACA | 1 cut(s) | 3 |
| BstC8I | GCNNGC | 2 cut(s) | 508, 618 |
| BstDEI | CTNAG | 2 cut(s) | 531, 666 |
| BstF5I | GGATG | 3 cut(s) | 255, 296, 456 |
| BstFNI | CGCG | 1 cut(s) | 49 |
| BstKTI | GATC | 1 cut(s) | 396 |
| BstMAI | GTCTC | 2 cut(s) | 270, 457 |
| BstMBI | GATC | 1 cut(s) | 393 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 200, 428 |
| BstNI | CCWGG | 1 cut(s) | 382 |
| BstNSI | RCATGY | 2 cut(s) | 310, 620 |
| BstSCI | CCNGG | 1 cut(s) | 380 |
| BstUI | CGCG | 1 cut(s) | 49 |
| BstV1I | GCAGC | 3 cut(s) | 466, 578, 632 |
| BtgZI | GCGATG | 1 cut(s) | 71 |
| BtsCI | GGATG | 3 cut(s) | 255, 296, 456 |
| BtsIMutI | CAGTG | 1 cut(s) | 579 |
| Cac8I | GCNNGC | 2 cut(s) | 508, 618 |
| Csp6I | GTAC | 2 cut(s) | 4, 497 |
| CviAII | CATG | 3 cut(s) | 245, 307, 617 |
| CviJI | RGCY | 6 cut(s) | 125, 131, 516, 569, 633, 659 |
| CviKI_1 | RGCY | 6 cut(s) | 125, 131, 516, 569, 633, 659 |
| CviQI | GTAC | 2 cut(s) | 4, 497 |
| DdeI | CTNAG | 2 cut(s) | 531, 666 |
| DpnI | GATC | 1 cut(s) | 395 |
| DpnII | GATC | 1 cut(s) | 393 |
| Ecl136II | GAGCTC | 1 cut(s) | 516 |
| Eco24I | GRGCYC | 1 cut(s) | 518 |
| Eco53kI | GAGCTC | 1 cut(s) | 516 |
| Eco88I | CYCGRG | 1 cut(s) | 397 |
| EcoICRI | GAGCTC | 1 cut(s) | 516 |
| EcoRII | CCWGG | 1 cut(s) | 380 |
| EcoT22I | ATGCAT | 1 cut(s) | 34 |
| EcoT38I | GRGCYC | 1 cut(s) | 518 |
| FaeI | CATG | 3 cut(s) | 248, 310, 620 |
| FatI | CATG | 3 cut(s) | 244, 306, 616 |
| FauNDI | CATATG | 1 cut(s) | 459 |
| FblI | GTMKAC | 1 cut(s) | 538 |
| Fnu4HI | GCNGC | 3 cut(s) | 455, 567, 621 |
| FokI | GGATG | 3 cut(s) | 262, 303, 463 |
| FriOI | GRGCYC | 1 cut(s) | 518 |
| Fsp4HI | GCNGC | 3 cut(s) | 455, 567, 621 |
| FspBI | CTAG | 2 cut(s) | 408, 447 |
| GluI | GCNGC | 3 cut(s) | 455, 567, 621 |
| GsuI | CTGGAG | 1 cut(s) | 655 |
| HapII | CCGG | 1 cut(s) | 224 |
| Hin1II | CATG | 3 cut(s) | 248, 310, 620 |
| HindIII | AAGCTT | 1 cut(s) | 123 |
| HinfI | GANTC | 1 cut(s) | 332 |
| HpaII | CCGG | 1 cut(s) | 224 |
| Hpy166II | GTNNAC | 5 cut(s) | 6, 45, 323, 539, 547 |
| Hpy188I | TCNGA | 2 cut(s) | 21, 648 |
| Hpy8I | GTNNAC | 5 cut(s) | 6, 45, 323, 539, 547 |
| HpyAV | CCTTC | 2 cut(s) | 55, 228 |
| HpyCH4III | ACNGT | 2 cut(s) | 346, 583 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 200, 428 |
| HpyF3I | CTNAG | 2 cut(s) | 531, 666 |
| Hsp92II | CATG | 3 cut(s) | 248, 310, 620 |
| Kzo9I | GATC | 1 cut(s) | 393 |
| LmnI | GCTCC | 1 cut(s) | 299 |
| Lsp1109I | GCAGC | 3 cut(s) | 466, 578, 632 |
| LweI | GCATC | 4 cut(s) | 19, 281, 409, 441 |
| MaeI | CTAG | 2 cut(s) | 408, 447 |
| MaeIII | GTNAC | 2 cut(s) | 302, 353 |
| MalI | GATC | 1 cut(s) | 395 |
| MboI | GATC | 1 cut(s) | 393 |
| MhlI | GDGCHC | 2 cut(s) | 163, 518 |
| MluCI | AATT | 1 cut(s) | 280 |
| MluI | ACGCGT | 1 cut(s) | 47 |
| MlyI | GAGTC | 1 cut(s) | 341 |
| MmeI | TCCRAC | 2 cut(s) | 394, 545 |
| Mph1103I | ATGCAT | 1 cut(s) | 34 |
| MseI | TTAA | 1 cut(s) | 138 |
| MspI | CCGG | 1 cut(s) | 224 |
| MspR9I | CCNGG | 1 cut(s) | 382 |
| Mva1269I | GAATGC | 1 cut(s) | 391 |
| MvaI | CCWGG | 1 cut(s) | 382 |
| MvnI | CGCG | 1 cut(s) | 49 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 200, 428 |
| NdeI | CATATG | 1 cut(s) | 459 |
| NdeII | GATC | 1 cut(s) | 393 |
| NlaIII | CATG | 3 cut(s) | 248, 310, 620 |
| NmuCI | GTSAC | 2 cut(s) | 302, 353 |
| NsiI | ATGCAT | 1 cut(s) | 34 |
| NspI | RCATGY | 2 cut(s) | 310, 620 |
| PaeI | GCATGC | 1 cut(s) | 620 |
| PciI | ACATGT | 1 cut(s) | 306 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 53 |
| PctI | GAATGC | 1 cut(s) | 391 |
| PfoI | TCCNGGA | 1 cut(s) | 380 |
| PkrI | GCNGC | 3 cut(s) | 456, 568, 622 |
| PleI | GAGTC | 1 cut(s) | 340 |
| PpsI | GAGTC | 1 cut(s) | 340 |
| PscI | ACATGT | 1 cut(s) | 306 |
| Psp124BI | GAGCTC | 1 cut(s) | 518 |
| Psp6I | CCWGG | 1 cut(s) | 380 |
| PspGI | CCWGG | 1 cut(s) | 380 |
| RsaI | GTAC | 2 cut(s) | 5, 498 |
| RsaNI | GTAC | 2 cut(s) | 4, 497 |
| SacI | GAGCTC | 1 cut(s) | 518 |
| SaqAI | TTAA | 1 cut(s) | 138 |
| SatI | GCNGC | 3 cut(s) | 455, 567, 621 |
| Sau3AI | GATC | 1 cut(s) | 393 |
| SchI | GAGTC | 1 cut(s) | 341 |
| ScrFI | CCNGG | 1 cut(s) | 382 |
| SduI | GDGCHC | 2 cut(s) | 163, 518 |
| SetI | ASST | 7 cut(s) | 127, 370, 518, 546, 571, 635, 661 |
| SfaNI | GCATC | 4 cut(s) | 19, 281, 409, 441 |
| SphI | GCATGC | 1 cut(s) | 620 |
| Sse9I | AATT | 1 cut(s) | 280 |
| SsiI | CCGC | 2 cut(s) | 210, 431 |
| SspMI | CTAG | 2 cut(s) | 408, 447 |
| SstI | GAGCTC | 1 cut(s) | 518 |
| StyD4I | CCNGG | 1 cut(s) | 380 |
| TaaI | ACNGT | 2 cut(s) | 346, 583 |
| TaqII | GACCGA | 1 cut(s) | 378 |
| TasI | AATT | 1 cut(s) | 280 |
| TatI | WGTACW | 2 cut(s) | 3, 496 |
| Tru1I | TTAA | 1 cut(s) | 138 |
| Tru9I | TTAA | 1 cut(s) | 138 |
| TscAI | CASTG | 1 cut(s) | 586 |
| TseFI | GTSAC | 2 cut(s) | 302, 353 |
| TseI | GCWGC | 3 cut(s) | 454, 566, 620 |
| Tsp45I | GTSAC | 2 cut(s) | 302, 353 |
| TspDTI | ATGAA | 3 cut(s) | 74, 441, 492 |
| TspRI | CASTG | 1 cut(s) | 586 |
| XceI | RCATGY | 2 cut(s) | 310, 620 |
| XmiI | GTMKAC | 1 cut(s) | 538 |
| XspI | CTAG | 2 cut(s) | 408, 447 |
| Zsp2I | ATGCAT | 1 cut(s) | 34 |