Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0008293

Physical Location & Seq

Genomic Coordinates Reverse (-)

13476994 .. 13478125

Gene Structure 1132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g10750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGCGGATCGATCACGTGAAGGCTATTGTCATGCTTCCAGACAAGTTCGGCAATTCAGCATTGCATGTGGCCACCAGGAAAAAGCGAGTAGATAAATTTAATTTCTCATTACGCTTGCAGATAGTCAATGTGCTATTGTTCGTTCATGACACAAATGTGAATGTTCTAACAAGAGACCAGAAAACACCCCTTGATATAGCCGAAGGACTTCCATACTCTGAAGAAATCACAACAATTAAGGAAACCTTGACACAGTATGGCGCTGTCCGAGCAAATGAACTTAACCAGCCACGGGATGAGCTTAGAAACACCGTGACAGAGATTAAAAAAAATGTCCATAATCAGCTTGAACAAGCCCGCAAAACCAACCAGAGTGTTACTGGAATTGCCACGGAGCTCCGGAAGCTACAAAGGGAAGGAATCAATAATGCCACTAACTCAGTCACAGTGGTTGCTTCACTCTTTGCAACAGTAGCTTTTGCAGCTCTATTTACACTTCCTGGTGGTGATCTTGACTCCGGGGCAGCTGTTATGTCAATCCAAGTGTCATTTAAAATTTTCATCCTTTTCAATGCTGTTTCACTGTTCGCATCATTGGCTGTTGTTTTGGTACAAATCACCCTCGTCAGGGGGGAGACAAAGGCCGAGAGGAGGGTTGTGGAAGTGATCAATAAGTTGATGTGGCTGGCCTCTGTCTGCACTACAGTAGCATTTATTTCTTCATCATATATAGTGGTTGGGCGGCATAATGTGTGGGCTGCAATCCTTGTCACAGTTATAGGGGGACTTATAATGGGGGGAGTTATTGGTACCATGACATATTACGTGGTGAAGACCAAAAGGATTCATAGAGTGAGGAAGAGAGAGAAGATGTCGAGGATTGGAACCAACTATTCCCTGCGTCACTCAGAGTCCGATTCAGAAGTGAACCGTGTTTATGCCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04910 map04910

Pfam Domains

Protein Families

Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

316

Amino Acids

35.08

Weight (kDa)

9.96

Isoelectric Point (pI)

31.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PGG	PF13962	139 - 245	3.8e-25	Domain of unknown function
H_PPase	PF03030	151 - 293	7.2e-06	Inorganic H+ pyrophosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09550 AT3G09550 AT3G09550
fragaria_vesca	FvH4_6g14690
malus_domestica	MD04G1117500.v1.1 MD12G1133000.v1.1
prunus_persica	Prupe.6G247000_v2.0.a1 Prupe.6G247000_v2.0.a1 Prupe.6G247000_v2.0.a1 Prupe.6G247000_v2.0.a1 Prupe.6G247000_v2.0.a1 Prupe.6G247000_v2.0.a1 Prupe.6G247000_v2.0.a1
pyrus_communis	pycom04g10750 pycom12g12860
rosa_chinensis	RchiOBHm_Chr3g0467891
rosa_laevigata	RLG00000024470
rosa_roxburghii	Rroxscaffold_6G00413350
rosa_rugosa	Rorug03G0090200
rosa_samantha	Rh3AG138600 Rh3BG160100 Rh3CG160100 Rh3DG160700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	791
Acc65I	GGTACC	1 cut(s)	809
AccB1I	GGYRCC	1 cut(s)	809
AccIII	TCCGGA	1 cut(s)	399
AciI	CCGC	3 cut(s)	4, 358, 742
AclWI	GGATC	1 cut(s)	14
AcoI	YGGCCR	1 cut(s)	69
AcsI	RAATTY	2 cut(s)	95, 555
AcuI	CTGAAG	1 cut(s)	240
AcvI	CACGTG	1 cut(s)	16
AfaI	GTAC	2 cut(s)	612, 811
AfiI	CCNNNNNNNGG	4 cut(s)	292, 627, 628, 651
AgsI	TTSAA	2 cut(s)	350, 571
AjnI	CCWGG	2 cut(s)	74, 499
AleI	CACNNNNGTG	1 cut(s)	155
AluBI	AGCT	7 cut(s)	301, 346, 397, 406, 476, 485, 527
AluI	AGCT	7 cut(s)	301, 346, 397, 406, 476, 485, 527
Alw21I	GWGCWC	1 cut(s)	399
Alw26I	GTCTC	2 cut(s)	168, 629
AlwI	GGATC	1 cut(s)	14
Aor13HI	TCCGGA	1 cut(s)	399
AoxI	GGCC	3 cut(s)	69, 642, 687
ApeKI	GCWGC	3 cut(s)	482, 524, 758
ApoI	RAATTY	2 cut(s)	95, 555
Asp700I	GAANNNNTTC	1 cut(s)	207
Asp718I	GGTACC	1 cut(s)	809
AspLEI	GCGC	1 cut(s)	263
AsuC2I	CCSGG	1 cut(s)	520
AsuHPI	GGTGA	3 cut(s)	518, 610, 841
BalI	TGGCCA	1 cut(s)	71
BanI	GGYRCC	1 cut(s)	809
BanII	GRGCYC	1 cut(s)	399
BbrPI	CACGTG	1 cut(s)	16
BbsI	GAAGAC	1 cut(s)	839
Bbv12I	GWGCWC	1 cut(s)	399
BbvI	GCAGC	3 cut(s)	494, 536, 745
BciT130I	CCWGG	2 cut(s)	76, 501
BclI	TGATCA	1 cut(s)	666
BcnI	CCSGG	1 cut(s)	520
BcoDI	GTCTC	2 cut(s)	168, 629
BfmI	CTRYAG	1 cut(s)	702
BfoI	RGCGCY	1 cut(s)	264
BisI	GCNGC	4 cut(s)	483, 525, 743, 759
BlsI	GCNGC	4 cut(s)	484, 526, 744, 760
Bme1390I	CCNGG	3 cut(s)	76, 501, 520
BmiI	GGNNCC	2 cut(s)	811, 886
BmrFI	CCNGG	3 cut(s)	76, 501, 520
BmsI	GCATC	1 cut(s)	599
BpiI	GAAGAC	1 cut(s)	839
BpuMI	CCSGG	1 cut(s)	520
Bsa29I	ATCGAT	1 cut(s)	9
BsaAI	YACGTR	2 cut(s)	16, 826
BsaI	GGTCTC	1 cut(s)	168
BsaJI	CCNNGG	3 cut(s)	290, 390, 519
BsaWI	WCCGGW	1 cut(s)	399
Bsc4I	CCNNNNNNNGG	4 cut(s)	292, 627, 628, 651
Bse1I	ACTGG	1 cut(s)	385
Bse3DI	GCAATG	1 cut(s)	59
BseAI	TCCGGA	1 cut(s)	399
BseBI	CCWGG	2 cut(s)	76, 501
BseCI	ATCGAT	1 cut(s)	9
BseDI	CCNNGG	3 cut(s)	290, 390, 519
BseGI	GGATG	2 cut(s)	301, 561
BseLI	CCNNNNNNNGG	4 cut(s)	292, 627, 628, 651
BseMI	GCAATG	1 cut(s)	59
BseMII	CTCAG	2 cut(s)	453, 921
BseNI	ACTGG	1 cut(s)	385
BseRI	GAGGAG	1 cut(s)	664
BseXI	GCAGC	3 cut(s)	494, 536, 745
BsgI	GTGCAG	1 cut(s)	682
BshFI	GGCC	3 cut(s)	71, 644, 689
BshNI	GGYRCC	1 cut(s)	809
BshVI	ATCGAT	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	399
BsiSI	CCGG	2 cut(s)	400, 519
BslFI	GGGAC	1 cut(s)	798
BslI	CCNNNNNNNGG	4 cut(s)	292, 627, 628, 651
BsmAI	GTCTC	2 cut(s)	168, 629
BsmFI	GGGAC	1 cut(s)	798
BsnI	GGCC	3 cut(s)	71, 644, 689
Bso31I	GGTCTC	1 cut(s)	168
Bsp1286I	GDGCHC	1 cut(s)	399
Bsp13I	TCCGGA	1 cut(s)	399
Bsp143I	GATC	4 cut(s)	6, 10, 508, 666
BspACI	CCGC	3 cut(s)	4, 358, 742
BspANI	GGCC	3 cut(s)	71, 644, 689
BspCNI	CTCAG	2 cut(s)	452, 920
BspDI	ATCGAT	1 cut(s)	9
BspEI	TCCGGA	1 cut(s)	399
BspHI	TCATGA	1 cut(s)	145
BspLI	GGNNCC	2 cut(s)	811, 886
BspPI	GGATC	1 cut(s)	14
BspT107I	GGYRCC	1 cut(s)	809
BspTNI	GGTCTC	1 cut(s)	168
BsrDI	GCAATG	1 cut(s)	59
BsrI	ACTGG	1 cut(s)	385
BssECI	CCNNGG	3 cut(s)	290, 390, 519
BssMI	GATC	4 cut(s)	6, 10, 508, 666
Bst2UI	CCWGG	2 cut(s)	76, 501
Bst4CI	ACNGT	8 cut(s)	255, 313, 448, 472, 585, 706, 775, 932
Bst6I	CTCTTC	1 cut(s)	854
BstBAI	YACGTR	2 cut(s)	16, 826
BstC8I	GCNNGC	3 cut(s)	116, 358, 687
BstDEI	CTNAG	3 cut(s)	302, 439, 907
BstDSI	CCRYGG	2 cut(s)	290, 390
BstF5I	GGATG	2 cut(s)	301, 561
BstH2I	RGCGCY	1 cut(s)	264
BstHHI	GCGC	1 cut(s)	263
BstKTI	GATC	4 cut(s)	9, 13, 511, 669
BstMAI	GTCTC	2 cut(s)	168, 629
BstMBI	GATC	4 cut(s)	6, 10, 508, 666
BstMWI	GCNNNNNNNGC	5 cut(s)	269, 403, 473, 482, 596
BstNI	CCWGG	2 cut(s)	76, 501
BstNSI	RCATGY	1 cut(s)	68
BstSCI	CCNGG	3 cut(s)	74, 499, 518
BstSFI	CTRYAG	1 cut(s)	702
BstV1I	GCAGC	3 cut(s)	494, 536, 745
BstV2I	GAAGAC	1 cut(s)	839
Bsu15I	ATCGAT	1 cut(s)	9
BsuRI	GGCC	3 cut(s)	71, 644, 689
BsuTUI	ATCGAT	1 cut(s)	9
BtgI	CCRYGG	2 cut(s)	290, 390
BtsCI	GGATG	2 cut(s)	301, 561
BtsIMutI	CAGTG	2 cut(s)	453, 581
Cac8I	GCNNGC	3 cut(s)	116, 358, 687
CciI	TCATGA	1 cut(s)	145
CfoI	GCGC	1 cut(s)	263
ClaI	ATCGAT	1 cut(s)	9
CseI	GACGC	1 cut(s)	890
Csp6I	GTAC	2 cut(s)	611, 810
CviAII	CATG	4 cut(s)	31, 65, 146, 814
CviQI	GTAC	2 cut(s)	611, 810
DdeI	CTNAG	3 cut(s)	302, 439, 907
DpnI	GATC	4 cut(s)	8, 12, 510, 668
DpnII	GATC	4 cut(s)	6, 10, 508, 666
DraI	TTTAAA	1 cut(s)	553
EaeI	YGGCCR	1 cut(s)	69
Eam1104I	CTCTTC	1 cut(s)	854
EarI	CTCTTC	1 cut(s)	854
Ecl136II	GAGCTC	1 cut(s)	397
Eco24I	GRGCYC	1 cut(s)	399
Eco31I	GGTCTC	1 cut(s)	168
Eco53kI	GAGCTC	1 cut(s)	397
Eco57I	CTGAAG	1 cut(s)	240
Eco72I	CACGTG	1 cut(s)	16
EcoICRI	GAGCTC	1 cut(s)	397
EcoRII	CCWGG	2 cut(s)	74, 499
EcoT38I	GRGCYC	1 cut(s)	399
FaeI	CATG	4 cut(s)	34, 68, 149, 817
FalI	AAGNNNNNCTT	2 cut(s)	230, 262
FaqI	GGGAC	1 cut(s)	798
FatI	CATG	4 cut(s)	30, 64, 145, 813
FauI	CCCGC	1 cut(s)	365
FbaI	TGATCA	1 cut(s)	666
Fnu4HI	GCNGC	4 cut(s)	483, 525, 743, 759
FokI	GGATG	2 cut(s)	308, 548
FriOI	GRGCYC	1 cut(s)	399
Fsp4HI	GCNGC	4 cut(s)	483, 525, 743, 759
GlaI	GCGC	1 cut(s)	262
GluI	GCNGC	4 cut(s)	483, 525, 743, 759
HaeII	RGCGCY	1 cut(s)	264
HaeIII	GGCC	3 cut(s)	71, 644, 689
HapII	CCGG	2 cut(s)	400, 519
HgaI	GACGC	1 cut(s)	890
HhaI	GCGC	1 cut(s)	263
Hin1II	CATG	4 cut(s)	34, 68, 149, 817
Hin6I	GCGC	1 cut(s)	261
HinP1I	GCGC	1 cut(s)	261
HinfI	GANTC	5 cut(s)	420, 515, 844, 911, 917
HpaII	CCGG	2 cut(s)	400, 519
HphI	GGTGA	3 cut(s)	518, 610, 841
Hpy166II	GTNNAC	1 cut(s)	928
Hpy188I	TCNGA	5 cut(s)	220, 269, 910, 916, 922
Hpy188III	TCNNGA	4 cut(s)	38, 146, 400, 512
Hpy8I	GTNNAC	1 cut(s)	928
HpyAV	CCTTC	3 cut(s)	13, 197, 410
HpyCH4III	ACNGT	8 cut(s)	255, 313, 448, 472, 585, 706, 775, 932
HpyCH4IV	ACGT	2 cut(s)	15, 825
HpyCH4V	TGCA	6 cut(s)	64, 118, 467, 482, 699, 761
HpyF10VI	GCNNNNNNNGC	5 cut(s)	269, 403, 473, 482, 596
HpyF3I	CTNAG	3 cut(s)	302, 439, 907
HpySE526I	ACGT	2 cut(s)	15, 825
Hsp92II	CATG	4 cut(s)	34, 68, 149, 817
HspAI	GCGC	1 cut(s)	261
Kpn2I	TCCGGA	1 cut(s)	399
KpnI	GGTACC	1 cut(s)	813
Ksp22I	TGATCA	1 cut(s)	666
Kzo9I	GATC	4 cut(s)	6, 10, 508, 666
LmnI	GCTCC	2 cut(s)	394, 402
Lsp1109I	GCAGC	3 cut(s)	494, 536, 745
LweI	GCATC	1 cut(s)	599
MaeII	ACGT	2 cut(s)	15, 825
MaeIII	GTNAC	5 cut(s)	313, 376, 442, 769, 902
MalI	GATC	4 cut(s)	8, 12, 510, 668
MboI	GATC	4 cut(s)	6, 10, 508, 666
MboII	GAAGA	5 cut(s)	233, 711, 844, 871, 880
MhlI	GDGCHC	1 cut(s)	399
MlsI	TGGCCA	1 cut(s)	71
MluCI	AATT	6 cut(s)	52, 95, 100, 234, 384, 555
MluNI	TGGCCA	1 cut(s)	71
MlyI	GAGTC	2 cut(s)	509, 920
MnlI	CCTC	6 cut(s)	632, 642, 645, 700, 849, 870
Mox20I	TGGCCA	1 cut(s)	71
MroI	TCCGGA	1 cut(s)	399
MroXI	GAANNNNTTC	1 cut(s)	207
MscI	TGGCCA	1 cut(s)	71
MseI	TTAA	5 cut(s)	99, 237, 282, 324, 552
MslI	CAYNNNNRTG	1 cut(s)	155
Msp20I	TGGCCA	1 cut(s)	71
MspA1I	CMGCKG	1 cut(s)	527
MspI	CCGG	2 cut(s)	400, 519
MspR9I	CCNGG	3 cut(s)	76, 501, 520
MvaI	CCWGG	2 cut(s)	76, 501
MwoI	GCNNNNNNNGC	5 cut(s)	269, 403, 473, 482, 596
NciI	CCSGG	1 cut(s)	520
NdeII	GATC	4 cut(s)	6, 10, 508, 666
NlaIII	CATG	4 cut(s)	34, 68, 149, 817
NlaIV	GGNNCC	2 cut(s)	811, 886
NmeAIII	GCCGAG	1 cut(s)	670
NmuCI	GTSAC	4 cut(s)	313, 442, 769, 902
NspI	RCATGY	1 cut(s)	68
OliI	CACNNNNGTG	1 cut(s)	155
PagI	TCATGA	1 cut(s)	145
PdmI	GAANNNNTTC	1 cut(s)	207
PfeI	GAWTC	3 cut(s)	420, 844, 917
PkrI	GCNGC	4 cut(s)	484, 526, 744, 760
PleI	GAGTC	2 cut(s)	509, 919
PmaCI	CACGTG	1 cut(s)	16
PmlI	CACGTG	1 cut(s)	16
PpsI	GAGTC	2 cut(s)	509, 919
Ppu21I	YACGTR	2 cut(s)	16, 826
PsiI	TTATAA	1 cut(s)	791
Psp124BI	GAGCTC	1 cut(s)	399
Psp6I	CCWGG	2 cut(s)	74, 499
PspCI	CACGTG	1 cut(s)	16
PspGI	CCWGG	2 cut(s)	74, 499
PspN4I	GGNNCC	2 cut(s)	811, 886
PvuII	CAGCTG	1 cut(s)	527
RsaI	GTAC	2 cut(s)	612, 811
RsaNI	GTAC	2 cut(s)	611, 810
RseI	CAYNNNNRTG	1 cut(s)	155
SacI	GAGCTC	1 cut(s)	399
SaqAI	TTAA	5 cut(s)	99, 237, 282, 324, 552
SatI	GCNGC	4 cut(s)	483, 525, 743, 759
Sau3AI	GATC	4 cut(s)	6, 10, 508, 666
SchI	GAGTC	2 cut(s)	509, 920
ScrFI	CCNGG	3 cut(s)	76, 501, 520
SduI	GDGCHC	1 cut(s)	399
SfaNI	GCATC	1 cut(s)	599
SfcI	CTRYAG	1 cut(s)	702
SmiMI	CAYNNNNRTG	1 cut(s)	155
Sse9I	AATT	6 cut(s)	52, 95, 100, 234, 384, 555
SsiI	CCGC	3 cut(s)	4, 358, 742
SstI	GAGCTC	1 cut(s)	399
StyD4I	CCNGG	3 cut(s)	74, 499, 518
TaaI	ACNGT	8 cut(s)	255, 313, 448, 472, 585, 706, 775, 932
TaiI	ACGT	2 cut(s)	18, 828
TaqI	TCGA	2 cut(s)	9, 875
TasI	AATT	6 cut(s)	52, 95, 100, 234, 384, 555
TauI	GCSGC	1 cut(s)	745
TfiI	GAWTC	3 cut(s)	420, 844, 917
Tru1I	TTAA	5 cut(s)	99, 237, 282, 324, 552
Tru9I	TTAA	5 cut(s)	99, 237, 282, 324, 552
TscAI	CASTG	2 cut(s)	453, 588
TseFI	GTSAC	4 cut(s)	313, 442, 769, 902
TseI	GCWGC	3 cut(s)	482, 524, 758
Tsp45I	GTSAC	4 cut(s)	313, 442, 769, 902
TspDTI	ATGAA	5 cut(s)	134, 291, 550, 711, 836
TspGWI	ACGGA	1 cut(s)	407
TspRI	CASTG	2 cut(s)	453, 588
XapI	RAATTY	2 cut(s)	95, 555
XceI	RCATGY	1 cut(s)	68
XcmI	CCANNNNNNNNNTGG	1 cut(s)	377
XmnI	GAANNNNTTC	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.