Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0005414

Physical Location & Seq

Genomic Coordinates Forward (+)

20101332 .. 20102570

Gene Structure 1239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g17890.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGTGCCTACGTAGAGATAATTTGGTAAAGGTAAGGATAAGAGAGATCCCGGTGCTAGATAAGTTAAAATATCTCCATTGTCTGCTGTCTTCAGTGCTTCCTATAGTTAAACAAATCCATCAAGTACAGTGCTTTGAAGTTGAACTGGAAAAAAAGCTTCATGGAACAGATATAGATCTTGCCCGGACAAAATTGAATGCAGATGACCAAATGTGCTGCAATTTCTGTAGGATTCCCATCATTGATTATCATTGGCACTGTTCCCGCTGCGCGTATGATCTATGCCTGAACTGTTGTCGAGATCTTCGAGAAGAATCCATGCCTGGTGTTAAAGGAGAGGTGGTAGAGAATCAGATTGGTGAGGATAGTCGGGAAGAAGAAACCAAGTTGGAGCAGCCAAAATTGTCCAAAGTCAGACTAAATTTAGCAGACAAATTTTCCAATTGGAAAGCCAACAGTGATGGAAGTATCCCTTGCCCTCCAAAGGAGTATGGTGGCTGTGGCCATTCATCATTGAACTTAAGCCGTATCTTTAAGATGAACTGGGTTGCAAAACTAGTAAAAAAATGCAGAGGAAATGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0033169 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03010 ko04714 map03010 map04714

Pfam Domains

Protein Families

JmjC WRC zf-4CXXC_R1

Protein Analysis

195

Amino Acids

22.3

Weight (kDa)

8.5

Isoelectric Point (pI)

30.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09060 AT1G09060 AT1G09060 AT1G09060
fragaria_vesca	FvH4_6g06290 FvH4_6g06290 FvH4_6g06290 FvH4_6g06290
malus_domestica	MD04G1202800.v1.1 MD12G1216600.v1.1
prunus_persica	Prupe.6G322900_v2.0.a1 Prupe.6G322900_v2.0.a1 Prupe.6G322900_v2.0.a1 Prupe.6G322900_v2.0.a1 Prupe.6G322900_v2.0.a1
pyrus_communis	pycom04g17890 pycom12g20210
rosa_chinensis	RchiOBHm_Chr3g0455331
rosa_laevigata	RLG00000025369
rosa_multiflora	Rmu_sc0002169.1_g000043
rosa_roxburghii	Rroxscaffold_6G00424370
rosa_rugosa	Rorug03G0006300 Rorug03G0006400 Rorug03G0006500
rosa_samantha	Rh3AG066100 Rh3BG068300 Rh3CG066700 Rh3DG068200
rosa_wichuraiana	Rw3G005210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	272
AciI	CCGC	1 cut(s)	265
AclWI	GGATC	1 cut(s)	40
AcoI	YGGCCR	1 cut(s)	502
AcsI	RAATTY	2 cut(s)	421, 434
AcuI	CTGAAG	1 cut(s)	75
AfaI	GTAC	1 cut(s)	126
AfiI	CCNNNNNNNGG	1 cut(s)	484
AflII	CTTAAG	1 cut(s)	520
AgsI	TTSAA	4 cut(s)	137, 143, 196, 517
AhlI	ACTAGT	1 cut(s)	556
AjnI	CCWGG	1 cut(s)	322
AluBI	AGCT	1 cut(s)	157
AluI	AGCT	1 cut(s)	157
AlwI	GGATC	1 cut(s)	40
AoxI	GGCC	1 cut(s)	502
ApeKI	GCWGC	3 cut(s)	216, 267, 394
ApoI	RAATTY	2 cut(s)	421, 434
AspLEI	GCGC	1 cut(s)	272
AsuC2I	CCSGG	2 cut(s)	50, 184
AsuHPI	GGTGA	1 cut(s)	371
BalI	TGGCCA	1 cut(s)	504
BbsI	GAAGAC	1 cut(s)	81
BbvI	GCAGC	3 cut(s)	203, 254, 406
BccI	CCATC	3 cut(s)	126, 245, 455
BceAI	ACGGC	1 cut(s)	510
BciT130I	CCWGG	1 cut(s)	324
BciVI	GTATCC	1 cut(s)	479
BcnI	CCSGG	2 cut(s)	50, 184
BcuI	ACTAGT	1 cut(s)	556
BfaI	CTAG	2 cut(s)	56, 557
BfmI	CTRYAG	2 cut(s)	102, 226
BfrI	CTTAAG	1 cut(s)	520
BfuI	GTATCC	1 cut(s)	479
BglII	AGATCT	2 cut(s)	175, 301
BisI	GCNGC	3 cut(s)	217, 268, 395
BlsI	GCNGC	3 cut(s)	218, 269, 396
Bme1390I	CCNGG	3 cut(s)	50, 184, 324
BmrFI	CCNGG	3 cut(s)	50, 184, 324
BmrI	ACTGGG	1 cut(s)	553
BmuI	ACTGGG	1 cut(s)	553
BpiI	GAAGAC	1 cut(s)	81
BpuMI	CCSGG	2 cut(s)	50, 184
BsaAI	YACGTR	1 cut(s)	11
BsaBI	GATNNNNATC	2 cut(s)	174, 236
BsaXI	ACNNNNNCTCC	2 cut(s)	327, 357
Bsc4I	CCNNNNNNNGG	1 cut(s)	484
Bse1I	ACTGG	2 cut(s)	150, 548
Bse8I	GATNNNNATC	2 cut(s)	174, 236
BseBI	CCWGG	1 cut(s)	324
BseJI	GATNNNNATC	2 cut(s)	174, 236
BseLI	CCNNNNNNNGG	1 cut(s)	484
BseNI	ACTGG	2 cut(s)	150, 548
BseXI	GCAGC	3 cut(s)	203, 254, 406
Bsh1236I	CGCG	1 cut(s)	272
BshFI	GGCC	1 cut(s)	504
BsiSI	CCGG	2 cut(s)	50, 184
BslI	CCNNNNNNNGG	1 cut(s)	484
BsmI	GAATGC	1 cut(s)	202
BsnI	GGCC	1 cut(s)	504
Bsp143I	GATC	4 cut(s)	45, 175, 277, 301
BspACI	CCGC	1 cut(s)	265
BspANI	GGCC	1 cut(s)	504
BspFNI	CGCG	1 cut(s)	272
BspPI	GGATC	1 cut(s)	40
BspTI	CTTAAG	1 cut(s)	520
BsrI	ACTGG	2 cut(s)	150, 548
BssMI	GATC	4 cut(s)	45, 175, 277, 301
Bst2UI	CCWGG	1 cut(s)	324
Bst4CI	ACNGT	4 cut(s)	129, 260, 293, 458
BstAFI	CTTAAG	1 cut(s)	520
BstBAI	YACGTR	1 cut(s)	11
BstFNI	CGCG	1 cut(s)	272
BstHHI	GCGC	1 cut(s)	272
BstKTI	GATC	4 cut(s)	48, 178, 280, 304
BstMBI	GATC	4 cut(s)	45, 175, 277, 301
BstNI	CCWGG	1 cut(s)	324
BstSCI	CCNGG	3 cut(s)	48, 182, 322
BstSFI	CTRYAG	2 cut(s)	102, 226
BstSNI	TACGTA	1 cut(s)	11
BstUI	CGCG	1 cut(s)	272
BstV1I	GCAGC	3 cut(s)	203, 254, 406
BstV2I	GAAGAC	1 cut(s)	81
BstX2I	RGATCY	3 cut(s)	45, 175, 301
BstYI	RGATCY	3 cut(s)	45, 175, 301
BsuI	GTATCC	1 cut(s)	479
BsuRI	GGCC	1 cut(s)	504
BtsIMutI	CAGTG	4 cut(s)	99, 134, 256, 463
CfoI	GCGC	1 cut(s)	272
Csp6I	GTAC	1 cut(s)	125
CviAII	CATG	2 cut(s)	161, 319
CviJI	RGCY	6 cut(s)	157, 397, 452, 498, 504, 525
CviKI_1	RGCY	6 cut(s)	157, 397, 452, 498, 504, 525
CviQI	GTAC	1 cut(s)	125
DpnI	GATC	4 cut(s)	47, 177, 279, 303
DpnII	GATC	4 cut(s)	45, 175, 277, 301
EaeI	YGGCCR	1 cut(s)	502
Eco105I	TACGTA	1 cut(s)	11
Eco57I	CTGAAG	1 cut(s)	75
EcoRII	CCWGG	1 cut(s)	322
FaeI	CATG	2 cut(s)	164, 322
FaiI	YATR	7 cut(s)	104, 162, 173, 276, 283, 320, 492
FalI	AAGNNNNNCTT	2 cut(s)	457, 489
FatI	CATG	2 cut(s)	160, 318
FauI	CCCGC	1 cut(s)	272
Fnu4HI	GCNGC	3 cut(s)	217, 268, 395
Fsp4HI	GCNGC	3 cut(s)	217, 268, 395
FspBI	CTAG	2 cut(s)	56, 557
GlaI	GCGC	1 cut(s)	271
GluI	GCNGC	3 cut(s)	217, 268, 395
HaeIII	GGCC	1 cut(s)	504
HapII	CCGG	2 cut(s)	50, 184
HhaI	GCGC	1 cut(s)	272
Hin1II	CATG	2 cut(s)	164, 322
Hin6I	GCGC	1 cut(s)	270
HinP1I	GCGC	1 cut(s)	270
HindIII	AAGCTT	1 cut(s)	155
HinfI	GANTC	3 cut(s)	232, 314, 349
HpaII	CCGG	2 cut(s)	50, 184
HphI	GGTGA	1 cut(s)	371
Hpy188I	TCNGA	2 cut(s)	354, 416
Hpy188III	TCNNGA	3 cut(s)	299, 308, 371
HpyCH4III	ACNGT	4 cut(s)	129, 260, 293, 458
HpyCH4IV	ACGT	1 cut(s)	10
HpyCH4V	TGCA	4 cut(s)	200, 219, 551, 570
HpySE526I	ACGT	1 cut(s)	10
Hsp92II	CATG	2 cut(s)	164, 322
HspAI	GCGC	1 cut(s)	270
Kzo9I	GATC	4 cut(s)	45, 175, 277, 301
LmnI	GCTCC	1 cut(s)	391
LpnPI	CCDG	7 cut(s)	63, 131, 197, 299, 309, 336, 529
Lsp1109I	GCAGC	3 cut(s)	203, 254, 406
MaeI	CTAG	2 cut(s)	56, 557
MaeII	ACGT	1 cut(s)	10
MalI	GATC	4 cut(s)	47, 177, 279, 303
MboI	GATC	4 cut(s)	45, 175, 277, 301
MboII	GAAGA	5 cut(s)	81, 296, 323, 386, 389
MfeI	CAATTG	1 cut(s)	442
MflI	RGATCY	3 cut(s)	45, 175, 301
MlsI	TGGCCA	1 cut(s)	504
MluCI	AATT	7 cut(s)	19, 191, 220, 401, 421, 434, 442
MluNI	TGGCCA	1 cut(s)	504
MmeI	TCCRAC	1 cut(s)	369
MnlI	CCTC	4 cut(s)	331, 355, 489, 566
Mox20I	TGGCCA	1 cut(s)	504
MscI	TGGCCA	1 cut(s)	504
MseI	TTAA	5 cut(s)	65, 108, 330, 521, 534
Msp20I	TGGCCA	1 cut(s)	504
MspA1I	CMGCKG	1 cut(s)	267
MspCI	CTTAAG	1 cut(s)	520
MspI	CCGG	2 cut(s)	50, 184
MspR9I	CCNGG	3 cut(s)	50, 184, 324
MunI	CAATTG	1 cut(s)	442
Mva1269I	GAATGC	1 cut(s)	202
MvaI	CCWGG	1 cut(s)	324
MvnI	CGCG	1 cut(s)	272
NciI	CCSGG	2 cut(s)	50, 184
NdeII	GATC	4 cut(s)	45, 175, 277, 301
NlaIII	CATG	2 cut(s)	164, 322
PcsI	WCGNNNNNNNCGW	1 cut(s)	304
PctI	GAATGC	1 cut(s)	202
PfeI	GAWTC	3 cut(s)	232, 314, 349
PkrI	GCNGC	3 cut(s)	218, 269, 396
Ppu21I	YACGTR	1 cut(s)	11
Psp6I	CCWGG	1 cut(s)	322
PspGI	CCWGG	1 cut(s)	322
PsuI	RGATCY	3 cut(s)	45, 175, 301
RsaI	GTAC	1 cut(s)	126
RsaNI	GTAC	1 cut(s)	125
SaqAI	TTAA	5 cut(s)	65, 108, 330, 521, 534
SatI	GCNGC	3 cut(s)	217, 268, 395
Sau3AI	GATC	4 cut(s)	45, 175, 277, 301
ScrFI	CCNGG	3 cut(s)	50, 184, 324
SetI	ASST	4 cut(s)	13, 33, 159, 342
SfcI	CTRYAG	2 cut(s)	102, 226
SmlI	CTYRAG	1 cut(s)	520
SmoI	CTYRAG	1 cut(s)	520
SnaBI	TACGTA	1 cut(s)	11
SpeI	ACTAGT	1 cut(s)	556
Sse9I	AATT	7 cut(s)	19, 191, 220, 401, 421, 434, 442
SsiI	CCGC	1 cut(s)	265
SspMI	CTAG	2 cut(s)	56, 557
StyD4I	CCNGG	3 cut(s)	48, 182, 322
TaaI	ACNGT	4 cut(s)	129, 260, 293, 458
TaiI	ACGT	1 cut(s)	13
TaqI	TCGA	2 cut(s)	298, 307
TasI	AATT	7 cut(s)	19, 191, 220, 401, 421, 434, 442
TatI	WGTACW	1 cut(s)	124
TfiI	GAWTC	3 cut(s)	232, 314, 349
Tru1I	TTAA	5 cut(s)	65, 108, 330, 521, 534
Tru9I	TTAA	5 cut(s)	65, 108, 330, 521, 534
TscAI	CASTG	4 cut(s)	99, 134, 263, 463
TseI	GCWGC	3 cut(s)	216, 267, 394
TspDTI	ATGAA	3 cut(s)	149, 498, 554
TspRI	CASTG	4 cut(s)	99, 134, 263, 463
Vha464I	CTTAAG	1 cut(s)	520
XapI	RAATTY	2 cut(s)	421, 434
XspI	CTAG	2 cut(s)	56, 557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.