Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005414

Physical Location & Seq

Genomic Coordinates Reverse (-)

460007 .. 461114

Gene Structure 1108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0006400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGAGAGAAAGAATGGAAAGACTTGTGCTTCTTCCTTTCACCATTGGTTGTGTTTCTGAATCAAGCATTGCTGTTGGTGCACAACAACAGCCCAGAAGATCAAAATCAGATACAAATCCATCTCCAATAAGAACCAAAGAAGAAGAAGAGGAAGAGGAGGAAGGAGATAGCTTATCAAGTGGCGAGAACATGAAGAACTCATTTAGATCCCTCGCTCTTTCAAAACCAAACATATCTGTTGGTATACATAGGCTCTCCAAGGGTTTCAAGAATTTTTCTCAATTGTTTGTGTACAAGGATGAAATGGAAGAAGAAGAAGAACTGGAAATGGATATGGAAATAGGGTGTCCTACAGATGTGAAGCATGTGACACACATAGGTTTGGATGGTTCTGCTTCTGCTGCAACAACTGACCCAATTCATAAGGACTGTTGGGATGATCTCATATCTCCTGTTTCTTGGAGGCCTTCACAACCTGATGCTGATGCTGTCAATGTCAATTTCAATGGCTCCTCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0033169 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03010 ko04714 map03010 map04714

Pfam Domains

Protein Families

JmjC WRC zf-4CXXC_R1

Protein Analysis

173

Amino Acids

19.23

Weight (kDa)

4.65

Isoelectric Point (pI)

64.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09060 AT1G09060 AT1G09060 AT1G09060
fragaria_vesca	FvH4_6g06290 FvH4_6g06290 FvH4_6g06290 FvH4_6g06290
malus_domestica	MD04G1202800.v1.1 MD12G1216600.v1.1
prunus_persica	Prupe.6G322900_v2.0.a1 Prupe.6G322900_v2.0.a1 Prupe.6G322900_v2.0.a1 Prupe.6G322900_v2.0.a1 Prupe.6G322900_v2.0.a1
pyrus_communis	pycom04g17890 pycom12g20210
rosa_chinensis	RchiOBHm_Chr3g0455331
rosa_laevigata	RLG00000025369
rosa_multiflora	Rmu_sc0002169.1_g000043
rosa_roxburghii	Rroxscaffold_6G00424370
rosa_rugosa	Rorug03G0006300 Rorug03G0006400 Rorug03G0006500
rosa_samantha	Rh3AG066100 Rh3BG068300 Rh3CG066700 Rh3DG068200
rosa_wichuraiana	Rw3G005210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	244
AclWI	GGATC	1 cut(s)	201
AcsI	RAATTY	1 cut(s)	271
AfaI	GTAC	1 cut(s)	293
AgsI	TTSAA	3 cut(s)	222, 268, 505
AluBI	AGCT	1 cut(s)	171
AluI	AGCT	1 cut(s)	171
Alw21I	GWGCWC	1 cut(s)	82
Alw44I	GTGCAC	1 cut(s)	78
AlwI	GGATC	1 cut(s)	201
AoxI	GGCC	1 cut(s)	464
ApaLI	GTGCAC	1 cut(s)	78
ApeKI	GCWGC	1 cut(s)	401
ApoI	RAATTY	1 cut(s)	271
AsuHPI	GGTGA	1 cut(s)	31
BaeGI	GKGCMC	1 cut(s)	82
Bbv12I	GWGCWC	1 cut(s)	82
BbvI	GCAGC	1 cut(s)	388
BccI	CCATC	2 cut(s)	127, 380
BfmI	CTRYAG	1 cut(s)	351
BisI	GCNGC	1 cut(s)	402
BlsI	GCNGC	1 cut(s)	403
BmiI	GGNNCC	1 cut(s)	511
BmsI	GCATC	2 cut(s)	469, 475
BsaBI	GATNNNNATC	2 cut(s)	103, 114
BsaJI	CCNNGG	1 cut(s)	258
Bse1I	ACTGG	1 cut(s)	327
Bse3DI	GCAATG	1 cut(s)	66
Bse8I	GATNNNNATC	2 cut(s)	103, 114
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	3 cut(s)	304, 391, 442
BseJI	GATNNNNATC	2 cut(s)	103, 114
BseMI	GCAATG	1 cut(s)	66
BseNI	ACTGG	1 cut(s)	327
BseRI	GAGGAG	2 cut(s)	170, 502
BseSI	GKGCMC	1 cut(s)	82
BseXI	GCAGC	1 cut(s)	388
BshFI	GGCC	1 cut(s)	466
BsiHKAI	GWGCWC	1 cut(s)	82
BsnI	GGCC	1 cut(s)	466
Bsp1286I	GDGCHC	1 cut(s)	82
Bsp1407I	TGTACA	1 cut(s)	291
Bsp143I	GATC	3 cut(s)	98, 206, 439
BspANI	GGCC	1 cut(s)	466
BspHI	TCATGA	1 cut(s)	518
BspLI	GGNNCC	1 cut(s)	511
BspPI	GGATC	1 cut(s)	201
BsrDI	GCAATG	1 cut(s)	66
BsrGI	TGTACA	1 cut(s)	291
BsrI	ACTGG	1 cut(s)	327
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	3 cut(s)	98, 206, 439
BssNAI	GTATAC	1 cut(s)	245
BssT1I	CCWWGG	1 cut(s)	258
Bst1107I	GTATAC	1 cut(s)	245
Bst4CI	ACNGT	1 cut(s)	431
Bst6I	CTCTTC	2 cut(s)	141, 147
BstAUI	TGTACA	1 cut(s)	291
BstF5I	GGATG	3 cut(s)	304, 391, 442
BstKTI	GATC	3 cut(s)	101, 209, 442
BstMBI	GATC	3 cut(s)	98, 206, 439
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 401
BstNSI	RCATGY	1 cut(s)	368
BstSFI	CTRYAG	1 cut(s)	351
BstSLI	GKGCMC	1 cut(s)	82
BstV1I	GCAGC	1 cut(s)	388
BstX2I	RGATCY	1 cut(s)	206
BstYI	RGATCY	1 cut(s)	206
BstZ17I	GTATAC	1 cut(s)	245
BsuRI	GGCC	1 cut(s)	466
BtsCI	GGATG	3 cut(s)	304, 391, 442
CciI	TCATGA	1 cut(s)	518
Csp6I	GTAC	1 cut(s)	292
CviAII	CATG	3 cut(s)	190, 365, 519
CviJI	RGCY	5 cut(s)	91, 171, 253, 466, 510
CviKI_1	RGCY	5 cut(s)	91, 171, 253, 466, 510
CviQI	GTAC	1 cut(s)	292
DpnI	GATC	3 cut(s)	100, 208, 441
DpnII	GATC	3 cut(s)	98, 206, 439
Eam1104I	CTCTTC	2 cut(s)	141, 147
EarI	CTCTTC	2 cut(s)	141, 147
Eco130I	CCWWGG	1 cut(s)	258
Eco147I	AGGCCT	1 cut(s)	466
EcoT14I	CCWWGG	1 cut(s)	258
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	3 cut(s)	193, 368, 522
FatI	CATG	3 cut(s)	189, 364, 518
FblI	GTMKAC	1 cut(s)	244
Fnu4HI	GCNGC	1 cut(s)	402
FokI	GGATG	3 cut(s)	311, 398, 449
Fsp4HI	GCNGC	1 cut(s)	402
GluI	GCNGC	1 cut(s)	402
HaeIII	GGCC	1 cut(s)	466
Hin1II	CATG	3 cut(s)	193, 368, 522
HinfI	GANTC	1 cut(s)	59
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	3 cut(s)	80, 245, 292
Hpy188I	TCNGA	2 cut(s)	58, 109
Hpy188III	TCNNGA	2 cut(s)	268, 519
Hpy8I	GTNNAC	3 cut(s)	80, 245, 292
HpyAV	CCTTC	2 cut(s)	155, 477
HpyCH4III	ACNGT	1 cut(s)	431
HpyCH4V	TGCA	2 cut(s)	80, 404
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 401
Hsp92II	CATG	3 cut(s)	193, 368, 522
Kzo9I	GATC	3 cut(s)	98, 206, 439
LmnI	GCTCC	1 cut(s)	515
LpnPI	CCDG	4 cut(s)	106, 308, 465, 489
Lsp1109I	GCAGC	1 cut(s)	388
LweI	GCATC	2 cut(s)	469, 475
MaeIII	GTNAC	1 cut(s)	367
MalI	GATC	3 cut(s)	100, 208, 441
MboI	GATC	3 cut(s)	98, 206, 439
MfeI	CAATTG	1 cut(s)	281
MflI	RGATCY	1 cut(s)	206
MhlI	GDGCHC	1 cut(s)	82
MluCI	AATT	4 cut(s)	271, 281, 417, 499
MnlI	CCTC	5 cut(s)	142, 148, 151, 221, 456
MunI	CAATTG	1 cut(s)	281
MwoI	GCNNNNNNNGC	2 cut(s)	77, 401
NdeII	GATC	3 cut(s)	98, 206, 439
NlaIII	CATG	3 cut(s)	193, 368, 522
NlaIV	GGNNCC	1 cut(s)	511
NmuCI	GTSAC	1 cut(s)	367
NspI	RCATGY	1 cut(s)	368
PagI	TCATGA	1 cut(s)	518
PceI	AGGCCT	1 cut(s)	466
PfeI	GAWTC	1 cut(s)	59
PkrI	GCNGC	1 cut(s)	403
PspN4I	GGNNCC	1 cut(s)	511
PsuI	RGATCY	1 cut(s)	206
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
SatI	GCNGC	1 cut(s)	402
Sau3AI	GATC	3 cut(s)	98, 206, 439
SduI	GDGCHC	1 cut(s)	82
SetI	ASST	3 cut(s)	173, 382, 478
SfaNI	GCATC	2 cut(s)	469, 475
SfcI	CTRYAG	1 cut(s)	351
Sse9I	AATT	4 cut(s)	271, 281, 417, 499
SseBI	AGGCCT	1 cut(s)	466
StuI	AGGCCT	1 cut(s)	466
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	1 cut(s)	431
TasI	AATT	4 cut(s)	271, 281, 417, 499
TatI	WGTACW	1 cut(s)	291
TfiI	GAWTC	1 cut(s)	59
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	1 cut(s)	401
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	4 cut(s)	206, 315, 410, 507
VneI	GTGCAC	1 cut(s)	78
XapI	RAATTY	1 cut(s)	271
XceI	RCATGY	1 cut(s)	368
XmiI	GTMKAC	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.